Wall clock time and date at job start Sun Mar 29 2020 22:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.38581 * 110.99827 * 2 1 4 4 N 1.31218 * 126.47819 * 123.97848 * 3 2 1 5 5 N 1.28524 * 109.86259 * 179.97438 * 4 3 2 6 6 C 1.30300 * 110.05526 * 359.97438 * 5 4 3 7 7 C 1.50693 * 126.35095 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47314 * 89.97360 * 7 6 5 9 9 C 1.50702 * 109.47440 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99839 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00093 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00078 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99914 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47053 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46951 * 120.00104 * 13 11 9 16 16 H 1.48490 * 109.47112 * 240.00177 * 13 11 9 17 17 N 1.36454 * 126.46945 * 303.65950 * 3 2 1 18 18 C 1.46506 * 127.13840 * 0.04153 * 17 3 2 19 19 C 1.46902 * 110.99914 * 123.94910 * 2 1 3 20 20 C 1.53000 * 117.50126 * 66.05142 * 19 2 1 21 21 C 1.52997 * 117.50071 * 357.42373 * 19 2 1 22 22 H 1.09002 * 109.47120 * 296.04657 * 1 2 3 23 23 H 1.08992 * 109.46881 * 56.05535 * 1 2 3 24 24 H 1.09002 * 109.46397 * 176.04775 * 1 2 3 25 25 H 1.08994 * 109.47610 * 209.97577 * 7 6 5 26 26 H 1.09007 * 109.47051 * 329.97392 * 7 6 5 27 27 H 1.09005 * 109.47144 * 300.00140 * 8 7 6 28 28 H 1.09000 * 109.46740 * 60.00186 * 8 7 6 29 29 H 0.97000 * 120.00228 * 180.02562 * 12 11 9 30 30 H 1.09003 * 109.46949 * 89.99687 * 18 17 3 31 31 H 1.08993 * 109.46991 * 209.99378 * 18 17 3 32 32 H 1.08998 * 109.46640 * 329.99797 * 18 17 3 33 33 H 1.09002 * 115.55860 * 211.73592 * 19 2 1 34 34 H 1.08990 * 117.49990 * 145.01711 * 20 19 2 35 35 H 1.09004 * 117.49237 * 359.97438 * 20 19 2 36 36 H 1.08999 * 117.49685 * 0.02562 * 21 19 2 37 37 H 1.08997 * 117.50044 * 214.97900 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9656 1.2938 0.0000 4 7 2.7957 1.8108 0.8749 5 7 3.0457 3.0340 0.5699 6 6 2.3957 3.3672 -0.5092 7 6 2.4230 4.7118 -1.1889 8 6 3.5495 4.7374 -2.2239 9 6 3.5771 6.0823 -2.9033 10 1 2.8629 6.8430 -2.6244 11 6 4.5148 6.3421 -3.8801 12 7 5.3849 5.4161 -4.2193 13 14 4.5486 8.0090 -4.7227 14 1 3.4730 8.8675 -4.1648 15 1 5.8661 8.6539 -4.4914 16 1 4.3339 7.8308 -6.1811 17 7 1.6884 2.2689 -0.9134 18 6 0.8123 2.1623 -2.0828 19 6 1.9954 -0.7659 1.1377 20 6 1.7343 -2.2733 1.1559 21 6 0.9829 -1.3549 2.1219 22 1 -0.3633 0.4513 0.9233 23 1 -0.3633 0.5738 -0.8525 24 1 -0.3632 -1.0253 -0.0708 25 1 1.4689 4.8871 -1.6860 26 1 2.5942 5.4911 -0.4462 27 1 4.5036 4.5622 -1.7269 28 1 3.3782 3.9583 -2.9667 29 1 6.0448 5.5990 -4.9063 30 1 -0.2031 2.4428 -1.8028 31 1 1.1704 2.8293 -2.8669 32 1 0.8179 1.1355 -2.4484 33 1 2.9447 -0.4146 1.5421 34 1 2.5117 -2.9137 1.5724 35 1 1.1715 -2.6967 0.3239 36 1 -0.0738 -1.1745 1.9250 37 1 1.2661 -1.3913 3.1738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519970769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:46 Heat of formation + Delta-G solvation = 114.623064 kcal Electronic energy + Delta-G solvation = -18230.059616 eV Core-core repulsion = 15431.186876 eV Total energy + Delta-G solvation = -2798.872740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.60120 -38.99262 -35.01871 -34.51822 -33.35953 -31.54627 -28.94834 -27.58979 -26.36170 -25.01017 -22.62602 -22.39496 -21.68703 -20.19150 -19.62691 -17.41634 -16.58366 -16.37035 -16.06045 -15.26761 -14.61663 -14.52326 -14.22322 -13.59450 -13.26522 -13.07418 -12.83090 -12.58655 -12.31878 -12.05868 -11.67998 -11.31167 -11.24826 -11.10405 -11.00242 -10.67494 -10.58013 -10.23815 -9.95844 -9.87464 -9.72645 -9.27578 -9.19448 -8.41559 -7.85827 -6.05307 -4.09728 2.12712 2.45542 3.27264 3.28704 3.36681 3.40054 3.47797 3.85138 4.41053 4.50416 4.66759 4.77001 4.84515 4.87534 5.07030 5.10908 5.17289 5.30642 5.34904 5.41152 5.42165 5.51954 5.58373 5.70082 5.88436 5.92444 6.26886 6.33143 6.46163 6.61947 6.69352 6.92634 7.40565 7.55973 7.69693 7.92254 8.29435 8.96792 9.21780 9.55055 11.05780 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.049507 B = 0.004261 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.441140 B = 6569.112237 C = 6654.736491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.421 5.421 3 C 0.336 3.664 4 N -0.322 5.322 5 N -0.294 5.294 6 C 0.212 3.788 7 C -0.030 4.030 8 C 0.030 3.970 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.483 5.483 18 C 0.074 3.926 19 C 0.034 3.966 20 C -0.166 4.166 21 C -0.209 4.209 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.261 0.739 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.897 -12.813 6.760 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.142 5.142 3 C -0.021 4.021 4 N -0.166 5.166 5 N -0.132 5.132 6 C -0.056 4.056 7 C -0.070 4.070 8 C -0.008 4.008 9 C -0.562 4.562 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.210 1.210 17 N -0.178 5.178 18 C -0.069 4.069 19 C -0.075 4.075 20 C -0.204 4.204 21 C -0.248 4.248 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.158 0.842 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.707 -12.975 7.392 18.975 hybrid contribution -0.994 0.903 -1.196 1.799 sum -12.701 -12.071 6.196 18.586 Atomic orbital electron populations 1.22755 0.85039 1.03512 1.02085 1.58447 1.08434 1.05856 1.41497 1.22361 1.01101 0.88264 0.90333 1.74451 1.17092 1.03472 1.21636 1.73988 1.20927 1.05415 1.12919 1.25573 0.93231 0.91913 0.94841 1.20432 1.02240 0.85676 0.98661 1.19090 0.92374 0.97414 0.91907 1.21179 1.16170 0.98734 1.20157 0.92231 1.25016 0.95375 0.96990 0.96889 1.69984 1.18463 1.33355 1.31217 0.86502 0.78053 0.84052 0.79198 1.19627 1.20909 1.21037 1.46038 1.38408 1.10695 1.22652 1.22121 0.93145 1.04917 0.86707 1.22584 1.00475 0.93294 0.91117 1.23128 1.03343 0.92417 1.01545 1.23553 0.98479 1.05365 0.97363 0.93629 0.90548 0.89609 0.91253 0.89267 0.95567 0.96741 0.92904 0.90769 0.87994 0.89287 0.84233 0.87925 0.88431 0.88221 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.03 60.07 0.48 0.61 16 2 N -0.42 -5.70 5.00 -174.76 -0.87 -6.58 16 3 C 0.34 5.84 7.22 -318.87 -2.30 3.53 16 4 N -0.32 -6.58 10.82 30.31 0.33 -6.25 16 5 N -0.29 -6.54 12.18 32.99 0.40 -6.14 16 6 C 0.21 4.30 7.32 -154.01 -1.13 3.17 16 7 C -0.03 -0.62 5.36 -27.89 -0.15 -0.77 16 8 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 9 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 10 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 13 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 N -0.48 -8.26 3.21 -121.46 -0.39 -8.65 16 18 C 0.07 0.92 9.18 59.85 0.55 1.47 16 19 C 0.03 0.41 5.87 -67.71 -0.40 0.02 16 20 C -0.17 -1.50 10.07 -26.73 -0.27 -1.77 16 21 C -0.21 -1.93 9.43 -26.73 -0.25 -2.18 16 22 H 0.05 0.46 7.23 -51.93 -0.38 0.09 16 23 H 0.08 0.69 5.31 -51.93 -0.28 0.41 16 24 H 0.09 0.65 7.00 -51.93 -0.36 0.28 16 25 H 0.07 1.25 7.95 -51.93 -0.41 0.84 16 26 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.07 0.71 7.78 -51.93 -0.40 0.31 16 31 H 0.10 1.35 7.90 -51.93 -0.41 0.94 16 32 H 0.09 0.95 7.65 -51.93 -0.40 0.56 16 33 H 0.14 2.01 7.16 -51.93 -0.37 1.63 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.81 7.89 -51.93 -0.41 0.40 16 36 H 0.10 0.82 5.85 -51.93 -0.30 0.52 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -33.24 305.83 -9.61 -42.84 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.38 Total: -1.78 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -4.02 Total: -8.36 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.20 Total: -53.47 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.24 -9.61 -42.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519970769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.465 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds