Wall clock time and date at job start Sun Mar 29 2020 23:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00427 * 2 1 4 4 H 1.48503 * 109.47044 * 239.99681 * 3 2 1 5 5 H 1.48498 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47160 * 119.99608 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99818 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93456 * 309.66590 * 9 7 2 11 11 C 1.53932 * 113.73345 * 81.23268 * 9 7 2 12 12 N 1.48304 * 86.06231 * 138.13032 * 11 9 7 13 13 C 1.46896 * 111.00332 * 222.41853 * 12 11 9 14 14 C 1.50696 * 109.46997 * 269.34947 * 13 12 11 15 15 Cl 1.73602 * 120.00150 * 295.00154 * 14 13 12 16 16 C 1.31293 * 120.00214 * 115.00396 * 14 13 12 17 17 Cl 1.73598 * 119.99577 * 0.02562 * 16 14 13 18 18 C 1.47962 * 90.75276 * 335.30996 * 12 11 9 19 19 H 0.97006 * 119.99605 * 0.02562 * 1 2 3 20 20 H 0.96700 * 114.00311 * 50.33594 * 10 9 7 21 21 H 1.09004 * 113.75677 * 252.50317 * 11 9 7 22 22 H 1.09000 * 113.76003 * 23.86640 * 11 9 7 23 23 H 1.08991 * 109.47431 * 29.35308 * 13 12 11 24 24 H 1.09001 * 109.46798 * 149.35006 * 13 12 11 25 25 H 1.07993 * 120.00288 * 179.97438 * 16 14 13 26 26 H 1.08997 * 113.75944 * 270.36826 * 18 12 11 27 27 H 1.09001 * 113.85960 * 139.01471 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.2446 -2.5611 1.0132 11 6 0.7557 -2.9286 -1.3922 12 7 1.1877 -4.2954 -1.0119 13 6 1.8744 -4.9601 -2.1274 14 6 0.8696 -5.7196 -2.9548 15 17 0.0202 -7.0680 -2.2664 16 6 0.6367 -5.3616 -4.1963 17 17 1.4866 -4.0136 -4.8849 18 6 2.1608 -3.7400 -0.0455 19 1 -0.4850 0.8401 -0.0004 20 1 -0.3474 -1.7966 1.0268 21 1 -0.3215 -2.8278 -1.5256 22 1 1.3291 -2.4995 -2.2139 23 1 2.3658 -4.2119 -2.7492 24 1 2.6193 -5.6522 -1.7348 25 1 -0.0831 -5.9061 -4.7894 26 1 3.1443 -3.5477 -0.4741 27 1 2.2070 -4.2859 0.8968 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460002782.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:50 Heat of formation + Delta-G solvation = -29.311489 kcal Electronic energy + Delta-G solvation = -14588.822391 eV Core-core repulsion = 11820.306894 eV Total energy + Delta-G solvation = -2768.515498 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.022 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.80165 -38.26170 -37.53144 -36.29166 -34.14982 -33.96427 -29.99595 -27.55697 -26.83566 -24.08280 -21.14433 -20.47915 -19.20684 -17.57636 -17.08209 -16.73907 -16.47400 -15.86237 -15.48977 -14.55614 -14.16469 -13.96331 -13.74734 -13.37792 -13.23835 -12.97577 -12.76232 -12.56770 -12.42148 -12.25853 -12.11454 -11.87479 -11.56862 -11.18080 -10.62173 -10.18668 -9.86104 -9.56280 -8.22484 -6.40089 0.47843 0.62747 1.43464 1.44852 1.52547 1.83939 2.38368 2.98436 3.11731 3.56892 3.98963 4.13696 4.22846 4.47691 4.52195 4.62893 4.68702 4.81369 4.92413 5.17494 5.41820 5.45097 5.76314 6.00993 6.24849 6.64929 7.32829 7.53108 8.82111 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.007013 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.350925 B = 3991.820134 C = 4608.614180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.030 3.970 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.560 4.560 8 H 0.065 0.935 9 C 0.217 3.783 10 O -0.584 6.584 11 C 0.006 3.994 12 N -0.471 5.471 13 C 0.038 3.962 14 C -0.048 4.048 15 Cl -0.049 7.049 16 C -0.098 4.098 17 Cl -0.069 7.069 18 C 0.019 3.981 19 H 0.273 0.727 20 H 0.381 0.619 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.182 0.818 26 H 0.082 0.918 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -9.060 -8.628 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.171 4.171 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.598 4.598 8 H 0.083 0.917 9 C 0.176 3.824 10 O -0.395 6.395 11 C -0.123 4.123 12 N -0.193 5.193 13 C -0.090 4.090 14 C -0.076 4.076 15 Cl -0.020 7.020 16 C -0.144 4.144 17 Cl -0.041 7.041 18 C -0.109 4.109 19 H 0.082 0.918 20 H 0.234 0.766 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.117 0.883 25 H 0.199 0.801 26 H 0.100 0.900 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.155 -10.015 -8.282 13.173 hybrid contribution 0.466 1.876 -0.430 1.980 sum 2.621 -8.138 -8.712 12.207 Atomic orbital electron populations 1.69507 1.07150 1.28594 1.50552 1.25763 0.95732 1.02542 0.93022 0.85539 0.78392 0.78422 0.78858 1.19476 1.20737 1.19748 1.21879 0.93842 0.91796 1.52313 0.91691 1.20124 0.85872 0.91907 0.84499 1.86031 1.47453 1.49237 1.56732 1.24523 0.99307 0.88112 1.00390 1.68558 1.25818 1.15722 1.09212 1.22029 0.94391 0.98472 0.94147 1.23077 0.97912 0.92669 0.93964 1.98372 1.75993 1.42587 1.85095 1.24597 1.00914 0.93335 0.95562 1.98384 1.76668 1.45067 1.83968 1.24070 0.95105 0.94988 0.96745 0.91768 0.76581 0.93193 0.91937 0.90640 0.88278 0.80132 0.89995 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.23 11.20 21.45 0.24 -48.99 15 2 C 0.03 1.54 5.40 84.66 0.46 1.99 15 3 Si 0.96 41.22 29.54 68.60 2.03 43.25 15 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 15 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 15 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 7 C -0.56 -29.44 8.61 25.60 0.22 -29.22 15 8 H 0.06 3.31 7.81 -2.91 -0.02 3.29 15 9 C 0.22 10.85 1.40 -10.89 -0.02 10.83 15 10 O -0.58 -31.88 13.48 -148.98 -2.01 -33.89 15 11 C 0.01 0.27 7.36 86.34 0.64 0.91 15 12 N -0.47 -18.73 6.15 -914.51 -5.62 -24.35 15 13 C 0.04 1.20 4.97 85.56 0.43 1.63 15 14 C -0.05 -1.34 6.06 25.36 0.15 -1.19 15 15 Cl -0.05 -1.32 28.99 -2.72 -0.08 -1.40 15 16 C -0.10 -2.39 10.54 67.49 0.71 -1.68 15 17 Cl -0.07 -1.81 26.97 -2.72 -0.07 -1.88 15 18 C 0.02 0.81 7.34 86.41 0.63 1.44 15 19 H 0.27 13.90 8.31 -92.70 -0.77 13.12 15 20 H 0.38 21.35 6.60 -74.06 -0.49 20.86 15 21 H 0.05 2.46 8.14 -2.38 -0.02 2.44 15 22 H 0.06 2.81 7.43 -2.39 -0.02 2.79 15 23 H 0.08 2.40 5.25 -2.39 -0.01 2.38 15 24 H 0.10 2.81 8.08 -2.39 -0.02 2.79 15 25 H 0.18 3.39 8.06 -2.91 -0.02 3.36 15 26 H 0.08 3.12 7.87 -2.39 -0.02 3.10 15 27 H 0.08 3.25 8.14 -2.39 -0.02 3.23 15 Total: -1.00 -56.02 265.02 -1.59 -57.61 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.71 Total: 24.93 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 3.22 Total: -15.28 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -5.38 Total: -73.34 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -2.01 Total: -33.89 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -3.13 SS G_CDS: -0.15 Total: -3.28 kcal Total: -56.02 -1.59 -57.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460002782.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.300 kcal (2) G-P(sol) polarization free energy of solvation -56.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds