Wall clock time and date at job start Sun Mar 29 2020 23:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31213 * 1 3 3 Si 1.86802 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47222 * 270.00309 * 3 2 1 5 5 H 1.48502 * 109.47040 * 29.99806 * 3 2 1 6 6 H 1.48498 * 109.47467 * 150.00082 * 3 2 1 7 7 C 1.39284 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00103 * 179.97438 * 7 2 1 9 9 N 1.36493 * 119.99583 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99572 * 180.02562 * 9 7 2 11 11 O 1.21792 * 120.00325 * 359.97438 * 10 9 7 12 12 C 1.41832 * 119.99650 * 180.02562 * 10 9 7 13 13 C 1.35494 * 120.00062 * 179.97438 * 12 10 9 14 14 C 1.46170 * 119.99815 * 179.97438 * 13 12 10 15 15 C 1.38248 * 125.81728 * 180.02562 * 14 13 12 16 16 C 1.39674 * 106.85842 * 179.72271 * 15 14 13 17 17 C 1.37891 * 106.91024 * 0.41168 * 16 15 14 18 18 C 1.46722 * 125.77808 * 179.84906 * 17 16 15 19 19 O 1.21593 * 120.00082 * 359.71293 * 18 17 16 20 20 O 1.34890 * 120.00051 * 179.71504 * 18 17 16 21 21 O 1.34587 * 125.82667 * 359.97438 * 14 13 12 22 22 H 0.97000 * 120.00560 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00130 * 0.02562 * 9 7 2 24 24 H 1.07999 * 120.00235 * 359.97438 * 12 10 9 25 25 H 1.07999 * 119.99703 * 359.97438 * 13 12 10 26 26 H 1.07994 * 126.57370 * 359.97438 * 15 14 13 27 27 H 1.07997 * 126.54106 * 180.25524 * 16 15 14 28 28 H 0.96700 * 117.00163 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3121 0.0000 0.0000 3 14 2.2462 1.6177 0.0000 4 1 2.4936 2.0465 -1.4001 5 1 1.4436 2.6527 0.7000 6 1 3.5437 1.4402 0.7000 7 6 2.0086 -1.2062 -0.0005 8 1 3.0886 -1.2062 -0.0010 9 7 1.3261 -2.3882 -0.0005 10 6 2.0001 -3.5555 -0.0005 11 8 3.2180 -3.5555 -0.0010 12 6 1.2909 -4.7838 -0.0011 13 6 1.9684 -5.9572 -0.0016 14 6 1.2374 -7.2230 -0.0016 15 6 1.8037 -8.4842 -0.0016 16 6 0.7502 -9.4012 0.0049 17 6 -0.4185 -8.6695 -0.0009 18 6 -1.7773 -9.2232 -0.0004 19 8 -1.9429 -10.4278 0.0003 20 8 -2.8427 -8.3959 -0.0006 21 8 -0.1015 -7.3596 -0.0006 22 1 -0.4851 0.8400 0.0004 23 1 0.3561 -2.3882 -0.0005 24 1 0.2109 -4.7838 -0.0011 25 1 3.0483 -5.9572 -0.0020 26 1 2.8585 -8.7160 -0.0020 27 1 0.8349 -10.4779 0.0105 28 1 -3.7179 -8.8072 -0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610021.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:21 Heat of formation + Delta-G solvation = -120.657903 kcal Electronic energy + Delta-G solvation = -16775.294722 eV Core-core repulsion = 13564.541831 eV Total energy + Delta-G solvation = -3210.752891 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.68495 -41.01809 -40.36222 -37.28881 -36.30713 -34.78953 -34.16355 -33.43607 -30.69180 -27.72659 -25.90021 -23.67519 -22.70678 -21.74283 -20.59021 -19.84831 -19.43698 -18.75209 -18.13131 -17.67972 -16.74607 -16.49289 -16.30117 -15.71610 -15.47100 -14.98768 -14.80374 -14.23848 -14.11492 -13.73298 -13.44381 -13.17348 -12.99974 -12.76188 -12.51483 -12.15957 -12.12066 -11.73440 -11.49452 -11.04650 -10.55988 -10.17124 -9.24341 -8.61675 -6.00086 -0.83231 0.30984 1.28079 1.35686 1.41871 1.54148 1.56202 1.76721 2.15636 2.25571 2.47620 3.12376 3.24298 3.69874 3.75928 4.07047 4.15230 4.39698 4.44989 4.62772 4.81355 4.99390 5.22059 5.30380 5.31873 5.35028 5.80295 5.90587 6.46284 6.81486 6.98897 7.38981 7.98819 8.54809 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.038662 B = 0.003899 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.053779 B = 7180.035971 C = 7894.246768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.010 4.010 3 Si 1.002 2.998 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.333 4.333 8 H 0.089 0.911 9 N -0.544 5.544 10 C 0.445 3.555 11 O -0.644 6.644 12 C -0.154 4.154 13 C -0.034 4.034 14 C 0.051 3.949 15 C -0.184 4.184 16 C -0.089 4.089 17 C -0.100 4.100 18 C 0.580 3.420 19 O -0.518 6.518 20 O -0.504 6.504 21 O -0.160 6.160 22 H 0.285 0.715 23 H 0.398 0.602 24 H 0.133 0.867 25 H 0.168 0.832 26 H 0.198 0.802 27 H 0.192 0.808 28 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 -15.276 0.001 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.213 4.213 3 Si 0.824 3.176 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.463 4.463 8 H 0.107 0.893 9 N -0.176 5.176 10 C 0.238 3.762 11 O -0.536 6.536 12 C -0.175 4.175 13 C -0.056 4.056 14 C -0.001 4.001 15 C -0.203 4.203 16 C -0.108 4.108 17 C -0.150 4.150 18 C 0.425 3.575 19 O -0.410 6.410 20 O -0.318 6.318 21 O -0.056 6.056 22 H 0.095 0.905 23 H 0.233 0.767 24 H 0.151 0.849 25 H 0.185 0.815 26 H 0.215 0.785 27 H 0.209 0.791 28 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -3.215 -14.952 0.006 15.294 hybrid contribution -0.904 0.628 -0.006 1.101 sum -4.119 -14.324 0.000 14.904 Atomic orbital electron populations 1.69582 1.07305 1.30280 1.47029 1.26311 0.96561 1.03053 0.95338 0.84802 0.77980 0.75872 0.78974 1.19252 1.19240 1.19302 1.19863 0.93378 0.83821 1.49255 0.89303 1.41983 1.09659 1.05336 1.60633 1.17227 0.87810 0.85057 0.86129 1.90624 1.14991 1.88236 1.59754 1.22212 1.00873 0.92627 1.01821 1.21503 0.99481 0.86380 0.98210 1.21598 0.79470 0.96204 1.02831 1.22608 1.02447 0.88867 1.06330 1.22455 0.88702 1.02356 0.97271 1.21364 0.93498 0.81384 1.18786 1.18787 0.83335 0.83389 0.71949 1.90973 1.85971 1.15554 1.48507 1.84667 1.19325 1.43069 1.84787 1.84163 1.24430 1.26754 1.70238 0.90519 0.76737 0.84868 0.81511 0.78517 0.79056 0.69678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.37 13.04 21.72 0.28 -47.09 15 2 C -0.01 -0.53 5.51 85.04 0.47 -0.06 15 3 Si 1.00 41.10 29.55 68.60 2.03 43.12 15 4 H -0.27 -10.61 7.11 99.48 0.71 -9.91 15 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 6 H -0.27 -11.03 7.11 99.48 0.71 -10.33 15 7 C -0.33 -18.59 9.67 84.22 0.81 -17.78 15 8 H 0.09 5.22 7.15 -2.91 -0.02 5.20 15 9 N -0.54 -28.22 5.26 -314.99 -1.66 -29.88 15 10 C 0.45 21.75 7.52 85.13 0.64 22.39 15 11 O -0.64 -35.62 15.68 -4.64 -0.07 -35.69 15 12 C -0.15 -5.83 9.45 22.52 0.21 -5.62 15 13 C -0.03 -1.08 9.60 23.70 0.23 -0.85 15 14 C 0.05 1.38 7.02 24.33 0.17 1.55 15 15 C -0.18 -3.72 10.88 22.62 0.25 -3.47 15 16 C -0.09 -1.76 10.63 22.53 0.24 -1.53 15 17 C -0.10 -2.47 7.21 24.41 0.18 -2.30 15 18 C 0.58 13.27 8.31 70.04 0.58 13.85 15 19 O -0.52 -13.13 17.65 19.53 0.34 -12.79 15 20 O -0.50 -9.32 13.44 -56.59 -0.76 -10.08 15 21 O -0.16 -4.60 10.29 -9.67 -0.10 -4.70 15 22 H 0.28 13.81 8.30 -92.71 -0.77 13.04 15 23 H 0.40 19.69 7.85 -92.71 -0.73 18.96 15 24 H 0.13 4.57 7.78 -2.91 -0.02 4.55 15 25 H 0.17 5.16 7.46 -2.91 -0.02 5.13 15 26 H 0.20 2.66 8.06 -2.91 -0.02 2.64 15 27 H 0.19 2.74 8.06 -2.91 -0.02 2.72 15 28 H 0.44 3.15 9.11 -74.06 -0.67 2.48 15 Total: -1.00 -69.74 275.82 3.68 -66.06 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.16 Total: 24.85 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 3.78 Total: 6.19 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.37 Total: -76.97 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: -0.59 Total: -63.26 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Total: -69.74 3.68 -66.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610021.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.597 kcal (2) G-P(sol) polarization free energy of solvation -69.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds