Wall clock time and date at job start Sun Mar 29 2020 23:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 O 1.45202 * 109.47427 * 120.00030 * 2 1 3 13 13 C 1.34893 * 116.99949 * 270.00401 * 12 2 1 14 14 O 1.21604 * 120.00022 * 359.97438 * 13 12 2 15 15 C 1.46538 * 119.99833 * 179.97438 * 13 12 2 16 16 S 1.75792 * 125.50249 * 0.02806 * 15 13 12 17 17 C 1.70522 * 91.80367 * 179.97438 * 16 15 13 18 18 C 1.33339 * 111.43106 * 359.97438 * 17 16 15 19 19 C 1.38223 * 125.49812 * 179.72023 * 15 13 12 20 20 C 1.43201 * 123.65196 * 359.97438 * 19 15 13 21 21 N 5.78087 * 100.91070 * 62.39626 * 2 1 3 22 22 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 23 23 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 26 26 H 1.08004 * 124.27966 * 179.97438 * 17 16 15 27 27 H 1.08002 * 122.47159 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.6305 -0.5437 -4.4119 10 1 2.4881 -2.5651 -3.7122 11 1 1.3445 -0.9488 -5.1123 12 8 2.0141 -0.6845 1.1855 13 6 2.2182 0.0677 2.2865 14 8 1.9977 1.2632 2.2556 15 6 2.7055 -0.5558 3.5198 16 16 3.0704 -2.2631 3.7255 17 6 3.5261 -2.0252 5.3514 18 6 3.4095 -0.7456 5.7077 19 6 2.9581 0.1045 4.7075 20 6 2.7721 1.5130 4.8875 21 7 2.6242 2.6302 5.0302 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.7087 1.1613 -3.4844 26 1 3.8661 -2.8114 6.0091 27 1 3.6513 -0.3958 6.7005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523853472.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:58 Heat of formation + Delta-G solvation = -44.821302 kcal Electronic energy + Delta-G solvation = -15339.018428 eV Core-core repulsion = 12574.306931 eV Total energy + Delta-G solvation = -2764.711498 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.38428 -39.46685 -37.53402 -37.09518 -35.35860 -32.07892 -31.03341 -27.59537 -27.36961 -24.12255 -22.27048 -22.14272 -19.91530 -18.81038 -18.19221 -17.53055 -16.97481 -16.79101 -16.04699 -15.43010 -15.27221 -14.79435 -14.55246 -14.27956 -13.99502 -13.86481 -13.54635 -13.22993 -13.14360 -13.02441 -12.83980 -12.40646 -12.15339 -11.96267 -11.71741 -11.63288 -11.03404 -10.62268 -10.07902 -9.64036 -8.29449 -6.46930 -1.02605 0.24752 0.84588 0.92397 1.42713 1.45559 1.48984 1.56532 1.60604 1.80982 2.38192 2.40298 2.88496 3.02027 3.79739 3.96576 4.29192 4.49078 4.74408 4.75647 4.79460 4.99472 5.08496 5.12586 5.45560 5.57073 5.83872 5.99301 6.34859 6.55320 6.78080 7.24225 8.78619 Molecular weight = 251.04amu Principal moments of inertia in cm(-1) A = 0.030615 B = 0.005960 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.354860 B = 4697.008891 C = 5321.600534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.219 3.781 3 H 0.005 0.995 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.986 3.014 9 H -0.274 1.274 10 H -0.257 1.257 11 H -0.278 1.278 12 O -0.348 6.348 13 C 0.513 3.487 14 O -0.543 6.543 15 C -0.262 4.262 16 S 0.370 5.630 17 C -0.205 4.205 18 C -0.117 4.117 19 C 0.028 3.972 20 C 0.283 3.717 21 N -0.445 5.445 22 H 0.082 0.918 23 H 0.052 0.948 24 H 0.019 0.981 25 H 0.271 0.729 26 H 0.232 0.768 27 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.883 -12.564 15.238 20.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.166 3.834 3 H 0.023 0.977 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.809 3.191 9 H -0.199 1.199 10 H -0.180 1.180 11 H -0.203 1.203 12 O -0.264 6.264 13 C 0.359 3.641 14 O -0.436 6.436 15 C -0.384 4.384 16 S 0.640 5.360 17 C -0.343 4.343 18 C -0.146 4.146 19 C 0.006 3.994 20 C -0.033 4.033 21 N -0.122 5.122 22 H 0.100 0.900 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.249 0.751 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.431 -11.731 14.325 19.296 hybrid contribution -0.027 1.537 -0.217 1.552 sum 5.404 -10.195 14.108 18.226 Atomic orbital electron populations 1.22001 0.96611 1.00772 1.00696 1.20437 0.92129 0.92082 0.78734 0.97745 1.21286 1.33480 1.14079 0.89423 0.90652 1.25888 0.94657 0.95657 1.02323 1.70037 1.36611 1.23825 1.25272 0.85131 0.77943 0.79174 0.76873 1.19926 1.18027 1.20283 1.86545 1.76382 1.42638 1.20881 1.20390 0.74437 0.84889 0.84396 1.90852 1.50279 1.17529 1.84965 1.24084 1.16650 1.03232 0.94479 1.83455 1.52138 0.96519 1.03875 1.25968 1.04720 1.01717 1.01930 1.19936 1.02665 0.91489 1.00518 1.15696 1.04328 0.85738 0.93651 1.25296 0.93182 0.92530 0.92322 1.81137 1.08820 1.12764 1.09480 0.89993 0.92847 0.96223 0.92019 0.75141 0.79520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.45 9.33 71.98 0.67 -6.78 15 2 C 0.22 12.13 2.57 29.85 0.08 12.20 15 3 H 0.00 0.30 7.16 -2.38 -0.02 0.28 15 4 C -0.55 -30.46 8.90 25.60 0.23 -30.23 15 5 H 0.08 4.03 7.81 -2.91 -0.02 4.00 15 6 C 0.01 0.78 5.30 84.66 0.45 1.23 15 7 N -0.92 -53.12 11.32 21.45 0.24 -52.88 15 8 Si 0.99 42.20 29.54 68.60 2.03 44.23 15 9 H -0.27 -11.48 7.11 99.48 0.71 -10.78 15 10 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 11 H -0.28 -11.53 7.11 99.48 0.71 -10.82 15 12 O -0.35 -16.56 9.73 -58.07 -0.56 -17.13 15 13 C 0.51 22.61 7.90 69.99 0.55 23.16 15 14 O -0.54 -28.26 14.62 19.49 0.29 -27.97 15 15 C -0.26 -8.06 6.50 24.43 0.16 -7.90 15 16 S 0.37 6.64 22.91 -56.49 -1.29 5.35 15 17 C -0.21 -1.95 10.87 66.71 0.73 -1.22 15 18 C -0.12 -1.69 9.99 21.30 0.21 -1.48 15 19 C 0.03 0.73 5.74 -21.90 -0.13 0.61 15 20 C 0.28 9.69 13.90 88.33 1.23 10.92 15 21 N -0.44 -17.44 18.54 19.00 0.35 -17.08 15 22 H 0.08 4.59 6.07 -2.39 -0.01 4.57 15 23 H 0.05 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 25 H 0.27 14.62 8.31 -92.70 -0.77 13.85 15 26 H 0.23 -0.08 8.06 -2.91 -0.02 -0.11 15 27 H 0.19 1.49 8.06 -2.91 -0.02 1.47 15 Total: -1.00 -75.09 270.70 6.43 -68.66 By element: Atomic # 1 Polarization: -4.90 SS G_CDS: 1.21 Total: -3.69 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 4.18 Total: 0.51 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: 0.60 Total: -69.96 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -0.28 Total: -45.10 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -1.29 Total: 5.35 kcal Total: -75.09 6.43 -68.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523853472.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.840 kcal (2) G-P(sol) polarization free energy of solvation -75.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds