Wall clock time and date at job start Sun Mar 29 2020 23:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31213 * 1 3 3 Si 1.86797 * 120.00517 * 2 1 4 4 H 1.48497 * 109.47099 * 270.00001 * 3 2 1 5 5 H 1.48499 * 109.46997 * 29.99938 * 3 2 1 6 6 H 1.48496 * 109.47201 * 149.99821 * 3 2 1 7 7 C 1.39287 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00233 * 359.97438 * 7 2 1 9 9 N 1.36488 * 119.99955 * 180.02562 * 7 2 1 10 10 C 1.34784 * 119.99794 * 179.97438 * 9 7 2 11 11 O 1.21792 * 120.00023 * 0.27381 * 10 9 7 12 12 C 1.41840 * 119.99867 * 179.97438 * 10 9 7 13 13 C 1.35482 * 119.99937 * 173.86763 * 12 10 9 14 14 C 1.46178 * 119.99917 * 349.74172 * 13 12 10 15 15 C 1.38248 * 125.81902 * 139.76062 * 14 13 12 16 16 C 1.39669 * 106.85769 * 179.88042 * 15 14 13 17 17 C 1.37896 * 106.90789 * 0.37204 * 16 15 14 18 18 C 1.46724 * 125.77323 * 179.78396 * 17 16 15 19 19 O 1.21591 * 120.00412 * 0.02562 * 18 17 16 20 20 O 1.34898 * 119.99732 * 180.02562 * 18 17 16 21 21 O 1.34589 * 125.82309 * 320.06363 * 14 13 12 22 22 H 0.97002 * 119.99696 * 359.97438 * 1 2 3 23 23 H 0.96997 * 120.00437 * 359.97438 * 9 7 2 24 24 H 1.08003 * 120.00077 * 353.87692 * 12 10 9 25 25 H 1.08000 * 120.00239 * 169.74188 * 13 12 10 26 26 H 1.08001 * 126.56851 * 0.02562 * 15 14 13 27 27 H 1.08002 * 126.54464 * 180.12271 * 16 15 14 28 28 H 0.96695 * 116.99578 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3121 0.0000 0.0000 3 14 2.2463 1.6176 0.0000 4 1 2.4938 2.0463 -1.4000 5 1 1.4438 2.6526 0.7000 6 1 3.5437 1.4400 0.7001 7 6 2.0085 -1.2063 -0.0005 8 1 1.4685 -2.1416 -0.0005 9 7 3.3734 -1.2064 0.0000 10 6 4.0472 -2.3737 0.0000 11 8 3.4382 -3.4284 -0.0055 12 6 5.4656 -2.3738 0.0000 13 6 6.1429 -3.5404 0.1253 14 6 5.4295 -4.7649 0.4836 15 6 5.6580 -6.0199 -0.0493 16 6 4.7628 -6.8932 0.5725 17 6 4.0158 -6.1409 1.4544 18 6 2.9467 -6.6476 2.3222 19 8 2.6542 -7.8276 2.3009 20 8 2.2883 -5.8042 3.1437 21 8 4.4342 -4.8618 1.3845 22 1 -0.4850 0.8401 0.0004 23 1 3.8585 -0.3664 0.0004 24 1 6.0057 -1.4438 -0.0998 25 1 7.2100 -3.5658 -0.0395 26 1 6.3902 -6.2763 -0.8007 27 1 4.6702 -7.9542 0.3935 28 1 1.5922 -6.1844 3.6968 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610022.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:22 Heat of formation + Delta-G solvation = -79.791709 kcal Electronic energy + Delta-G solvation = -17797.686350 eV Core-core repulsion = 14588.705550 eV Total energy + Delta-G solvation = -3208.980799 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.00308 -39.59206 -38.60291 -35.89145 -34.50287 -33.09752 -32.43760 -31.94704 -29.12319 -25.97366 -24.10809 -21.99007 -21.21777 -20.24237 -19.26857 -18.31745 -17.93628 -17.22459 -16.54081 -15.91866 -15.23339 -14.76078 -14.43877 -13.79971 -13.56288 -13.39178 -13.23889 -12.79737 -12.75800 -12.51978 -12.13121 -11.80277 -11.38699 -11.37452 -10.74807 -10.70591 -10.19183 -9.92369 -9.56243 -9.44341 -8.65401 -8.36817 -7.70021 -6.59444 -3.92468 0.81377 1.67161 2.84941 2.88946 2.92369 2.97757 3.02129 3.27918 3.67678 3.89511 4.19237 4.68994 4.93913 5.14526 5.20350 5.45705 5.54729 5.71784 5.91327 6.02873 6.20795 6.40238 6.50564 6.58776 6.76697 7.33058 7.41739 7.98781 8.11181 8.38194 8.75609 9.20188 9.75325 10.51581 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.006552 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.575805 B = 4272.420642 C = 5119.573373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.041 3.959 3 Si 0.884 3.116 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.286 4.286 8 H 0.125 0.875 9 N -0.558 5.558 10 C 0.438 3.562 11 O -0.571 6.571 12 C -0.136 4.136 13 C -0.086 4.086 14 C 0.110 3.890 15 C -0.233 4.233 16 C -0.109 4.109 17 C -0.078 4.078 18 C 0.576 3.424 19 O -0.514 6.514 20 O -0.498 6.498 21 O -0.100 6.100 22 H 0.280 0.720 23 H 0.372 0.628 24 H 0.126 0.874 25 H 0.152 0.848 26 H 0.154 0.846 27 H 0.156 0.844 28 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.698 -4.407 2.202 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.166 4.166 3 Si 0.709 3.291 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.416 4.416 8 H 0.143 0.857 9 N -0.193 5.193 10 C 0.230 3.770 11 O -0.457 6.457 12 C -0.158 4.158 13 C -0.109 4.109 14 C 0.055 3.945 15 C -0.252 4.252 16 C -0.129 4.129 17 C -0.130 4.130 18 C 0.422 3.578 19 O -0.406 6.406 20 O -0.308 6.308 21 O 0.009 5.991 22 H 0.091 0.909 23 H 0.206 0.794 24 H 0.144 0.856 25 H 0.169 0.831 26 H 0.172 0.828 27 H 0.174 0.826 28 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 11.097 -4.825 2.142 12.288 hybrid contribution 0.024 1.172 0.149 1.182 sum 11.121 -3.653 2.290 11.927 Atomic orbital electron populations 1.69543 1.06060 1.28407 1.45111 1.25255 0.95628 0.98572 0.97142 0.86586 0.80006 0.83238 0.79282 1.19182 1.19717 1.19061 1.19642 0.79760 0.96915 1.45274 0.85718 1.42297 1.07756 1.06806 1.62424 1.16655 0.87499 0.84786 0.88054 1.90751 1.69251 1.29729 1.55994 1.22548 0.95778 0.98087 0.99426 1.21175 0.98116 0.88611 1.02962 1.21100 0.87220 0.94847 0.91288 1.21907 1.05701 0.91535 1.06081 1.21837 0.95294 1.00438 0.95291 1.20738 1.02497 0.83585 1.06130 1.19009 0.78899 0.82924 0.76922 1.90924 1.65502 1.16982 1.67191 1.84774 1.50071 1.43784 1.52158 1.84408 1.39882 1.26344 1.48509 0.90945 0.79439 0.85584 0.83075 0.82789 0.82643 0.72951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.78 13.95 55.51 0.77 -23.00 15 2 C 0.04 1.06 5.50 -17.43 -0.10 0.97 15 3 Si 0.88 18.31 27.74 -169.99 -4.72 13.60 15 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 6 H -0.27 -5.00 6.52 56.52 0.37 -4.64 15 7 C -0.29 -7.86 10.16 -15.09 -0.15 -8.02 15 8 H 0.13 3.96 7.37 -52.49 -0.39 3.57 15 9 N -0.56 -13.04 5.06 -13.56 -0.07 -13.11 15 10 C 0.44 10.02 7.33 -14.88 -0.11 9.91 15 11 O -0.57 -15.28 12.09 -19.46 -0.24 -15.52 15 12 C -0.14 -2.29 9.86 -39.19 -0.39 -2.68 15 13 C -0.09 -1.29 10.15 -37.38 -0.38 -1.67 15 14 C 0.11 1.99 5.44 -36.39 -0.20 1.80 15 15 C -0.23 -3.65 10.88 -39.04 -0.42 -4.07 15 16 C -0.11 -1.81 10.63 -39.17 -0.42 -2.23 15 17 C -0.08 -1.51 7.21 -36.28 -0.26 -1.77 15 18 C 0.58 10.61 8.31 34.16 0.28 10.90 15 19 O -0.51 -9.70 17.65 -19.33 -0.34 -10.04 15 20 O -0.50 -8.28 13.45 -42.56 -0.57 -8.85 15 21 O -0.10 -2.12 8.04 -22.45 -0.18 -2.30 15 22 H 0.28 7.11 8.30 -40.82 -0.34 6.77 15 23 H 0.37 7.48 5.72 -40.82 -0.23 7.24 15 24 H 0.13 1.58 8.06 -52.48 -0.42 1.16 15 25 H 0.15 1.51 8.06 -52.49 -0.42 1.09 15 26 H 0.15 1.84 8.06 -52.49 -0.42 1.42 15 27 H 0.16 2.19 8.06 -52.49 -0.42 1.76 15 28 H 0.41 4.32 9.11 45.56 0.42 4.74 15 LS Contribution 266.92 15.07 4.02 4.02 Total: -1.00 -34.67 266.92 -4.52 -39.19 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -1.06 Total: 12.88 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -2.14 Total: 3.13 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.71 Total: -36.11 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.33 Total: -36.71 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -4.72 Total: 13.60 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.67 -4.52 -39.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610022.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.602 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds