Wall clock time and date at job start Sun Mar 29 2020 22:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99780 * 2 1 4 4 N 1.46897 * 109.47441 * 124.99717 * 3 2 1 5 5 C 1.46902 * 110.99827 * 66.04074 * 4 3 2 6 6 C 1.38586 * 111.00180 * 189.99905 * 4 3 2 7 7 N 1.31211 * 126.47044 * 299.47606 * 6 4 3 8 8 N 1.28526 * 109.86222 * 179.97438 * 7 6 4 9 9 C 1.30299 * 110.05101 * 0.02562 * 8 7 6 10 10 C 1.50697 * 126.34860 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46712 * 90.02483 * 10 9 8 12 12 C 1.50705 * 109.46904 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00031 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00135 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99927 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99813 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47307 * 89.99602 * 16 14 12 18 18 H 1.48500 * 109.46908 * 209.99684 * 16 14 12 19 19 H 1.48500 * 109.47053 * 329.99726 * 16 14 12 20 20 N 1.36450 * 126.47474 * 119.78876 * 6 4 3 21 21 C 1.46500 * 127.13547 * 0.02562 * 20 6 4 22 22 H 1.08002 * 119.99444 * 180.02562 * 1 2 3 23 23 H 1.08000 * 120.00448 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.99955 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47075 * 4.99671 * 3 2 1 26 26 H 1.09000 * 109.47024 * 245.00056 * 3 2 1 27 27 H 1.09004 * 109.46846 * 178.44093 * 5 4 3 28 28 H 1.08992 * 109.47697 * 298.44363 * 5 4 3 29 29 H 1.09005 * 109.46845 * 58.44826 * 5 4 3 30 30 H 1.08996 * 109.47220 * 330.02568 * 10 9 8 31 31 H 1.09001 * 109.47372 * 210.02195 * 10 9 8 32 32 H 1.08996 * 109.47209 * 60.00078 * 11 10 9 33 33 H 1.09002 * 109.47381 * 299.99617 * 11 10 9 34 34 H 0.97002 * 119.99917 * 179.97438 * 15 14 12 35 35 H 1.09007 * 109.47356 * 265.03632 * 21 20 6 36 36 H 1.09002 * 109.47693 * 25.03891 * 21 20 6 37 37 H 1.08999 * 109.47037 * 145.03986 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9963 1.3322 1.1345 5 6 4.0494 0.3206 0.9744 6 6 3.5419 2.5954 1.2990 7 7 4.2648 3.2528 0.4233 8 7 4.6044 4.3944 0.9064 9 6 4.1228 4.5317 2.1092 10 6 4.2982 5.7265 3.0107 11 6 3.1592 6.7191 2.7692 12 6 3.3349 7.9143 3.6702 13 1 4.1752 7.9614 4.3470 14 6 2.4236 8.9481 3.6297 15 7 2.5767 9.9909 4.4164 16 14 0.9706 8.8670 2.4586 17 1 -0.1765 8.2124 3.1375 18 1 0.5856 10.2422 2.0515 19 1 1.3475 8.0819 1.2558 20 7 3.4337 3.3881 2.4044 21 6 2.7238 3.0793 3.6481 22 1 -0.5399 -0.9354 0.0004 23 1 -0.5401 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3585 2.1316 0.0895 26 1 2.6213 1.4027 -0.9314 27 1 4.7417 0.3808 1.8141 28 1 3.5989 -0.6715 0.9453 29 1 4.5890 0.5020 0.0448 30 1 5.2518 6.2080 2.7942 31 1 4.2829 5.4021 4.0512 32 1 2.2056 6.2376 2.9856 33 1 3.1744 7.0436 1.7287 34 1 1.9358 10.7184 4.3876 35 1 1.7188 3.4994 3.6068 36 1 2.6609 1.9981 3.7718 37 1 3.2635 3.5106 4.4912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355660951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:47 Heat of formation + Delta-G solvation = 85.191478 kcal Electronic energy + Delta-G solvation = -18155.347971 eV Core-core repulsion = 15355.198982 eV Total energy + Delta-G solvation = -2800.148989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.06022 -39.00640 -36.41351 -35.65819 -34.53372 -33.65106 -30.58421 -28.59939 -28.18448 -27.36509 -25.79498 -23.42342 -21.91772 -21.58027 -20.57837 -19.06793 -18.14700 -17.65592 -17.20949 -16.47332 -16.28257 -15.83977 -15.33437 -15.10217 -14.73569 -14.48914 -14.33354 -14.08160 -13.74256 -13.34877 -13.16518 -12.98063 -12.75581 -12.69017 -12.27902 -12.03133 -12.00968 -11.86309 -11.61537 -11.43260 -11.12430 -10.78970 -10.57189 -10.03711 -9.86662 -8.31482 -6.35325 0.62687 1.09490 1.30228 1.35407 1.45702 1.47365 1.70098 2.32630 2.75774 3.03906 3.39981 3.73534 3.81304 3.97355 4.09423 4.11560 4.29064 4.37610 4.42786 4.51953 4.57663 4.65363 4.67535 4.71332 4.82392 4.86534 5.00010 5.03542 5.25658 5.39859 5.46642 5.54433 5.61007 5.67359 5.83430 6.15635 6.23123 6.71808 7.29436 7.62425 8.84549 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.005218 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.338861 B = 5365.112944 C = 5871.936144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.154 4.154 3 C 0.093 3.907 4 N -0.455 5.455 5 C 0.033 3.967 6 C 0.334 3.666 7 N -0.346 5.346 8 N -0.331 5.331 9 C 0.199 3.801 10 C -0.010 4.010 11 C 0.004 3.996 12 C -0.527 4.527 13 H 0.049 0.951 14 C 0.017 3.983 15 N -0.943 5.943 16 Si 0.938 3.062 17 H -0.261 1.261 18 H -0.282 1.282 19 H -0.264 1.264 20 N -0.464 5.464 21 C 0.072 3.928 22 H 0.123 0.877 23 H 0.090 0.910 24 H 0.134 0.866 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.019 0.981 33 H 0.008 0.992 34 H 0.268 0.732 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 -23.896 -4.464 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C -0.033 4.033 4 N -0.181 5.181 5 C -0.113 4.113 6 C -0.023 4.023 7 N -0.190 5.190 8 N -0.171 5.171 9 C -0.070 4.070 10 C -0.050 4.050 11 C -0.034 4.034 12 C -0.565 4.565 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.583 5.583 16 Si 0.762 3.238 17 H -0.185 1.185 18 H -0.208 1.208 19 H -0.188 1.188 20 N -0.156 5.156 21 C -0.069 4.069 22 H 0.141 0.859 23 H 0.108 0.892 24 H 0.151 0.849 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.038 0.962 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.692 -23.556 -5.229 24.410 hybrid contribution -0.741 0.630 0.098 0.978 sum -4.433 -22.926 -5.131 23.907 Atomic orbital electron populations 1.24056 0.95614 1.02861 0.98309 1.22721 0.96004 0.96716 1.01745 1.21289 0.93780 0.97880 0.90389 1.58980 1.17653 0.97495 1.43931 1.22569 0.92614 0.94851 1.01291 1.22620 1.00128 0.93712 0.85840 1.74416 1.16084 1.02208 1.26269 1.73957 1.23268 1.11974 1.07928 1.25344 0.95734 0.90405 0.95489 1.19985 1.01195 0.87707 0.96104 1.19376 0.94351 0.93624 0.96066 1.21303 1.10774 1.02802 1.21628 0.93248 1.25779 1.00699 0.94790 0.96854 1.70022 1.38334 1.09357 1.40593 0.85847 0.80056 0.77767 0.80126 1.18548 1.20759 1.18831 1.46427 1.40117 1.13359 1.15654 1.22372 0.97445 1.05119 0.81955 0.85909 0.89160 0.84862 0.91917 0.92940 0.91352 0.86662 0.94544 0.89319 0.88299 0.96249 0.97372 0.92328 0.89687 0.86478 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 14.32 67.78 0.97 -1.27 16 2 C -0.15 -2.23 9.18 25.64 0.24 -1.99 16 3 C 0.09 1.98 5.31 85.56 0.45 2.44 16 4 N -0.45 -10.43 4.74 -735.29 -3.49 -13.92 16 5 C 0.03 0.60 9.28 127.69 1.18 1.78 16 6 C 0.33 10.44 6.39 260.11 1.66 12.11 16 7 N -0.35 -13.28 12.18 -58.01 -0.71 -13.99 16 8 N -0.33 -13.99 12.18 -49.54 -0.60 -14.59 16 9 C 0.20 7.49 7.32 137.64 1.01 8.50 16 10 C -0.01 -0.39 5.53 29.85 0.17 -0.23 16 11 C 0.00 0.21 4.02 29.85 0.12 0.33 16 12 C -0.53 -29.31 9.66 25.60 0.25 -29.06 16 13 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 14 C 0.02 0.96 5.47 84.66 0.46 1.42 16 15 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 16 Si 0.94 44.40 27.47 68.60 1.88 46.28 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.26 -12.35 6.54 99.48 0.65 -11.70 16 20 N -0.46 -14.33 3.21 -538.18 -1.73 -16.06 16 21 C 0.07 1.54 11.01 127.77 1.41 2.95 16 22 H 0.12 1.10 8.06 -2.91 -0.02 1.07 16 23 H 0.09 1.31 7.84 -2.91 -0.02 1.29 16 24 H 0.13 1.38 6.98 -2.91 -0.02 1.36 16 25 H 0.06 1.53 7.71 -2.39 -0.02 1.52 16 26 H 0.05 1.22 8.11 -2.39 -0.02 1.20 16 27 H 0.07 1.24 8.11 -2.38 -0.02 1.22 16 28 H 0.12 1.27 6.70 -2.39 -0.02 1.25 16 29 H 0.04 0.73 8.13 -2.38 -0.02 0.71 16 30 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.10 3.32 7.37 -2.39 -0.02 3.30 16 32 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 33 H 0.01 0.40 7.20 -2.39 -0.02 0.38 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.12 1.90 8.11 -2.39 -0.02 1.88 16 37 H 0.10 1.96 7.41 -2.39 -0.02 1.94 16 Total: -1.00 -71.58 313.88 4.56 -67.02 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.98 Total: 5.70 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 7.92 Total: -3.03 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -6.23 Total: -115.97 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.28 kcal Total: -71.58 4.56 -67.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355660951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.214 kcal (2) G-P(sol) polarization free energy of solvation -71.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds