Wall clock time and date at job start Sun Mar 29 2020 23:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99893 * 2 1 4 4 H 1.48498 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46902 * 299.99781 * 3 2 1 6 6 H 1.48493 * 109.47046 * 59.99942 * 3 2 1 7 7 C 1.37873 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00319 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47588 * 179.07945 * 9 7 2 11 11 C 1.46899 * 110.99815 * 288.88685 * 10 9 7 12 12 C 1.50700 * 109.47168 * 169.99950 * 11 10 9 13 13 C 1.33390 * 125.20775 * 89.99026 * 12 11 10 14 14 C 1.38415 * 114.92260 * 179.97438 * 13 12 11 15 15 C 1.33386 * 114.92145 * 0.02562 * 14 13 12 16 16 S 1.75886 * 109.59534 * 359.75724 * 15 14 13 17 17 C 1.46893 * 111.00267 * 164.92809 * 10 9 7 18 18 C 1.53001 * 109.47001 * 288.72279 * 17 10 9 19 19 C 1.53003 * 117.50359 * 116.45794 * 18 17 10 20 20 C 1.53001 * 117.50162 * 185.11964 * 18 17 10 21 21 H 0.97001 * 119.99983 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47093 * 59.08281 * 9 7 2 23 23 H 1.08997 * 109.46944 * 299.07881 * 9 7 2 24 24 H 1.08999 * 109.46622 * 289.99270 * 11 10 9 25 25 H 1.08994 * 109.47695 * 49.99391 * 11 10 9 26 26 H 1.08004 * 122.53350 * 359.96446 * 13 12 11 27 27 H 1.08008 * 122.53613 * 180.02562 * 14 13 12 28 28 H 1.08009 * 125.20058 * 180.02562 * 15 14 13 29 29 H 1.08995 * 109.47087 * 168.72407 * 17 10 9 30 30 H 1.08999 * 109.46888 * 48.71700 * 17 10 9 31 31 H 1.09004 * 115.54996 * 330.78356 * 18 17 10 32 32 H 1.08995 * 117.49806 * 215.00220 * 19 18 17 33 33 H 1.09002 * 117.49143 * 0.02562 * 19 18 17 34 34 H 1.09008 * 117.49328 * 359.96979 * 20 18 17 35 35 H 1.08990 * 117.50326 * 144.99303 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2055 -3.6157 -0.0211 11 6 2.8674 -3.7171 -1.3286 12 6 4.0040 -4.7028 -1.2411 13 6 3.9065 -6.0120 -1.4767 14 6 5.0874 -6.7199 -1.3347 15 6 6.1440 -5.9855 -0.9832 16 16 5.6637 -4.3015 -0.8191 17 6 1.5460 -4.8791 0.3346 18 6 1.2028 -4.8731 1.8256 19 6 -0.2770 -4.9289 2.2103 20 6 0.6156 -6.1545 2.4206 21 1 -0.4850 0.8401 -0.0004 22 1 0.6125 -2.5500 -0.8814 23 1 0.6366 -2.5639 0.8984 24 1 2.1486 -4.0568 -2.0742 25 1 3.2551 -2.7400 -1.6165 26 1 2.9763 -6.4841 -1.7570 27 1 5.1487 -7.7860 -1.4962 28 1 7.1428 -6.3661 -0.8277 29 1 2.2156 -5.7117 0.1193 30 1 0.6314 -4.9881 -0.2483 31 1 1.8653 -4.2822 2.4581 32 1 -0.5881 -4.3746 3.0957 33 1 -1.0061 -4.9703 1.4010 34 1 0.4733 -7.0017 1.7496 35 1 0.8916 -6.4066 3.4444 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:03 Heat of formation + Delta-G solvation = 43.785321 kcal Electronic energy + Delta-G solvation = -16160.624068 eV Core-core repulsion = 13671.421031 eV Total energy + Delta-G solvation = -2489.203037 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.72615 -38.32957 -36.82757 -34.65344 -31.52647 -29.49033 -27.77656 -25.72061 -24.06143 -23.16784 -22.56905 -21.13430 -19.95557 -18.57771 -18.01921 -16.89300 -16.48255 -16.35680 -15.91750 -15.41649 -15.05970 -14.35171 -14.10723 -13.85147 -13.61219 -13.40421 -13.23089 -12.96958 -12.64692 -12.54052 -12.38673 -12.33049 -12.17004 -11.90378 -11.50236 -11.39337 -11.09185 -10.72580 -10.57257 -9.54314 -9.31403 -9.01912 -8.19767 -6.29182 0.17744 0.82790 1.27072 1.38868 1.39832 1.53157 1.91679 2.39828 2.94038 3.12588 3.33722 3.86885 4.02285 4.07022 4.23680 4.30728 4.32217 4.53902 4.60643 4.73765 4.76411 4.78575 4.82816 4.90230 5.03667 5.18974 5.22962 5.27728 5.33311 5.41339 5.46412 5.66957 5.69307 6.08287 6.31908 6.62846 6.86812 7.40259 8.90961 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.007923 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.639146 B = 3533.036766 C = 4952.105861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.213 3.787 10 N -0.534 5.534 11 C 0.132 3.868 12 C -0.169 4.169 13 C -0.143 4.143 14 C -0.135 4.135 15 C -0.215 4.215 16 S 0.080 5.920 17 C 0.086 3.914 18 C -0.155 4.155 19 C -0.191 4.191 20 C -0.149 4.149 21 H 0.264 0.736 22 H -0.040 1.040 23 H 0.016 0.984 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.145 0.855 27 H 0.167 0.833 28 H 0.189 0.811 29 H 0.089 0.911 30 H 0.017 0.983 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.179 -14.354 -0.724 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.087 3.913 10 N -0.258 5.258 11 C 0.003 3.997 12 C -0.287 4.287 13 C -0.175 4.175 14 C -0.165 4.165 15 C -0.350 4.350 16 S 0.343 5.657 17 C -0.042 4.042 18 C -0.174 4.174 19 C -0.228 4.228 20 C -0.186 4.186 21 H 0.073 0.927 22 H -0.022 1.022 23 H 0.034 0.966 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.163 0.837 27 H 0.184 0.816 28 H 0.206 0.794 29 H 0.107 0.893 30 H 0.035 0.965 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.158 -12.802 -0.001 15.741 hybrid contribution -1.471 -0.060 -0.943 1.748 sum 7.687 -12.862 -0.944 15.014 Atomic orbital electron populations 1.70085 1.07570 1.27697 1.51957 1.25829 0.95675 1.02872 0.94943 0.85438 0.79028 0.79043 0.77793 1.18937 1.20325 1.20361 1.21478 0.93407 0.91257 1.49737 0.92426 1.19358 0.89706 0.88302 0.93922 1.62014 1.31927 1.03981 1.27881 1.20293 0.92130 0.96758 0.90568 1.24387 0.97807 0.98312 1.08203 1.20351 1.00624 0.92198 1.04323 1.20353 0.91130 1.02273 1.02768 1.25954 1.04531 0.95148 1.09402 1.84521 1.02671 1.10000 1.68462 1.21707 0.96399 0.92611 0.93439 1.22149 0.96425 1.02469 0.96348 1.23012 0.93494 1.03188 1.03151 1.23031 1.01944 0.91095 1.02567 0.92745 1.02203 0.96613 0.94238 0.91372 0.83744 0.81581 0.79369 0.89252 0.96510 0.89336 0.89278 0.89772 0.87512 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.52 -29.96 8.42 25.60 0.22 -29.74 16 8 H 0.06 3.31 7.56 -2.91 -0.02 3.29 16 9 C 0.21 11.48 4.58 85.56 0.39 11.87 16 10 N -0.53 -23.54 4.41 -905.39 -3.99 -27.53 16 11 C 0.13 5.27 5.31 85.56 0.45 5.72 16 12 C -0.17 -5.56 5.49 24.59 0.13 -5.43 16 13 C -0.14 -3.85 8.39 21.21 0.18 -3.67 16 14 C -0.14 -2.96 10.18 21.21 0.22 -2.74 16 15 C -0.21 -4.79 11.23 66.72 0.75 -4.05 16 16 S 0.08 2.41 23.33 -56.49 -1.32 1.09 16 17 C 0.09 3.18 5.11 86.30 0.44 3.62 16 18 C -0.16 -5.43 4.93 -10.79 -0.05 -5.49 16 19 C -0.19 -6.17 10.08 30.62 0.31 -5.86 16 20 C -0.15 -3.88 10.25 30.62 0.31 -3.57 16 21 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 22 H -0.04 -2.33 8.06 -2.38 -0.02 -2.35 16 23 H 0.02 0.91 7.07 -2.39 -0.02 0.90 16 24 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 25 H 0.07 3.03 7.06 -2.39 -0.02 3.02 16 26 H 0.14 3.47 7.85 -2.91 -0.02 3.44 16 27 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.19 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.09 2.90 5.44 -2.39 -0.01 2.89 16 30 H 0.02 0.63 7.79 -2.39 -0.02 0.62 16 31 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 32 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.08 2.77 8.03 -2.39 -0.02 2.75 16 34 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -64.54 305.29 1.87 -62.67 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.06 Total: 11.61 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 3.81 Total: -38.60 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -3.71 Total: -83.81 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.32 Total: 1.09 kcal Total: -64.54 1.87 -62.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.450 kcal (2) G-P(sol) polarization free energy of solvation -64.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds