Wall clock time and date at job start Sun Mar 29 2020 23:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 O 1.45202 * 109.47427 * 120.00030 * 2 1 3 13 13 C 1.34893 * 116.99949 * 270.00401 * 12 2 1 14 14 O 1.21604 * 120.00022 * 359.97438 * 13 12 2 15 15 C 1.46538 * 119.99833 * 179.97438 * 13 12 2 16 16 S 1.75792 * 125.50249 * 0.02806 * 15 13 12 17 17 C 1.70522 * 91.80367 * 179.97438 * 16 15 13 18 18 C 1.33339 * 111.43106 * 359.97438 * 17 16 15 19 19 C 1.38223 * 125.49812 * 179.72023 * 15 13 12 20 20 C 1.43201 * 123.65196 * 359.97438 * 19 15 13 21 21 N 5.78087 * 100.91070 * 62.39626 * 2 1 3 22 22 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 23 23 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 26 26 H 1.08004 * 124.27966 * 179.97438 * 17 16 15 27 27 H 1.08002 * 122.47159 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.6305 -0.5437 -4.4119 10 1 2.4881 -2.5651 -3.7122 11 1 1.3445 -0.9488 -5.1123 12 8 2.0141 -0.6845 1.1855 13 6 2.2182 0.0677 2.2865 14 8 1.9977 1.2632 2.2556 15 6 2.7055 -0.5558 3.5198 16 16 3.0704 -2.2631 3.7255 17 6 3.5261 -2.0252 5.3514 18 6 3.4095 -0.7456 5.7077 19 6 2.9581 0.1045 4.7075 20 6 2.7721 1.5130 4.8875 21 7 2.6242 2.6302 5.0302 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.7087 1.1613 -3.4844 26 1 3.8661 -2.8114 6.0091 27 1 3.6513 -0.3958 6.7005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523853472.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:58 Heat of formation + Delta-G solvation = -24.943564 kcal Electronic energy + Delta-G solvation = -15338.156465 eV Core-core repulsion = 12574.306931 eV Total energy + Delta-G solvation = -2763.849534 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.77034 -38.29307 -35.81768 -35.73236 -33.33033 -30.57651 -29.46453 -26.30385 -25.35616 -22.58347 -21.24594 -20.42532 -18.41738 -17.25087 -16.42761 -16.16239 -15.31336 -15.08056 -14.70665 -14.29720 -13.97792 -13.38865 -13.02446 -12.73443 -12.52707 -12.28136 -12.06057 -11.97583 -11.30829 -11.13600 -11.08375 -10.91662 -10.43196 -10.33572 -9.98714 -9.66151 -9.11209 -8.98492 -8.76554 -8.54282 -6.22917 -4.30588 0.08654 1.20814 1.68270 1.77239 2.88847 3.05399 3.21962 3.24699 3.29786 3.39022 3.63579 4.00947 4.28727 4.85839 4.93826 5.10413 5.36357 5.59810 5.80759 5.92336 6.55416 6.81857 6.83972 7.01261 7.51000 7.63777 7.64891 7.82729 8.05599 8.43050 8.78017 9.34829 10.84563 Molecular weight = 251.04amu Principal moments of inertia in cm(-1) A = 0.030615 B = 0.005960 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.354860 B = 4697.008891 C = 5321.600534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.049 0.951 4 C -0.523 4.523 5 H 0.071 0.929 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.913 3.087 9 H -0.278 1.278 10 H -0.270 1.270 11 H -0.284 1.284 12 O -0.347 6.347 13 C 0.517 3.483 14 O -0.494 6.494 15 C -0.199 4.199 16 S 0.322 5.678 17 C -0.254 4.254 18 C -0.115 4.115 19 C 0.023 3.977 20 C 0.272 3.728 21 N -0.396 5.396 22 H 0.101 0.899 23 H 0.039 0.961 24 H 0.017 0.983 25 H 0.267 0.733 26 H 0.178 0.822 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 -9.177 13.771 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.561 4.561 5 H 0.089 0.911 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.740 3.260 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.209 1.209 12 O -0.264 6.264 13 C 0.359 3.641 14 O -0.384 6.384 15 C -0.323 4.323 16 S 0.592 5.408 17 C -0.392 4.392 18 C -0.146 4.146 19 C 0.004 3.996 20 C -0.045 4.045 21 N -0.072 5.072 22 H 0.120 0.880 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.196 0.804 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.070 -8.316 12.832 15.823 hybrid contribution 0.342 0.569 0.089 0.669 sum 4.412 -7.747 12.920 15.698 Atomic orbital electron populations 1.22182 0.97278 1.00303 1.01608 1.20762 0.91565 0.94052 0.77100 0.93300 1.20988 1.32762 1.13656 0.88647 0.91116 1.24894 0.94851 0.95096 0.99102 1.69900 1.35809 1.22503 1.24320 0.86245 0.78566 0.79870 0.81299 1.20369 1.19508 1.20928 1.86583 1.75972 1.42930 1.20905 1.19548 0.75700 0.85218 0.83664 1.90889 1.47880 1.15474 1.84128 1.24428 1.11717 0.99731 0.96390 1.83577 1.54132 1.01042 1.02088 1.25336 1.09183 1.01326 1.03322 1.19691 1.02941 0.91722 1.00246 1.15296 1.04539 0.86936 0.92879 1.24636 0.94450 0.91685 0.93745 1.81155 1.07087 1.11209 1.07724 0.88039 0.94213 0.96431 0.92293 0.80415 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.33 37.16 0.35 -3.56 15 2 C 0.22 5.74 2.57 -27.89 -0.07 5.67 15 3 H 0.05 1.44 7.16 -51.93 -0.37 1.06 15 4 C -0.52 -14.30 8.90 -34.44 -0.31 -14.61 15 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.98 11.32 55.43 0.63 -24.35 15 8 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 15 9 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 12 O -0.35 -7.98 9.73 -41.02 -0.40 -8.38 15 13 C 0.52 10.90 7.90 34.08 0.27 11.16 15 14 O -0.49 -11.99 14.62 -19.34 -0.28 -12.27 15 15 C -0.20 -3.12 6.50 -36.24 -0.24 -3.35 15 16 S 0.32 3.45 22.91 -107.50 -2.46 0.98 15 17 C -0.25 -1.98 10.87 29.02 0.32 -1.66 15 18 C -0.11 -1.08 9.99 -41.08 -0.41 -1.50 15 19 C 0.02 0.32 5.74 -107.76 -0.62 -0.30 15 20 C 0.27 4.58 13.90 -22.47 -0.31 4.26 15 21 N -0.40 -7.45 18.54 41.84 0.78 -6.67 15 22 H 0.10 2.72 6.07 -51.93 -0.32 2.41 15 23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 26 H 0.18 0.75 8.06 -52.48 -0.42 0.33 15 27 H 0.15 1.04 8.06 -52.49 -0.42 0.61 15 LS Contribution 270.70 15.07 4.08 4.08 Total: -1.00 -31.74 270.70 -5.72 -37.46 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -1.92 Total: -4.23 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.12 Total: -2.27 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 1.40 Total: -31.02 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.68 Total: -20.65 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.46 Total: 0.98 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.74 -5.72 -37.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523853472.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.518 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds