Wall clock time and date at job start Sun Mar 29 2020 22:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48497 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47087 * 300.00102 * 3 2 1 6 6 H 1.48503 * 109.46948 * 59.99719 * 3 2 1 7 7 C 1.37879 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99882 * 172.23659 * 7 2 1 9 9 C 1.50700 * 120.00026 * 352.23228 * 7 2 1 10 10 C 1.52997 * 115.54884 * 84.78402 * 9 7 2 11 11 S 1.81403 * 109.47124 * 65.19552 * 10 9 7 12 12 O 1.42110 * 110.53991 * 62.18194 * 11 10 9 13 13 O 1.42098 * 110.54464 * 285.43540 * 11 10 9 14 14 N 1.65599 * 104.45003 * 173.80420 * 11 10 9 15 15 C 1.46495 * 119.99648 * 64.72875 * 14 11 10 16 16 C 1.52998 * 109.47455 * 165.27299 * 15 14 11 17 17 F 1.39895 * 109.47806 * 179.97438 * 16 15 14 18 18 C 1.53003 * 117.49710 * 230.45523 * 9 7 2 19 19 C 1.53002 * 117.49801 * 299.11434 * 9 7 2 20 20 H 0.97003 * 120.00122 * 5.02187 * 1 2 3 21 21 H 1.08997 * 109.47464 * 305.19284 * 10 9 7 22 22 H 1.09005 * 109.46774 * 185.19041 * 10 9 7 23 23 H 0.97002 * 120.00154 * 244.99975 * 14 11 10 24 24 H 1.09006 * 109.47414 * 285.27365 * 15 14 11 25 25 H 1.08995 * 109.47885 * 45.27127 * 15 14 11 26 26 H 1.08998 * 109.47188 * 299.99847 * 16 15 14 27 27 H 1.09006 * 109.46957 * 59.99565 * 16 15 14 28 28 H 1.08997 * 117.49767 * 214.99745 * 18 9 7 29 29 H 1.08999 * 117.49842 * 0.02562 * 18 9 7 30 30 H 1.09001 * 117.49716 * 359.97438 * 19 9 7 31 31 H 1.09001 * 117.49794 * 144.97452 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0772 -1.1983 -0.1269 9 6 1.2614 -2.4933 0.1753 10 6 0.6670 -3.0914 -1.1013 11 16 2.0072 -3.5623 -2.2295 12 8 2.8269 -4.5624 -1.6401 13 8 2.5780 -2.4100 -2.8342 14 7 1.2439 -4.3418 -3.4753 15 6 0.3133 -3.6089 -4.3372 16 6 0.0350 -4.4273 -5.5996 17 9 -0.8541 -3.7278 -6.4225 18 6 1.7805 -3.4660 1.2361 19 6 0.4826 -2.6910 1.4773 20 1 -0.4850 0.8368 -0.0735 21 1 0.0275 -2.3530 -1.5850 22 1 0.0777 -3.9731 -0.8492 23 1 1.4100 -5.2846 -3.6319 24 1 -0.6206 -3.4384 -3.8016 25 1 0.7528 -2.6509 -4.6150 26 1 0.9689 -4.5978 -6.1353 27 1 -0.4046 -5.3854 -5.3219 28 1 1.6984 -4.5321 1.0245 29 1 2.6592 -3.1661 1.8071 30 1 0.5081 -1.8816 2.2069 31 1 -0.4535 -3.2469 1.4244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663702906.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:05 Heat of formation + Delta-G solvation = -107.128899 kcal Electronic energy + Delta-G solvation = -17111.809638 eV Core-core repulsion = 14049.460149 eV Total energy + Delta-G solvation = -3062.349488 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.74900 -36.78749 -36.34923 -35.56251 -35.08159 -32.06325 -28.85488 -28.20582 -25.47687 -22.98235 -21.24048 -19.79288 -18.77323 -17.13285 -16.71410 -16.51587 -16.17861 -15.31309 -15.11452 -14.78838 -14.55437 -14.03925 -13.70520 -13.48198 -13.12887 -11.98804 -11.86507 -11.84086 -11.36147 -11.24268 -11.11602 -11.04763 -10.98833 -10.96110 -10.59720 -10.48093 -10.15205 -9.76281 -9.34652 -8.97847 -8.59365 -8.12733 -6.16199 -4.26798 0.99175 3.27641 3.32447 3.35888 3.42790 4.35657 4.36576 4.53627 4.66072 4.82074 4.96383 5.11530 5.16117 5.20675 5.43465 5.60322 5.73811 5.93115 6.06638 6.22996 6.33997 6.57918 6.69557 6.95472 7.10049 7.22240 7.36683 7.78742 8.17788 8.79259 9.44691 10.91464 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.021963 B = 0.007995 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.594158 B = 3501.318852 C = 4026.387350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.081 3.919 3 Si 0.893 3.107 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.069 0.931 9 C 0.042 3.958 10 C -0.553 4.553 11 S 2.608 3.392 12 O -0.971 6.971 13 O -0.948 6.948 14 N -1.133 6.133 15 C 0.084 3.916 16 C 0.059 3.941 17 F -0.212 7.212 18 C -0.208 4.208 19 C -0.141 4.141 20 H 0.263 0.737 21 H 0.134 0.866 22 H 0.100 0.900 23 H 0.410 0.590 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 -8.645 -6.902 11.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.124 4.124 3 Si 0.720 3.280 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.039 3.961 10 C -0.686 4.686 11 S 2.705 3.295 12 O -0.962 6.962 13 O -0.937 6.937 14 N -0.890 5.890 15 C -0.044 4.044 16 C 0.003 3.997 17 F -0.193 7.193 18 C -0.245 4.245 19 C -0.180 4.180 20 H 0.073 0.927 21 H 0.152 0.848 22 H 0.118 0.882 23 H 0.242 0.758 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.535 -8.155 -6.825 10.745 hybrid contribution -0.480 0.520 0.015 0.708 sum -2.016 -7.635 -6.810 10.428 Atomic orbital electron populations 1.69983 1.06044 1.27146 1.47792 1.24966 0.94826 0.99289 0.93304 0.86502 0.80733 0.83110 0.77657 1.19220 1.20613 1.20844 1.20572 0.93755 0.88555 1.52448 0.91250 1.18295 0.99068 0.94398 0.84301 1.29971 1.16427 1.08552 1.13671 1.05175 0.76428 0.73707 0.74164 1.93514 1.65379 1.59488 1.77806 1.93540 1.74862 1.50823 1.74521 1.55924 1.62039 1.22524 1.48472 1.21766 0.94422 0.96736 0.91427 1.22091 0.92818 0.94778 0.90002 1.92780 1.70944 1.81599 1.74016 1.23202 0.98692 0.96020 1.06594 1.22559 0.92576 1.01047 1.01848 0.92741 0.84791 0.88162 0.75792 0.90560 0.88887 0.90036 0.90244 0.90659 0.89490 0.89558 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.80 12.98 55.43 0.72 -23.08 16 2 C 0.08 2.20 5.38 -17.82 -0.10 2.10 16 3 Si 0.89 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -13.97 8.18 -34.44 -0.28 -14.25 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 C 0.04 1.00 1.32 -155.66 -0.21 0.79 16 10 C -0.55 -11.21 5.92 37.16 0.22 -10.99 16 11 S 2.61 50.44 5.19 -107.50 -0.56 49.88 16 12 O -0.97 -20.49 18.08 -57.54 -1.04 -21.53 16 13 O -0.95 -21.97 17.18 -57.54 -0.99 -22.95 16 14 N -1.13 -15.43 5.89 -10.62 -0.06 -15.49 16 15 C 0.08 1.05 6.58 -4.05 -0.03 1.02 16 16 C 0.06 0.58 7.69 37.16 0.29 0.87 16 17 F -0.21 -2.58 17.36 2.25 0.04 -2.54 16 18 C -0.21 -4.49 9.96 -26.69 -0.27 -4.75 16 19 C -0.14 -3.17 9.49 -26.69 -0.25 -3.42 16 20 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 21 H 0.13 2.82 8.14 -51.93 -0.42 2.39 16 22 H 0.10 1.69 8.09 -51.92 -0.42 1.27 16 23 H 0.41 4.37 8.62 -34.47 -0.30 4.07 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.09 1.30 7.71 -51.93 -0.40 0.90 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 30 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -32.36 287.77 -7.24 -39.60 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.05 Total: 4.14 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -0.62 Total: -28.63 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.66 Total: -38.58 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -2.03 Total: -44.48 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 50.44 SS G_CDS: -0.56 Total: 49.88 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.36 -7.24 -39.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663702906.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.527 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds