Wall clock time and date at job start Sun Mar 29 2020 23:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.44620 * 123.58080 * 36.77896 * 3 2 1 5 5 C 1.32596 * 113.14694 * 179.97438 * 4 3 2 6 6 S 1.75469 * 110.78672 * 359.97438 * 5 4 3 7 7 C 1.36995 * 123.58338 * 216.75261 * 3 2 1 8 8 N 1.38812 * 124.64426 * 0.02562 * 7 3 2 9 9 C 1.34778 * 119.99501 * 179.97438 * 8 7 3 10 10 O 1.21582 * 120.00374 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99384 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99480 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47183 * 180.02562 * 12 11 9 14 14 H 1.08008 * 119.99708 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00280 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00020 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00034 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47018 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47094 * 120.00583 * 17 15 13 20 20 H 1.48499 * 109.47023 * 240.00542 * 17 15 13 21 21 H 1.07995 * 123.43110 * 0.02562 * 4 3 2 22 22 H 1.08003 * 124.60893 * 180.26945 * 5 4 3 23 23 H 0.96999 * 119.99802 * 0.02562 * 8 7 3 24 24 H 0.96999 * 120.00510 * 0.02562 * 11 9 8 25 25 H 1.09000 * 109.47109 * 300.00015 * 12 11 9 26 26 H 1.08995 * 109.47333 * 59.99990 * 12 11 9 27 27 H 0.96998 * 119.99888 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3684 -0.9640 -0.7214 5 6 4.6723 -0.7708 -0.5780 6 16 4.9870 0.6127 0.4544 7 6 3.3254 0.9154 0.6829 8 7 2.8101 1.9477 1.4546 9 6 3.6438 2.7961 2.0885 10 8 4.8471 2.6575 1.9840 11 7 3.1434 3.7987 2.8374 12 6 4.0496 4.7212 3.5260 13 6 3.2440 5.7411 4.2887 14 1 2.1648 5.7054 4.2634 15 6 3.8844 6.7191 5.0196 16 7 5.1985 6.7623 5.0508 17 14 2.8857 7.9829 5.9656 18 1 1.4379 7.7175 5.7691 19 1 3.2136 7.8916 7.4110 20 1 3.2118 9.3439 5.4690 21 1 2.9470 -1.7603 -1.3169 22 1 5.4369 -1.3791 -1.0384 23 1 1.8500 2.0580 1.5383 24 1 2.1833 3.9095 2.9205 25 1 4.6783 4.1628 4.2195 26 1 4.6778 5.2279 2.7934 27 1 5.6491 7.4501 5.5653 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673282789.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:05 Heat of formation + Delta-G solvation = 26.977930 kcal Electronic energy + Delta-G solvation = -14929.227894 eV Core-core repulsion = 12199.922596 eV Total energy + Delta-G solvation = -2729.305298 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.047 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.23573 -38.10602 -35.88500 -34.77591 -34.38449 -32.52227 -29.13919 -27.24728 -24.77002 -22.89347 -21.41422 -20.74958 -18.95270 -18.68527 -16.62803 -15.92991 -15.58766 -15.52465 -14.79378 -14.46531 -14.20022 -14.07043 -13.42080 -13.17722 -12.73046 -12.66957 -12.15863 -12.05469 -11.92307 -11.18836 -11.03934 -10.93922 -10.81717 -10.38268 -9.69231 -9.52405 -8.95512 -8.45582 -8.27384 -7.91716 -6.28863 -4.36612 0.83165 1.31122 1.98677 2.03842 2.71820 2.73101 3.17057 3.25088 3.27803 3.27946 3.56948 4.13196 4.21967 4.63861 4.95126 5.08196 5.16435 5.65340 5.91121 6.13720 6.26224 6.56300 7.05144 7.24342 7.32812 7.53880 7.56304 7.81125 8.35682 8.56967 8.79395 9.30156 10.81121 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.037401 B = 0.004668 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.466194 B = 5996.773669 C = 6730.096706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.284 3.716 3 C -0.157 4.157 4 C -0.069 4.069 5 C -0.301 4.301 6 S 0.333 5.667 7 C 0.103 3.897 8 N -0.651 5.651 9 C 0.682 3.318 10 O -0.560 6.560 11 N -0.708 5.708 12 C 0.263 3.737 13 C -0.548 4.548 14 H 0.065 0.935 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.144 0.856 22 H 0.168 0.832 23 H 0.412 0.588 24 H 0.393 0.607 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 -12.289 -9.187 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.031 4.031 3 C -0.178 4.178 4 C -0.099 4.099 5 C -0.437 4.437 6 S 0.593 5.407 7 C -0.122 4.122 8 N -0.296 5.296 9 C 0.382 3.618 10 O -0.439 6.439 11 N -0.358 5.358 12 C 0.143 3.857 13 C -0.586 4.586 14 H 0.083 0.917 15 C -0.138 4.138 16 N -0.520 5.520 17 Si 0.733 3.267 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.162 0.838 22 H 0.185 0.815 23 H 0.249 0.751 24 H 0.227 0.773 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.369 -11.454 -8.567 14.308 hybrid contribution -2.467 0.130 0.104 2.473 sum -2.836 -11.324 -8.464 14.419 Atomic orbital electron populations 1.81260 1.11736 1.08767 1.10135 1.24978 0.91737 0.93394 0.93026 1.15929 0.85362 1.03632 1.12878 1.20506 0.91819 0.98188 0.99402 1.26013 1.00047 1.07448 1.10192 1.84696 0.94558 1.20190 1.41243 1.22015 1.02017 0.91982 0.96156 1.42313 1.10749 1.28014 1.48556 1.16257 0.85153 0.80463 0.79946 1.90814 1.12347 1.73923 1.66779 1.45825 1.11455 1.29220 1.49318 1.19210 0.88656 0.86242 0.91576 1.21204 0.93326 1.13028 1.31038 0.91727 1.24927 0.95048 0.97623 0.96232 1.69968 1.07418 1.34143 1.40443 0.86325 0.80017 0.80844 0.79532 1.19624 1.20690 1.20685 0.83835 0.81499 0.75121 0.77338 0.94976 0.94968 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.64 18.54 41.84 0.78 -5.87 15 2 C 0.28 3.80 14.98 -22.47 -0.34 3.46 15 3 C -0.16 -1.91 5.88 -105.91 -0.62 -2.53 15 4 C -0.07 -0.68 10.35 -38.97 -0.40 -1.08 15 5 C -0.30 -2.81 11.10 28.83 0.32 -2.49 15 6 S 0.33 4.17 19.96 -107.50 -2.15 2.02 15 7 C 0.10 1.40 6.98 -14.84 -0.10 1.29 15 8 N -0.65 -9.38 5.37 -16.00 -0.09 -9.46 15 9 C 0.68 12.42 8.53 -86.92 -0.74 11.68 15 10 O -0.56 -11.61 13.77 5.29 0.07 -11.54 15 11 N -0.71 -13.64 5.55 -66.41 -0.37 -14.01 15 12 C 0.26 6.46 5.43 -5.19 -0.03 6.43 15 13 C -0.55 -14.07 9.28 -34.44 -0.32 -14.39 15 14 H 0.06 1.56 7.60 -52.48 -0.40 1.17 15 15 C 0.07 1.75 5.46 -17.82 -0.10 1.65 15 16 N -0.88 -24.83 13.29 55.43 0.74 -24.09 15 17 Si 0.91 20.15 29.54 -169.99 -5.02 15.13 15 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 21 H 0.14 1.09 8.06 -52.49 -0.42 0.67 15 22 H 0.17 1.10 8.06 -52.48 -0.42 0.68 15 23 H 0.41 5.08 8.16 -40.82 -0.33 4.75 15 24 H 0.39 6.49 8.34 -40.82 -0.34 6.15 15 25 H 0.03 0.87 8.14 -51.93 -0.42 0.44 15 26 H 0.03 0.87 8.14 -51.93 -0.42 0.45 15 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 270.11 15.07 4.07 4.07 Total: -1.00 -29.69 270.11 -6.20 -35.88 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -1.90 Total: 3.86 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -2.33 Total: 4.01 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 1.06 Total: -53.43 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.07 Total: -11.54 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -2.15 Total: 2.02 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.69 -6.20 -35.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673282789.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.861 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds