Wall clock time and date at job start Sun Mar 29 2020 23:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47382 * 2 1 4 4 C 1.50694 * 109.47226 * 239.99328 * 2 1 3 5 5 H 1.08004 * 120.00484 * 240.00176 * 4 2 1 6 6 C 1.37883 * 119.99964 * 60.00305 * 4 2 1 7 7 N 1.31516 * 119.99739 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46884 * 90.00405 * 8 6 4 10 10 H 1.48496 * 109.46818 * 209.99720 * 8 6 4 11 11 H 1.48498 * 109.47243 * 330.00133 * 8 6 4 12 12 O 1.45201 * 109.47086 * 119.99602 * 2 1 3 13 13 C 1.34786 * 116.99916 * 270.00350 * 12 2 1 14 14 O 1.21543 * 120.00089 * 359.97438 * 13 12 2 15 15 C 1.47162 * 119.99857 * 179.72443 * 13 12 2 16 16 C 1.36651 * 122.98179 * 359.97438 * 15 13 12 17 17 S 1.70594 * 110.54925 * 179.89095 * 16 15 13 18 18 C 1.75679 * 91.87158 * 0.31904 * 17 16 15 19 19 C 1.43196 * 125.04618 * 179.79777 * 18 17 16 20 20 N 8.42368 * 106.50614 * 88.15923 * 2 1 3 21 21 C 1.34845 * 109.90942 * 359.81493 * 18 17 16 22 22 H 1.09000 * 109.47069 * 300.00235 * 1 2 3 23 23 H 1.08999 * 109.46960 * 60.00523 * 1 2 3 24 24 H 1.08997 * 109.47258 * 180.02562 * 1 2 3 25 25 H 0.96999 * 119.99775 * 180.02562 * 7 6 4 26 26 H 1.08008 * 124.72485 * 0.02985 * 16 15 13 27 27 H 1.08005 * 123.18159 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 1.3448 -2.1619 -4.4122 10 1 2.4874 -0.1407 -5.1119 11 1 3.6309 -1.7570 -3.7117 12 8 2.0140 -0.6844 1.1856 13 6 2.2179 0.0673 2.2857 14 8 1.9976 1.2622 2.2547 15 6 2.7020 -0.5597 3.5259 16 6 2.9636 -1.8969 3.6305 17 16 3.5090 -2.2793 5.2010 18 6 3.3695 -0.6065 5.7191 19 6 3.6784 -0.1236 7.0313 20 7 3.9233 0.2594 8.0724 21 6 2.9281 0.1553 4.6978 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7082 1.1606 -3.4845 26 1 2.8441 -2.6117 2.8296 27 1 2.7650 1.2196 4.7817 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523905172.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:01 Heat of formation + Delta-G solvation = -29.225196 kcal Electronic energy + Delta-G solvation = -15061.936343 eV Core-core repulsion = 12297.901143 eV Total energy + Delta-G solvation = -2764.035200 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.84564 -37.96120 -36.49770 -35.59047 -33.31678 -30.72590 -29.45717 -25.72277 -25.36468 -23.68738 -20.92708 -19.36044 -19.12807 -17.21143 -16.78742 -15.85474 -15.57360 -15.19586 -14.62201 -14.30468 -14.14601 -13.44748 -13.06331 -12.90250 -12.73644 -12.55027 -12.17283 -11.90496 -11.40478 -11.27924 -11.12271 -10.88088 -10.44300 -10.32652 -9.84833 -9.61502 -9.18747 -8.97343 -8.85929 -8.53894 -6.23146 -4.30480 0.15649 0.85956 1.45452 1.54855 2.64453 2.99933 3.21509 3.26383 3.29728 3.42764 3.50762 3.82834 4.30014 4.87386 5.05450 5.10102 5.33338 5.61507 5.77414 6.02538 6.58355 6.84096 6.85208 7.07059 7.19051 7.53325 7.66679 7.86109 8.07354 8.52690 8.80326 9.35040 10.84254 Molecular weight = 251.04amu Principal moments of inertia in cm(-1) A = 0.044356 B = 0.004629 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.105873 B = 6047.579998 C = 6416.716458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.049 0.951 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.913 3.087 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.350 6.350 13 C 0.514 3.486 14 O -0.512 6.512 15 C -0.140 4.140 16 C -0.163 4.163 17 S 0.274 5.726 18 C -0.185 4.185 19 C 0.288 3.712 20 N -0.409 5.409 21 C -0.009 4.009 22 H 0.017 0.983 23 H 0.100 0.900 24 H 0.037 0.963 25 H 0.267 0.733 26 H 0.194 0.806 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -7.137 11.831 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.560 4.560 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.266 6.266 13 C 0.356 3.644 14 O -0.403 6.403 15 C -0.155 4.155 16 C -0.302 4.302 17 S 0.541 5.459 18 C -0.304 4.304 19 C -0.028 4.028 20 N -0.087 5.087 21 C -0.043 4.043 22 H 0.036 0.964 23 H 0.118 0.882 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.211 0.789 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.221 -7.445 13.934 16.352 hybrid contribution -0.413 0.925 -2.150 2.377 sum 3.808 -6.520 11.783 13.995 Atomic orbital electron populations 1.22176 0.97425 1.00195 1.01549 1.20698 0.91452 0.94030 0.77374 0.93363 1.20998 1.32663 1.13546 0.88784 0.91259 1.24895 0.94926 0.95083 0.99100 1.69895 1.35923 1.22469 1.24268 0.86260 0.79273 0.79127 0.81394 1.20354 1.20956 1.19620 1.86539 1.75849 1.43162 1.21054 1.20211 0.75037 0.85082 0.84064 1.90810 1.48756 1.16039 1.84723 1.18471 1.09732 0.92863 0.94398 1.26485 1.00469 1.00258 1.03020 1.83110 1.58771 1.02812 1.01180 1.19745 1.19090 0.99422 0.92183 1.24193 0.93322 0.93997 0.91248 1.81296 1.09642 1.06987 1.10736 1.20330 0.93219 1.01858 0.88876 0.96396 0.88158 0.94368 0.92327 0.78875 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.33 37.16 0.35 -3.45 15 2 C 0.22 5.57 2.56 -27.89 -0.07 5.50 15 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 15 4 C -0.52 -14.06 8.90 -34.44 -0.31 -14.36 15 5 H 0.07 1.82 7.81 -52.48 -0.41 1.41 15 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 15 7 N -0.89 -24.58 11.32 55.43 0.63 -23.95 15 8 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 15 9 H -0.28 -6.11 7.11 56.52 0.40 -5.70 15 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 12 O -0.35 -7.75 9.49 -40.73 -0.39 -8.14 15 13 C 0.51 10.15 7.89 34.35 0.27 10.42 15 14 O -0.51 -11.56 15.95 -19.30 -0.31 -11.86 15 15 C -0.14 -2.00 5.82 -106.52 -0.62 -2.62 15 16 C -0.16 -1.78 10.58 30.16 0.32 -1.46 15 17 S 0.27 2.24 23.03 -107.50 -2.48 -0.24 15 18 C -0.18 -1.94 6.24 -38.86 -0.24 -2.18 15 19 C 0.29 3.34 15.79 -22.48 -0.35 2.99 15 20 N -0.41 -5.49 18.54 41.84 0.78 -4.71 15 21 C -0.01 -0.10 9.71 -40.46 -0.39 -0.50 15 22 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 15 23 H 0.10 2.63 6.07 -51.93 -0.32 2.32 15 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 26 H 0.19 1.92 8.00 -52.48 -0.42 1.50 15 27 H 0.16 1.97 7.99 -52.48 -0.42 1.55 15 LS Contribution 272.91 15.07 4.11 4.11 Total: -1.00 -30.10 272.91 -5.74 -35.83 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -1.92 Total: -2.36 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.15 Total: -4.08 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 1.40 Total: -28.66 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.69 Total: -20.00 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.48 Total: -0.24 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.10 -5.74 -35.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523905172.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.608 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds