Wall clock time and date at job start Sun Mar 29 2020 23:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47388 * 332.73981 * 3 2 1 5 5 C 1.37102 * 119.99884 * 263.87141 * 4 3 2 6 6 H 1.07995 * 119.99932 * 201.24155 * 5 4 3 7 7 C 1.38951 * 119.99795 * 21.24328 * 5 4 3 8 8 N 1.31405 * 120.00276 * 11.10868 * 7 5 4 9 9 Si 1.86799 * 119.99615 * 191.10539 * 7 5 4 10 10 H 1.48502 * 109.47284 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46931 * 120.00136 * 9 7 5 12 12 H 1.48498 * 109.47533 * 240.00183 * 9 7 5 13 13 C 1.34773 * 120.00325 * 83.87027 * 4 3 2 14 14 O 1.21292 * 120.00246 * 185.13356 * 13 4 3 15 15 C 1.50701 * 119.99560 * 5.13125 * 13 4 3 16 16 H 1.09000 * 109.60653 * 327.74642 * 15 13 4 17 17 C 1.53347 * 109.60455 * 88.07749 * 15 13 4 18 18 C 1.53068 * 108.42664 * 187.44870 * 17 15 13 19 19 C 1.50176 * 109.89064 * 311.09617 * 18 17 15 20 20 O 1.21283 * 118.24309 * 197.57910 * 19 18 17 21 21 N 1.33350 * 123.50551 * 17.86541 * 19 18 17 22 22 C 1.45766 * 124.09677 * 357.20135 * 21 19 18 23 23 H 1.09007 * 109.46741 * 212.73860 * 3 2 1 24 24 H 1.09001 * 109.47042 * 92.74575 * 3 2 1 25 25 H 0.97005 * 120.00182 * 179.97438 * 8 7 5 26 26 H 1.08993 * 109.67552 * 67.71052 * 17 15 13 27 27 H 1.09005 * 109.66813 * 307.17894 * 17 15 13 28 28 H 1.08997 * 109.39643 * 190.96754 * 18 17 15 29 29 H 1.09007 * 109.33029 * 71.18391 * 18 17 15 30 30 H 0.97003 * 117.94091 * 177.47490 * 21 19 18 31 31 H 1.08998 * 109.51138 * 259.17638 * 22 21 19 32 32 H 1.09007 * 108.99110 * 139.65315 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2269 0.6326 5 6 3.4450 -1.2229 1.9587 6 1 4.1079 -1.9828 2.3453 7 6 2.9448 -0.2411 2.8053 8 7 1.9763 0.5476 2.3969 9 14 3.6491 -0.0426 4.5240 10 1 4.7229 -1.0459 4.7379 11 1 4.2118 1.3235 4.6735 12 1 2.5730 -0.2472 5.5267 13 6 3.2046 -2.3601 -0.0889 14 8 3.5199 -3.3975 0.4547 15 6 2.9332 -2.3382 -1.5711 16 1 2.1688 -1.5932 -1.7920 17 6 4.2227 -1.9915 -2.3252 18 6 3.8800 -1.7929 -3.8038 19 6 3.0470 -2.9422 -4.2941 20 8 2.9588 -3.1177 -5.4909 21 7 2.3947 -3.7769 -3.4840 22 6 2.4539 -3.7164 -2.0288 23 1 2.9709 0.8653 0.5558 24 1 2.9713 0.0501 -1.0265 25 1 1.6269 1.2327 2.9881 26 1 4.9392 -2.8062 -2.2208 27 1 4.6487 -1.0733 -1.9207 28 1 4.8007 -1.7392 -4.3847 29 1 3.3218 -0.8642 -3.9232 30 1 1.8498 -4.4699 -3.8886 31 1 3.1416 -4.4776 -1.6605 32 1 1.4589 -3.9041 -1.6252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111325148.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:36 Heat of formation + Delta-G solvation = -39.375410 kcal Electronic energy + Delta-G solvation = -18673.069123 eV Core-core repulsion = 15633.966751 eV Total energy + Delta-G solvation = -3039.102371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37767 -38.90185 -36.26450 -35.64894 -34.41389 -33.05756 -31.83695 -29.70522 -27.56416 -25.41013 -24.24143 -22.85257 -20.13652 -18.47157 -17.98194 -17.43600 -16.47768 -16.39028 -15.88584 -15.25773 -14.65598 -14.32043 -14.22479 -13.72810 -13.44355 -13.18647 -13.09401 -12.92978 -12.09942 -11.88884 -11.76187 -11.51387 -11.30695 -11.24849 -11.05346 -10.84998 -10.64682 -10.47603 -10.41836 -9.67470 -9.38011 -9.02280 -8.68814 -8.16163 -6.57989 -4.16435 2.71958 3.00719 3.15500 3.20704 3.30041 3.48435 3.64387 3.91041 4.02465 4.46861 4.69929 4.78496 4.82590 4.94830 5.05518 5.17055 5.43149 5.43691 5.58105 5.71951 5.80245 5.90625 6.00482 6.11678 6.26485 6.50623 6.81572 7.35109 7.39478 7.77264 8.15242 8.27435 8.66277 8.86994 9.05919 9.57357 10.46581 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.033654 B = 0.006505 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.804167 B = 4303.469395 C = 4630.053119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.247 3.753 3 C 0.219 3.781 4 N -0.439 5.439 5 C -0.307 4.307 6 H 0.108 0.892 7 C 0.031 3.969 8 N -0.886 5.886 9 Si 0.934 3.066 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.465 3.535 14 O -0.569 6.569 15 C -0.123 4.123 16 H 0.089 0.911 17 C -0.112 4.112 18 C -0.134 4.134 19 C 0.519 3.481 20 O -0.570 6.570 21 N -0.716 5.716 22 C 0.126 3.874 23 H 0.135 0.865 24 H 0.080 0.920 25 H 0.274 0.726 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.398 0.602 31 H 0.085 0.915 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -0.250 -6.764 8.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.072 4.072 3 C 0.092 3.908 4 N -0.159 5.159 5 C -0.435 4.435 6 H 0.126 0.874 7 C -0.172 4.172 8 N -0.525 5.525 9 Si 0.760 3.240 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.253 3.747 14 O -0.451 6.451 15 C -0.145 4.145 16 H 0.107 0.893 17 C -0.150 4.150 18 C -0.174 4.174 19 C 0.307 3.693 20 O -0.450 6.450 21 N -0.367 5.367 22 C 0.002 3.998 23 H 0.153 0.847 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.233 0.767 31 H 0.104 0.896 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.126 -0.514 -6.871 7.566 hybrid contribution 0.190 0.093 1.021 1.042 sum 3.316 -0.421 -5.850 6.738 Atomic orbital electron populations 1.80914 1.13619 1.08760 1.12111 1.29295 0.95368 0.92428 0.90066 1.18831 0.81569 0.92799 0.97600 1.43576 1.56240 1.06038 1.10041 1.19803 1.26785 1.14056 0.82811 0.87418 1.25355 0.94957 0.96615 1.00278 1.69731 1.23973 1.21051 1.37778 0.85732 0.78881 0.78313 0.81067 1.19104 1.20446 1.20774 1.19696 0.83851 0.83901 0.87292 1.90562 1.52009 1.30254 1.72313 1.21536 0.99243 0.98256 0.95452 0.89268 1.21637 0.96715 1.03821 0.92850 1.21676 1.01010 0.97321 0.97394 1.20240 0.79488 0.83529 0.86050 1.90731 1.64477 1.73777 1.16020 1.45520 1.49562 1.34100 1.07549 1.21227 1.02819 0.97477 0.78285 0.84736 0.90178 0.91497 0.90281 0.89585 0.87904 0.87995 0.76661 0.89649 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.82 18.54 42.15 0.78 -10.04 16 2 C 0.25 5.16 12.84 -20.76 -0.27 4.89 16 3 C 0.22 4.00 4.78 -6.83 -0.03 3.97 16 4 N -0.44 -9.35 2.60 -117.93 -0.31 -9.66 16 5 C -0.31 -7.37 9.29 -14.93 -0.14 -7.51 16 6 H 0.11 2.72 7.43 -52.49 -0.39 2.33 16 7 C 0.03 0.72 5.10 -17.47 -0.09 0.63 16 8 N -0.89 -21.15 9.05 55.50 0.50 -20.65 16 9 Si 0.93 18.84 29.57 -169.99 -5.03 13.82 16 10 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 11 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.47 9.37 6.65 -10.99 -0.07 9.30 16 14 O -0.57 -13.42 15.66 5.55 0.09 -13.33 16 15 C -0.12 -1.85 1.75 -91.63 -0.16 -2.01 16 16 H 0.09 1.31 6.05 -51.93 -0.31 1.00 16 17 C -0.11 -1.37 5.10 -26.52 -0.14 -1.50 16 18 C -0.13 -1.51 6.03 -28.10 -0.17 -1.68 16 19 C 0.52 7.37 7.71 -11.87 -0.09 7.28 16 20 O -0.57 -10.02 17.78 5.55 0.10 -9.92 16 21 N -0.72 -9.30 5.45 -61.38 -0.33 -9.63 16 22 C 0.13 1.78 6.23 -4.48 -0.03 1.75 16 23 H 0.14 2.55 6.37 -51.93 -0.33 2.22 16 24 H 0.08 1.09 5.97 -51.93 -0.31 0.78 16 25 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 26 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 27 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.40 4.62 8.80 -40.82 -0.36 4.26 16 31 H 0.09 1.26 7.50 -51.93 -0.39 0.87 16 32 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 276.02 15.07 4.16 4.16 Total: -1.00 -30.66 276.02 -4.53 -35.20 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.31 Total: 4.94 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -1.18 Total: 15.12 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.64 Total: -49.98 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.19 Total: -23.25 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.66 -4.53 -35.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325148.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.178 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds