Wall clock time and date at job start Sun Mar 29 2020 23:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00278 * 2 1 4 4 H 1.48501 * 109.46936 * 239.99491 * 3 2 1 5 5 H 1.48495 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47464 * 119.99614 * 3 2 1 7 7 C 1.37884 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99542 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46840 * 179.97438 * 9 7 2 11 11 C 1.38342 * 124.85582 * 90.00090 * 10 9 7 12 12 C 1.39172 * 132.32724 * 359.97438 * 11 10 9 13 13 C 1.37804 * 120.04728 * 180.02562 * 12 11 10 14 14 C 1.38665 * 120.57320 * 0.02562 * 13 12 11 15 15 C 1.37806 * 120.23746 * 359.97134 * 14 13 12 16 16 C 1.39294 * 119.78017 * 0.02991 * 15 14 13 17 17 C 1.47450 * 133.45176 * 179.97438 * 16 15 14 18 18 C 1.39293 * 133.46183 * 0.04736 * 17 16 15 19 19 C 1.37800 * 119.78977 * 180.02562 * 18 17 16 20 20 C 1.38662 * 120.23276 * 359.96890 * 19 18 17 21 21 C 1.37801 * 120.57890 * 359.97438 * 20 19 18 22 22 C 1.38342 * 124.86417 * 269.97842 * 10 9 7 23 23 H 0.97000 * 119.99388 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47204 * 60.00208 * 9 7 2 25 25 H 1.08993 * 109.47386 * 299.99395 * 9 7 2 26 26 H 1.08002 * 119.97580 * 0.02562 * 12 11 10 27 27 H 1.07998 * 119.71420 * 179.97438 * 13 12 11 28 28 H 1.08008 * 119.88007 * 179.70447 * 14 13 12 29 29 H 1.07995 * 120.10684 * 180.02562 * 15 14 13 30 30 H 1.08003 * 120.10547 * 359.95501 * 18 17 16 31 31 H 1.08000 * 119.88794 * 180.02562 * 19 18 17 32 32 H 1.08005 * 119.71199 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.98129 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.7166 -4.2138 1.1358 12 6 2.5163 -3.9788 2.4928 13 6 3.1729 -4.7463 3.4302 14 6 4.0369 -5.7563 3.0349 15 6 4.2483 -6.0042 1.6959 16 6 3.5910 -5.2359 0.7379 17 6 3.5910 -5.2360 -0.7366 18 6 4.2475 -6.0049 -1.6947 19 6 4.0364 -5.7569 -3.0337 20 6 3.1732 -4.7463 -3.4290 21 6 2.5164 -3.9789 -2.4917 22 6 2.7164 -4.2141 -1.1346 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8903 26 1 1.8458 -3.1944 2.8114 27 1 3.0139 -4.5591 4.4819 28 1 4.5494 -6.3479 3.7792 29 1 4.9213 -6.7916 1.3905 30 1 4.9208 -6.7921 -1.3891 31 1 4.5444 -6.3524 -3.7779 32 1 3.0137 -4.5595 -4.4807 33 1 1.8465 -3.1940 -2.8104 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001555498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:23 Heat of formation + Delta-G solvation = 61.008329 kcal Electronic energy + Delta-G solvation = -17333.187996 eV Core-core repulsion = 14709.287853 eV Total energy + Delta-G solvation = -2623.900143 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87075 -37.57089 -35.79452 -33.24090 -31.77683 -30.17686 -29.35008 -28.27255 -26.68644 -23.84862 -22.54570 -21.71029 -20.29237 -20.23771 -16.92074 -16.75556 -16.56176 -15.72163 -14.61360 -14.43263 -14.33380 -14.11466 -13.56431 -13.32120 -13.14582 -12.82672 -12.45046 -11.83222 -11.72610 -11.44913 -11.36612 -11.16850 -10.81094 -10.61444 -10.50898 -10.46397 -10.10628 -9.53313 -9.18779 -8.67599 -8.48895 -7.46539 -6.81094 -6.24876 -4.36679 1.28545 1.64045 2.42661 2.44157 3.20745 3.24723 3.28266 3.64305 4.23489 4.32233 4.47466 5.03431 5.05468 5.11838 5.38573 5.38844 5.42476 5.64412 5.79631 5.80815 5.88788 6.11206 6.17779 6.26559 6.48265 6.54556 6.62020 6.77395 6.91415 6.94996 6.99615 7.00229 7.20815 7.33036 7.39108 7.64343 7.87584 7.99901 8.08669 8.70610 9.30830 10.78846 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.008431 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.698791 B = 3320.284730 C = 4528.108854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.241 3.759 10 N -0.477 5.477 11 C 0.158 3.842 12 C -0.131 4.131 13 C -0.095 4.095 14 C -0.168 4.168 15 C -0.067 4.067 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.067 4.067 19 C -0.168 4.168 20 C -0.095 4.095 21 C -0.131 4.131 22 C 0.158 3.842 23 H 0.268 0.732 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -10.203 0.001 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.123 3.877 10 N -0.159 5.159 11 C 0.051 3.949 12 C -0.152 4.152 13 C -0.114 4.114 14 C -0.187 4.187 15 C -0.085 4.085 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.085 4.085 19 C -0.187 4.187 20 C -0.114 4.114 21 C -0.152 4.152 22 C 0.051 3.949 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.143 0.857 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.470 -9.785 0.001 11.210 hybrid contribution 0.318 1.171 -0.001 1.213 sum 5.788 -8.614 0.001 10.378 Atomic orbital electron populations 1.69915 1.06049 1.27742 1.49194 1.24939 0.94937 0.99447 0.94386 0.86456 0.79508 0.81986 0.79029 1.19925 1.20923 1.19921 1.21346 0.93689 0.89942 1.52895 0.91889 1.19620 0.86927 0.81825 0.99341 1.44879 1.39411 1.30111 1.01548 1.18324 0.94897 0.93100 0.88612 1.20228 1.03484 1.02110 0.89394 1.20745 0.96720 0.95450 0.98493 1.20710 1.02225 1.00651 0.95132 1.20338 0.98229 0.98090 0.91864 1.18762 1.02299 0.99812 0.91580 1.18761 1.02298 0.99814 0.91582 1.20337 0.98235 0.98085 0.91864 1.20706 1.02267 1.00611 0.95131 1.20745 0.96697 0.95474 0.98495 1.20229 1.03478 1.02114 0.89393 1.18327 0.94893 0.93103 0.88611 0.92224 0.93730 0.93721 0.85683 0.86164 0.86523 0.86653 0.86654 0.86522 0.86166 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.81 9.39 -34.44 -0.32 -15.13 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.24 6.11 5.65 -5.19 -0.03 6.08 16 10 N -0.48 -11.03 2.81 -112.80 -0.32 -11.34 16 11 C 0.16 3.38 6.77 -83.82 -0.57 2.81 16 12 C -0.13 -2.52 9.86 -39.39 -0.39 -2.91 16 13 C -0.09 -1.50 10.01 -39.58 -0.40 -1.89 16 14 C -0.17 -2.48 10.03 -39.58 -0.40 -2.88 16 15 C -0.07 -1.08 10.09 -39.35 -0.40 -1.47 16 16 C -0.12 -2.34 6.35 -104.99 -0.67 -3.01 16 17 C -0.12 -2.34 6.35 -104.99 -0.67 -3.01 16 18 C -0.07 -1.08 10.09 -39.35 -0.40 -1.47 16 19 C -0.17 -2.48 10.03 -39.58 -0.40 -2.88 16 20 C -0.09 -1.50 10.01 -39.58 -0.40 -1.89 16 21 C -0.13 -2.52 9.85 -39.39 -0.39 -2.91 16 22 C 0.16 3.38 6.77 -83.81 -0.57 2.81 16 23 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.04 1.17 7.91 -51.93 -0.41 0.76 16 25 H 0.04 1.17 7.91 -51.93 -0.41 0.76 16 26 H 0.13 2.42 7.92 -52.49 -0.42 2.01 16 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.13 2.42 7.92 -52.49 -0.42 2.01 16 LS Contribution 289.78 15.07 4.37 4.37 Total: -1.00 -29.21 289.78 -10.04 -39.26 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.74 Total: 1.96 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -6.07 Total: -26.04 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.42 Total: -35.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.21 -10.04 -39.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001555498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.264 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds