Wall clock time and date at job start Sun Mar 29 2020 22:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47142 * 239.99611 * 3 2 1 5 5 H 1.48493 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46740 * 119.99980 * 3 2 1 7 7 C 1.37877 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47271 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.47166 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54212 * 68.38080 * 11 10 9 13 13 O 1.42101 * 110.54799 * 291.62985 * 11 10 9 14 14 N 1.65604 * 104.45132 * 180.02562 * 11 10 9 15 15 C 1.47425 * 125.64416 * 269.94981 * 14 11 10 16 16 C 1.54918 * 104.82827 * 204.16824 * 15 14 11 17 17 C 1.55157 * 101.58155 * 322.99497 * 16 15 14 18 18 H 1.08996 * 110.71539 * 153.86247 * 17 16 15 19 19 F 1.39894 * 110.71872 * 277.13513 * 17 16 15 20 20 C 1.47015 * 125.64701 * 89.99908 * 14 11 10 21 21 H 0.97002 * 120.00071 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.46680 * 60.00211 * 9 7 2 23 23 H 1.08998 * 109.47561 * 300.00874 * 9 7 2 24 24 H 1.09005 * 109.47108 * 60.00459 * 10 9 7 25 25 H 1.08995 * 109.47320 * 300.00137 * 10 9 7 26 26 H 1.08999 * 110.36633 * 85.34098 * 15 14 11 27 27 H 1.08996 * 110.37033 * 323.00478 * 15 14 11 28 28 H 1.09001 * 111.00522 * 204.91555 * 16 15 14 29 29 H 1.09000 * 110.99891 * 81.06585 * 16 15 14 30 30 H 1.09000 * 109.88350 * 59.48033 * 20 14 11 31 31 H 1.08997 * 110.01690 * 298.38549 * 20 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2330 -0.0013 12 8 0.6648 -5.4194 -1.2386 13 8 0.6637 -5.4201 1.2353 14 7 2.5204 -6.3928 -0.0005 15 6 3.1338 -6.9951 -1.1982 16 6 3.6619 -8.3719 -0.7233 17 6 4.1570 -8.0385 0.7089 18 1 4.1324 -8.9257 1.3416 19 9 5.4435 -7.4902 0.6727 20 6 3.1312 -6.9929 1.1946 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.8719 -3.6044 0.8895 25 1 2.8719 -3.6044 -0.8905 26 1 3.9568 -6.3758 -1.5551 27 1 2.3877 -7.1248 -1.9821 28 1 4.4848 -8.7127 -1.3518 29 1 2.8603 -9.1100 -0.6977 30 1 2.3647 -7.4783 1.7986 31 1 3.6345 -6.2249 1.7819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663442396.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:25 Heat of formation + Delta-G solvation = -155.234064 kcal Electronic energy + Delta-G solvation = -16862.650098 eV Core-core repulsion = 13798.214613 eV Total energy + Delta-G solvation = -3064.435485 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.57744 -38.85710 -38.24155 -37.07662 -35.92552 -33.15938 -31.57502 -29.91029 -27.61757 -24.06896 -23.24828 -22.22313 -20.03093 -19.22624 -18.41801 -17.91794 -17.12380 -16.93697 -16.57873 -16.18196 -15.88729 -15.28764 -15.18591 -14.58362 -14.47810 -13.87185 -13.75597 -13.66788 -13.28097 -13.20169 -12.93449 -12.83873 -12.68918 -12.38698 -12.26868 -12.18893 -11.87758 -11.75802 -11.67716 -11.20261 -10.66273 -10.01131 -8.28318 -6.42950 -0.80167 1.39386 1.42973 1.51336 1.67785 2.36489 2.78482 2.97550 3.04888 3.29448 3.48149 3.76572 3.97240 3.98307 4.09628 4.28564 4.39819 4.53315 4.70017 4.73598 4.87380 4.95218 5.01318 5.20256 5.23118 5.25315 5.38665 5.65252 6.03464 6.70006 7.27368 8.83772 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.034098 B = 0.005618 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.963928 B = 4983.085843 C = 5400.940065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.021 3.979 10 C -0.590 4.590 11 S 2.637 3.363 12 O -0.988 6.988 13 O -0.989 6.989 14 N -1.015 6.015 15 C 0.096 3.904 16 C -0.143 4.143 17 C 0.083 3.917 18 H 0.142 0.858 19 F -0.218 7.218 20 C 0.080 3.920 21 H 0.268 0.732 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.137 0.863 25 H 0.138 0.862 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.647 -17.483 0.125 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.091 0.909 9 C -0.018 4.018 10 C -0.721 4.721 11 S 2.735 3.265 12 O -0.979 6.979 13 O -0.980 6.980 14 N -0.855 5.855 15 C -0.028 4.028 16 C -0.182 4.182 17 C 0.046 3.954 18 H 0.160 0.840 19 F -0.199 7.199 20 C -0.046 4.046 21 H 0.077 0.923 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.155 0.845 25 H 0.156 0.844 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.517 -17.499 0.126 19.920 hybrid contribution 0.508 1.571 0.010 1.652 sum 10.026 -15.928 0.136 18.821 Atomic orbital electron populations 1.70092 1.08053 1.28491 1.50642 1.26118 0.95879 1.03873 0.94213 0.85348 0.78151 0.77225 0.79438 1.18798 1.20723 1.18829 1.21478 0.93907 0.90885 1.51942 0.90856 1.18826 0.93565 0.92991 0.96447 1.30404 1.12851 1.16966 1.11917 1.04059 0.74043 0.75659 0.72707 1.93490 1.72230 1.85619 1.46551 1.93489 1.72300 1.85593 1.46589 1.58525 1.57949 1.54881 1.14123 1.22396 0.98171 0.95113 0.87133 1.23426 1.03347 0.96311 0.95091 1.22746 0.76754 0.96111 0.99786 0.84011 1.92824 1.41308 1.88059 1.97672 1.22635 0.97061 0.97527 0.87344 0.92282 0.97371 0.97397 0.84482 0.84415 0.90424 0.89642 0.86641 0.87113 0.88474 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.98 43.68 29.54 68.60 2.03 45.71 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 8 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.02 1.10 4.98 29.85 0.15 1.25 16 10 C -0.59 -23.16 6.12 71.98 0.44 -22.72 16 11 S 2.64 96.34 5.65 -56.49 -0.32 96.02 16 12 O -0.99 -41.50 17.28 -127.65 -2.21 -43.71 16 13 O -0.99 -41.48 17.60 -127.65 -2.25 -43.73 16 14 N -1.02 -26.47 3.62 -506.43 -1.83 -28.30 16 15 C 0.10 1.96 7.07 86.86 0.61 2.57 16 16 C -0.14 -1.81 6.89 31.99 0.22 -1.59 16 17 C 0.08 1.18 4.76 31.78 0.15 1.33 16 18 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 19 F -0.22 -4.22 17.19 44.97 0.77 -3.44 16 20 C 0.08 1.62 6.71 86.73 0.58 2.20 16 21 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 22 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 23 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.14 4.82 8.14 -2.39 -0.02 4.80 16 25 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 1.82 7.67 -2.39 -0.02 1.80 16 28 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.08 1.61 8.11 -2.39 -0.02 1.60 16 Total: -1.00 -76.04 281.68 0.45 -75.60 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.12 Total: 5.90 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 2.85 Total: -47.08 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -1.55 Total: -85.26 kcal Atomic # 8 Polarization: -82.98 SS G_CDS: -4.45 Total: -87.44 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.77 Total: -3.44 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 96.34 SS G_CDS: -0.32 Total: 96.02 kcal Total: -76.04 0.45 -75.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663442396.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.637 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds