Wall clock time and date at job start Sun Mar 29 2020 22:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48497 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47087 * 300.00102 * 3 2 1 6 6 H 1.48503 * 109.46948 * 59.99719 * 3 2 1 7 7 C 1.37879 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99882 * 172.23659 * 7 2 1 9 9 C 1.50700 * 120.00026 * 352.23228 * 7 2 1 10 10 C 1.52997 * 115.54884 * 84.78402 * 9 7 2 11 11 S 1.81403 * 109.47124 * 65.19552 * 10 9 7 12 12 O 1.42110 * 110.53991 * 62.18194 * 11 10 9 13 13 O 1.42098 * 110.54464 * 285.43540 * 11 10 9 14 14 N 1.65599 * 104.45003 * 173.80420 * 11 10 9 15 15 C 1.46495 * 119.99648 * 64.72875 * 14 11 10 16 16 C 1.52998 * 109.47455 * 165.27299 * 15 14 11 17 17 F 1.39895 * 109.47806 * 179.97438 * 16 15 14 18 18 C 1.53003 * 117.49710 * 230.45523 * 9 7 2 19 19 C 1.53002 * 117.49801 * 299.11434 * 9 7 2 20 20 H 0.97003 * 120.00122 * 5.02187 * 1 2 3 21 21 H 1.08997 * 109.47464 * 305.19284 * 10 9 7 22 22 H 1.09005 * 109.46774 * 185.19041 * 10 9 7 23 23 H 0.97002 * 120.00154 * 244.99975 * 14 11 10 24 24 H 1.09006 * 109.47414 * 285.27365 * 15 14 11 25 25 H 1.08995 * 109.47885 * 45.27127 * 15 14 11 26 26 H 1.08998 * 109.47188 * 299.99847 * 16 15 14 27 27 H 1.09006 * 109.46957 * 59.99565 * 16 15 14 28 28 H 1.08997 * 117.49767 * 214.99745 * 18 9 7 29 29 H 1.08999 * 117.49842 * 0.02562 * 18 9 7 30 30 H 1.09001 * 117.49716 * 359.97438 * 19 9 7 31 31 H 1.09001 * 117.49794 * 144.97452 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0772 -1.1983 -0.1269 9 6 1.2614 -2.4933 0.1753 10 6 0.6670 -3.0914 -1.1013 11 16 2.0072 -3.5623 -2.2295 12 8 2.8269 -4.5624 -1.6401 13 8 2.5780 -2.4100 -2.8342 14 7 1.2439 -4.3418 -3.4753 15 6 0.3133 -3.6089 -4.3372 16 6 0.0350 -4.4273 -5.5996 17 9 -0.8541 -3.7278 -6.4225 18 6 1.7805 -3.4660 1.2361 19 6 0.4826 -2.6910 1.4773 20 1 -0.4850 0.8368 -0.0735 21 1 0.0275 -2.3530 -1.5850 22 1 0.0777 -3.9731 -0.8492 23 1 1.4100 -5.2846 -3.6319 24 1 -0.6206 -3.4384 -3.8016 25 1 0.7528 -2.6509 -4.6150 26 1 0.9689 -4.5978 -6.1353 27 1 -0.4046 -5.3854 -5.3219 28 1 1.6984 -4.5321 1.0245 29 1 2.6592 -3.1661 1.8071 30 1 0.5081 -1.8816 2.2069 31 1 -0.4535 -3.2469 1.4244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663702906.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:04 Heat of formation + Delta-G solvation = -130.932173 kcal Electronic energy + Delta-G solvation = -17112.841825 eV Core-core repulsion = 14049.460149 eV Total energy + Delta-G solvation = -3063.381676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.61380 -38.56103 -37.97610 -36.87887 -36.55154 -34.08559 -29.90302 -29.78349 -27.48731 -23.91462 -22.98376 -21.53902 -20.31081 -18.56081 -18.36827 -17.66046 -17.24918 -16.72192 -16.70298 -16.38761 -15.98501 -15.55621 -14.97294 -14.90341 -14.50048 -13.75944 -13.65247 -13.21098 -13.13024 -12.91211 -12.88627 -12.85712 -12.44194 -12.22183 -12.06704 -11.96594 -11.85162 -11.52921 -10.87359 -10.58595 -10.53451 -9.87473 -8.20008 -6.34231 -0.53685 1.36583 1.40383 1.51083 1.97544 2.39312 2.92339 3.07327 3.38413 3.41484 3.62677 3.89525 3.93212 4.11474 4.29387 4.36155 4.48249 4.54720 4.61171 4.69543 4.85316 4.99130 5.10619 5.22504 5.47960 5.59880 5.71991 6.13580 6.22725 6.72352 7.38169 8.86989 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.021963 B = 0.007995 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.594158 B = 3501.318852 C = 4026.387350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.042 3.958 3 Si 0.936 3.064 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.008 3.992 10 C -0.553 4.553 11 S 2.628 3.372 12 O -0.990 6.990 13 O -0.993 6.993 14 N -1.111 6.111 15 C 0.074 3.926 16 C 0.062 3.938 17 F -0.226 7.226 18 C -0.195 4.195 19 C -0.140 4.140 20 H 0.265 0.735 21 H 0.123 0.877 22 H 0.137 0.863 23 H 0.427 0.573 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 -10.085 -7.450 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.161 4.161 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.006 3.994 10 C -0.685 4.685 11 S 2.725 3.275 12 O -0.980 6.980 13 O -0.983 6.983 14 N -0.873 5.873 15 C -0.053 4.053 16 C 0.006 3.994 17 F -0.207 7.207 18 C -0.232 4.232 19 C -0.179 4.179 20 H 0.074 0.926 21 H 0.141 0.859 22 H 0.155 0.845 23 H 0.264 0.736 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.115 0.885 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.233 -9.608 -7.362 12.309 hybrid contribution -0.262 0.921 0.168 0.972 sum -2.495 -8.688 -7.194 11.552 Atomic orbital electron populations 1.70021 1.06567 1.27716 1.48459 1.25521 0.95635 1.01560 0.93413 0.85844 0.79466 0.80535 0.78040 1.19747 1.20246 1.19769 1.20749 0.93183 0.90666 1.52518 0.93290 1.18433 1.00374 0.94333 0.86272 1.29869 1.16792 1.09626 1.12254 1.04253 0.76091 0.72834 0.74339 1.93478 1.66332 1.59581 1.78657 1.93487 1.76170 1.53118 1.75510 1.55254 1.61799 1.23315 1.46917 1.21957 0.94141 0.96440 0.92810 1.22209 0.93668 0.95064 0.88481 1.92755 1.71506 1.82150 1.74293 1.23253 0.98042 0.97019 1.04918 1.22519 0.93952 1.00872 1.00543 0.92561 0.85866 0.84458 0.73590 0.89498 0.90958 0.88512 0.86918 0.88038 0.90009 0.91698 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.62 12.98 21.45 0.28 -48.35 16 2 C 0.04 2.27 5.38 84.65 0.46 2.72 16 3 Si 0.94 43.92 29.55 68.60 2.03 45.95 16 4 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.53 -29.25 8.18 25.60 0.21 -29.04 16 8 H 0.05 2.80 7.83 -2.91 -0.02 2.78 16 9 C 0.01 0.38 1.32 -52.93 -0.07 0.31 16 10 C -0.55 -21.60 5.92 71.98 0.43 -21.17 16 11 S 2.63 98.85 5.19 -56.49 -0.29 98.56 16 12 O -0.99 -40.27 18.08 -127.65 -2.31 -42.58 16 13 O -0.99 -46.43 17.18 -127.65 -2.19 -48.62 16 14 N -1.11 -27.68 5.89 -187.50 -1.10 -28.78 16 15 C 0.07 1.70 6.58 86.38 0.57 2.27 16 16 C 0.06 1.02 7.69 71.98 0.55 1.57 16 17 F -0.23 -5.02 17.36 44.97 0.78 -4.24 16 18 C -0.20 -8.14 9.96 30.62 0.30 -7.84 16 19 C -0.14 -6.12 9.49 30.62 0.29 -5.83 16 20 H 0.27 13.75 8.32 -92.71 -0.77 12.97 16 21 H 0.12 5.10 8.14 -2.39 -0.02 5.08 16 22 H 0.14 4.20 8.09 -2.39 -0.02 4.19 16 23 H 0.43 7.71 8.62 -96.74 -0.83 6.88 16 24 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.07 1.99 7.71 -2.39 -0.02 1.97 16 26 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 29 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -69.36 287.77 0.23 -69.14 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.30 Total: 15.93 kcal Atomic # 6 Polarization: -59.74 SS G_CDS: 2.74 Total: -57.00 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -0.83 Total: -77.13 kcal Atomic # 8 Polarization: -86.70 SS G_CDS: -4.50 Total: -91.20 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.78 Total: -4.24 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 98.85 SS G_CDS: -0.29 Total: 98.56 kcal Total: -69.36 0.23 -69.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663702906.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.796 kcal (2) G-P(sol) polarization free energy of solvation -69.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds