Wall clock time and date at job start Sun Mar 29 2020 22:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35498 * 126.98199 * 2 1 4 4 N 1.30517 * 107.30640 * 180.22695 * 3 2 1 5 5 N 1.28595 * 109.67035 * 359.76592 * 4 3 2 6 6 C 1.30519 * 109.67688 * 0.02562 * 5 4 3 7 7 C 1.50695 * 126.34538 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47122 * 90.02593 * 7 6 5 9 9 C 1.53041 * 109.45837 * 295.02336 * 8 7 6 10 10 C 1.53198 * 109.31077 * 178.59730 * 9 8 7 11 11 N 1.46927 * 108.76400 * 54.65966 * 10 9 8 12 12 C 1.36934 * 120.63298 * 126.35822 * 11 10 9 13 13 H 1.08005 * 119.99638 * 331.86354 * 12 11 10 14 14 C 1.38805 * 120.00188 * 151.86254 * 12 11 10 15 15 N 1.31618 * 120.00275 * 343.06558 * 14 12 11 16 16 Si 1.86809 * 120.00060 * 163.06232 * 14 12 11 17 17 H 1.48503 * 109.46762 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46794 * 119.99919 * 16 14 12 19 19 H 1.48499 * 109.47216 * 240.00060 * 16 14 12 20 20 C 1.46927 * 118.73794 * 306.38429 * 11 10 9 21 21 C 1.53039 * 109.45970 * 174.97201 * 8 7 6 22 22 H 1.09000 * 109.47383 * 270.16036 * 1 2 3 23 23 H 1.09011 * 109.47180 * 30.16006 * 1 2 3 24 24 H 1.08994 * 109.47564 * 150.15869 * 1 2 3 25 25 H 1.08003 * 126.34391 * 359.97438 * 3 2 1 26 26 H 1.09000 * 109.47323 * 330.02490 * 7 6 5 27 27 H 1.08999 * 109.47092 * 210.02065 * 7 6 5 28 28 H 1.09003 * 109.45929 * 54.99800 * 8 7 6 29 29 H 1.08994 * 109.50133 * 298.56618 * 9 8 7 30 30 H 1.09002 * 109.49531 * 58.66423 * 9 8 7 31 31 H 1.09000 * 109.59946 * 294.87206 * 10 9 8 32 32 H 1.08997 * 109.70270 * 174.50722 * 10 9 8 33 33 H 0.96998 * 120.00588 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.58420 * 293.82126 * 20 11 10 35 35 H 1.09002 * 109.70527 * 173.46799 * 20 11 10 36 36 H 1.08996 * 109.49795 * 301.33033 * 21 8 7 37 37 H 1.09001 * 109.50223 * 61.43497 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5090 -0.6430 -0.0031 6 6 2.2800 -1.0824 0.0026 7 6 1.8476 -2.5260 0.0060 8 6 1.7068 -3.0128 1.4496 9 6 3.0783 -2.9987 2.1285 10 6 2.9280 -3.4533 3.5837 11 7 2.2586 -4.7610 3.6036 12 6 2.8197 -5.8221 4.2627 13 1 3.8921 -5.8810 4.3767 14 6 2.0103 -6.8219 4.7842 15 7 0.7222 -6.6072 4.9484 16 14 2.7492 -8.4724 5.2530 17 1 4.2076 -8.4591 4.9732 18 1 2.5255 -8.7219 6.6996 19 1 2.1022 -9.5478 4.4593 20 6 0.9759 -4.9088 2.9024 21 6 1.1481 -4.4376 1.4549 22 1 -0.3634 0.0029 1.0276 23 1 -0.3634 0.8886 -0.5164 24 1 -0.3634 -0.8913 -0.5113 25 1 1.9702 2.1170 -0.0004 26 1 2.5939 -3.1300 -0.5100 27 1 0.8888 -2.6193 -0.5040 28 1 1.0271 -2.3542 1.9903 29 1 3.7513 -3.6763 1.6032 30 1 3.4862 -1.9882 2.1035 31 1 2.3285 -2.7276 4.1334 32 1 3.9116 -3.5393 4.0453 33 1 0.1565 -7.3060 5.3124 34 1 0.2173 -4.3018 3.3965 35 1 0.6701 -5.9550 2.9122 36 1 0.1819 -4.4514 0.9506 37 1 1.8394 -5.1015 0.9360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473810694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:50 Heat of formation + Delta-G solvation = 90.764310 kcal Electronic energy + Delta-G solvation = -18662.125294 eV Core-core repulsion = 15862.217961 eV Total energy + Delta-G solvation = -2799.907333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.07278 -37.86323 -35.15157 -34.15460 -31.73517 -30.37969 -29.50148 -27.86196 -27.17329 -24.35235 -22.45512 -22.04497 -21.63610 -20.27908 -19.04549 -17.11161 -16.77962 -16.27244 -15.25653 -14.83052 -14.37364 -14.00413 -13.78119 -13.54380 -13.45169 -13.04224 -12.98576 -12.51917 -12.07807 -11.70189 -11.41882 -11.25758 -10.95321 -10.69431 -10.52089 -10.31314 -10.24048 -10.17739 -10.12483 -9.86098 -9.51139 -9.42304 -9.00820 -8.43857 -6.62174 -5.75744 -3.17358 1.83539 2.45521 2.96746 3.39302 3.47304 3.50342 4.34235 4.44017 4.53293 4.53520 4.80016 4.92109 5.11265 5.26545 5.39718 5.44446 5.48314 5.65112 5.74637 5.88194 6.00876 6.13982 6.18312 6.22430 6.39681 6.61823 6.65809 6.72740 6.78942 6.88762 6.91940 7.08686 7.38867 7.66967 7.83995 8.49220 8.81167 9.25727 9.89292 10.46467 11.32964 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.045932 B = 0.004985 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.456958 B = 5615.574565 C = 5885.297484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.479 5.479 3 C 0.136 3.864 4 N -0.300 5.300 5 N -0.293 5.293 6 C 0.194 3.806 7 C -0.034 4.034 8 C -0.070 4.070 9 C -0.125 4.125 10 C 0.146 3.854 11 N -0.592 5.592 12 C -0.248 4.248 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.906 5.906 16 Si 0.901 3.099 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.289 1.289 20 C 0.172 3.828 21 C -0.134 4.134 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.214 0.786 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.053 0.947 33 H 0.252 0.748 34 H 0.015 0.985 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 12.099 -11.181 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.170 5.170 3 C -0.151 4.151 4 N -0.139 5.139 5 N -0.133 5.133 6 C -0.073 4.073 7 C -0.074 4.074 8 C -0.090 4.090 9 C -0.164 4.164 10 C 0.020 3.980 11 N -0.315 5.315 12 C -0.377 4.377 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.551 5.551 16 Si 0.731 3.269 17 H -0.202 1.202 18 H -0.218 1.218 19 H -0.216 1.216 20 C 0.046 3.954 21 C -0.174 4.174 22 H 0.103 0.897 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.231 0.769 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.160 12.007 -11.113 16.663 hybrid contribution -1.310 -0.598 0.314 1.474 sum -4.470 11.410 -10.799 16.333 Atomic orbital electron populations 1.22105 0.75546 1.04970 1.04464 1.46209 1.09146 1.06906 1.54764 1.26335 0.87461 0.94796 1.06531 1.74225 1.18083 1.03728 1.17858 1.74304 1.17130 1.02742 1.19136 1.25079 0.87102 0.92533 1.02561 1.20363 1.01840 0.84979 1.00175 1.21024 0.98439 0.97593 0.91923 1.22042 0.95448 1.00331 0.98609 1.20897 0.96392 0.87963 0.92768 1.44066 1.22549 1.05826 1.59071 1.19264 0.91101 0.98703 1.28680 0.91665 1.25026 0.95940 0.99987 0.98802 1.70039 1.04382 1.32435 1.48215 0.86241 0.78703 0.84303 0.77683 1.20214 1.21795 1.21595 1.20740 0.87037 1.01466 0.86153 1.22253 0.98929 0.94467 1.01732 0.89741 0.89203 0.88977 0.76917 0.88439 0.90488 0.92336 0.92029 0.92788 0.97040 0.92879 0.93795 0.96723 0.89435 0.93386 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 11.04 59.85 0.66 1.12 16 2 N -0.48 -5.30 3.15 -122.69 -0.39 -5.69 16 3 C 0.14 1.57 12.74 -89.94 -1.15 0.42 16 4 N -0.30 -4.80 12.21 29.69 0.36 -4.44 16 5 N -0.29 -5.04 11.48 32.79 0.38 -4.66 16 6 C 0.19 2.76 6.49 -155.00 -1.01 1.76 16 7 C -0.03 -0.44 5.05 -27.88 -0.14 -0.59 16 8 C -0.07 -1.13 2.14 -90.58 -0.19 -1.33 16 9 C -0.13 -2.34 5.19 -26.61 -0.14 -2.48 16 10 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 11 N -0.59 -15.06 2.99 -172.31 -0.52 -15.57 16 12 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 13 H 0.07 1.81 7.89 -52.48 -0.41 1.39 16 14 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 15 N -0.91 -26.34 11.19 55.49 0.62 -25.72 16 16 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 21 C -0.13 -2.41 5.36 -26.61 -0.14 -2.56 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 24 H 0.09 0.51 7.19 -51.93 -0.37 0.13 16 25 H 0.21 1.40 8.06 -52.48 -0.42 0.98 16 26 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.08 0.80 7.21 -51.93 -0.37 0.42 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.01 6.77 -51.93 -0.35 0.66 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 1.18 7.93 -51.93 -0.41 0.76 16 33 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 298.98 15.07 4.51 4.51 Total: -1.00 -33.76 298.98 -8.05 -41.81 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -5.60 Total: -3.49 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.38 Total: -3.56 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.46 Total: -56.08 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.76 -8.05 -41.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473810694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.571 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds