Wall clock time and date at job start Sun Mar 29 2020 22:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99780 * 2 1 4 4 N 1.46897 * 109.47441 * 124.99717 * 3 2 1 5 5 C 1.46902 * 110.99827 * 66.04074 * 4 3 2 6 6 C 1.38586 * 111.00180 * 189.99905 * 4 3 2 7 7 N 1.31211 * 126.47044 * 299.47606 * 6 4 3 8 8 N 1.28526 * 109.86222 * 179.97438 * 7 6 4 9 9 C 1.30299 * 110.05101 * 0.02562 * 8 7 6 10 10 C 1.50697 * 126.34860 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46712 * 90.02483 * 10 9 8 12 12 C 1.50705 * 109.46904 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00031 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00135 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99927 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99813 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47307 * 89.99602 * 16 14 12 18 18 H 1.48500 * 109.46908 * 209.99684 * 16 14 12 19 19 H 1.48500 * 109.47053 * 329.99726 * 16 14 12 20 20 N 1.36450 * 126.47474 * 119.78876 * 6 4 3 21 21 C 1.46500 * 127.13547 * 0.02562 * 20 6 4 22 22 H 1.08002 * 119.99444 * 180.02562 * 1 2 3 23 23 H 1.08000 * 120.00448 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.99955 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47075 * 4.99671 * 3 2 1 26 26 H 1.09000 * 109.47024 * 245.00056 * 3 2 1 27 27 H 1.09004 * 109.46846 * 178.44093 * 5 4 3 28 28 H 1.08992 * 109.47697 * 298.44363 * 5 4 3 29 29 H 1.09005 * 109.46845 * 58.44826 * 5 4 3 30 30 H 1.08996 * 109.47220 * 330.02568 * 10 9 8 31 31 H 1.09001 * 109.47372 * 210.02195 * 10 9 8 32 32 H 1.08996 * 109.47209 * 60.00078 * 11 10 9 33 33 H 1.09002 * 109.47381 * 299.99617 * 11 10 9 34 34 H 0.97002 * 119.99917 * 179.97438 * 15 14 12 35 35 H 1.09007 * 109.47356 * 265.03632 * 21 20 6 36 36 H 1.09002 * 109.47693 * 25.03891 * 21 20 6 37 37 H 1.08999 * 109.47037 * 145.03986 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9963 1.3322 1.1345 5 6 4.0494 0.3206 0.9744 6 6 3.5419 2.5954 1.2990 7 7 4.2648 3.2528 0.4233 8 7 4.6044 4.3944 0.9064 9 6 4.1228 4.5317 2.1092 10 6 4.2982 5.7265 3.0107 11 6 3.1592 6.7191 2.7692 12 6 3.3349 7.9143 3.6702 13 1 4.1752 7.9614 4.3470 14 6 2.4236 8.9481 3.6297 15 7 2.5767 9.9909 4.4164 16 14 0.9706 8.8670 2.4586 17 1 -0.1765 8.2124 3.1375 18 1 0.5856 10.2422 2.0515 19 1 1.3475 8.0819 1.2558 20 7 3.4337 3.3881 2.4044 21 6 2.7238 3.0793 3.6481 22 1 -0.5399 -0.9354 0.0004 23 1 -0.5401 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3585 2.1316 0.0895 26 1 2.6213 1.4027 -0.9314 27 1 4.7417 0.3808 1.8141 28 1 3.5989 -0.6715 0.9453 29 1 4.5890 0.5020 0.0448 30 1 5.2518 6.2080 2.7942 31 1 4.2829 5.4021 4.0512 32 1 2.2056 6.2376 2.9856 33 1 3.1744 7.0436 1.7287 34 1 1.9358 10.7184 4.3876 35 1 1.7188 3.4994 3.6068 36 1 2.6609 1.9981 3.7718 37 1 3.2635 3.5106 4.4912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355660951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:47 Heat of formation + Delta-G solvation = 104.799087 kcal Electronic energy + Delta-G solvation = -18154.497721 eV Core-core repulsion = 15355.198982 eV Total energy + Delta-G solvation = -2799.298740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.70769 -38.02971 -34.92822 -34.16483 -33.48129 -31.81910 -29.03069 -27.51792 -27.30424 -25.66667 -24.72547 -21.62338 -20.74244 -20.12026 -19.77887 -17.20946 -16.82013 -16.46222 -16.04412 -15.45902 -14.86794 -14.31718 -13.97663 -13.52904 -13.51625 -13.23876 -13.17336 -12.75507 -12.52963 -12.37795 -11.85536 -11.60857 -11.34297 -11.27035 -11.11201 -10.60640 -10.32024 -10.13250 -9.90995 -9.82660 -9.78903 -9.31443 -8.85975 -8.61438 -8.58448 -6.11417 -4.10940 1.82032 2.03336 2.51038 3.12323 3.25960 3.35214 3.41009 3.77290 4.39934 4.54957 4.77095 4.83585 4.89907 4.98893 5.16198 5.22224 5.24219 5.25411 5.41905 5.45509 5.54441 5.56665 5.63666 5.75454 6.15958 6.20341 6.27736 6.30240 6.43436 6.47565 6.50557 6.80387 7.10006 7.25866 7.34972 7.67526 8.42655 8.91679 9.02077 9.50347 11.01488 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.005218 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.338861 B = 5365.112944 C = 5871.936144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.092 3.908 4 N -0.461 5.461 5 C 0.034 3.966 6 C 0.317 3.683 7 N -0.312 5.312 8 N -0.296 5.296 9 C 0.211 3.789 10 C -0.022 4.022 11 C -0.004 4.004 12 C -0.523 4.523 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.875 3.125 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.265 1.265 20 N -0.466 5.466 21 C 0.081 3.919 22 H 0.101 0.899 23 H 0.097 0.903 24 H 0.112 0.888 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.009 0.991 33 H 0.025 0.975 34 H 0.264 0.736 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 -21.192 -4.342 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.167 4.167 3 C -0.034 4.034 4 N -0.186 5.186 5 C -0.113 4.113 6 C -0.039 4.039 7 N -0.156 5.156 8 N -0.136 5.136 9 C -0.056 4.056 10 C -0.062 4.062 11 C -0.042 4.042 12 C -0.561 4.561 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.190 1.190 20 N -0.159 5.159 21 C -0.062 4.062 22 H 0.119 0.881 23 H 0.116 0.884 24 H 0.130 0.870 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.137 -20.828 -5.118 21.554 hybrid contribution -1.235 -0.133 0.034 1.243 sum -3.372 -20.961 -5.084 21.831 Atomic orbital electron populations 1.23870 0.95753 1.02100 0.99876 1.22771 0.95886 0.97562 1.00443 1.21283 0.94275 0.96604 0.91282 1.58651 1.17291 0.99119 1.43516 1.22444 0.92936 0.94115 1.01822 1.22166 1.02171 0.92969 0.86615 1.74489 1.14138 1.02109 1.24907 1.74061 1.21993 1.10733 1.06819 1.25679 0.94529 0.89574 0.95864 1.20252 1.03186 0.88142 0.94638 1.19546 0.92305 0.94116 0.98280 1.21010 1.11919 1.01346 1.21857 0.90563 1.24952 0.97720 0.95099 0.95217 1.69896 1.36868 1.08348 1.38628 0.86842 0.83072 0.77563 0.82280 1.20333 1.21114 1.18955 1.46238 1.40705 1.14404 1.14534 1.22019 0.97582 1.03225 0.83398 0.88111 0.88442 0.86997 0.90189 0.91906 0.91309 0.90110 0.93566 0.88609 0.90517 0.97266 0.95647 0.92570 0.90116 0.88995 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 14.32 29.01 0.42 -1.02 16 2 C -0.15 -1.30 9.18 -36.03 -0.33 -1.63 16 3 C 0.09 1.06 5.31 -4.98 -0.03 1.03 16 4 N -0.46 -5.77 4.74 -183.76 -0.87 -6.65 16 5 C 0.03 0.35 9.28 60.07 0.56 0.91 16 6 C 0.32 5.15 6.39 -318.88 -2.04 3.11 16 7 N -0.31 -6.01 12.18 30.31 0.37 -5.64 16 8 N -0.30 -6.22 12.18 32.99 0.40 -5.81 16 9 C 0.21 4.03 7.32 -154.02 -1.13 2.90 16 10 C -0.02 -0.44 5.53 -27.88 -0.15 -0.59 16 11 C 0.00 -0.09 4.02 -27.88 -0.11 -0.20 16 12 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 13 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 16 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 20 N -0.47 -7.57 3.21 -121.46 -0.39 -7.96 16 21 C 0.08 0.97 11.01 59.85 0.66 1.63 16 22 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 23 H 0.10 0.81 7.84 -52.49 -0.41 0.40 16 24 H 0.11 0.81 6.98 -52.49 -0.37 0.44 16 25 H 0.08 1.01 7.71 -51.93 -0.40 0.61 16 26 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 27 H 0.07 0.71 8.11 -51.93 -0.42 0.28 16 28 H 0.08 0.60 6.70 -51.93 -0.35 0.25 16 29 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 31 H 0.08 1.33 7.37 -51.93 -0.38 0.95 16 32 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 33 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 37 H 0.09 0.99 7.41 -51.93 -0.38 0.60 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -32.86 313.88 -7.84 -40.71 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.60 Total: -3.32 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.59 Total: -6.65 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.28 Total: -52.44 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.86 -7.84 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355660951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.508 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds