Wall clock time and date at job start Sun Mar 29 2020 23:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34656 * 117.00105 * 2 1 4 4 O 1.21519 * 120.00063 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00044 * 180.27545 * 3 2 1 6 6 C 1.40175 * 119.99915 * 175.27062 * 5 3 2 7 7 C 1.38707 * 120.08592 * 34.64322 * 6 5 3 8 8 C 1.38204 * 119.98168 * 180.02562 * 7 6 5 9 9 C 1.38279 * 120.16302 * 359.97438 * 8 7 6 10 10 C 1.38247 * 120.17829 * 0.02562 * 9 8 7 11 11 C 1.38553 * 120.00874 * 359.71855 * 10 9 8 12 12 O 1.35981 * 120.07610 * 180.30234 * 11 10 9 13 13 C 1.42901 * 117.00484 * 0.25318 * 12 11 10 14 14 C 1.50693 * 109.47263 * 180.02562 * 13 12 11 15 15 H 1.08007 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00088 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00028 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47533 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47003 * 119.99635 * 18 16 14 21 21 H 1.48498 * 109.47016 * 239.99218 * 18 16 14 22 22 H 1.08996 * 109.46829 * 300.00091 * 1 2 3 23 23 H 1.09001 * 109.47372 * 59.99520 * 1 2 3 24 24 H 1.08998 * 109.47439 * 179.97438 * 1 2 3 25 25 H 0.96999 * 120.00272 * 355.27760 * 5 3 2 26 26 H 1.07994 * 120.00697 * 359.97438 * 7 6 5 27 27 H 1.08001 * 119.91999 * 179.97438 * 8 7 6 28 28 H 1.07995 * 119.91004 * 179.97438 * 9 8 7 29 29 H 1.07994 * 119.99404 * 180.02562 * 10 9 8 30 30 H 1.08999 * 109.46998 * 300.00327 * 13 12 11 31 31 H 1.09000 * 109.46511 * 60.00249 * 13 12 11 32 32 H 0.96995 * 119.99704 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2189 0.0005 5 7 3.4092 1.2703 -0.0056 6 6 4.0454 2.5154 -0.1057 7 6 3.4811 3.6344 0.4887 8 6 4.1099 4.8610 0.3883 9 6 5.3016 4.9762 -0.3035 10 6 5.8700 3.8653 -0.8986 11 6 5.2486 2.6311 -0.7979 12 8 5.8096 1.5363 -1.3774 13 6 7.0442 1.7299 -2.0704 14 6 7.5102 0.4162 -2.6430 15 1 6.9225 -0.4774 -2.4925 16 6 8.6873 0.3548 -3.3583 17 7 9.4032 1.4427 -3.5413 18 14 9.2646 -1.2736 -4.0688 19 1 8.2875 -2.3378 -3.7253 20 1 9.3733 -1.1587 -5.5453 21 1 10.5923 -1.6188 -3.5001 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 3.9377 0.4595 0.0595 26 1 2.5502 3.5472 1.0292 27 1 3.6694 5.7317 0.8512 28 1 5.7893 5.9368 -0.3798 29 1 6.8011 3.9586 -1.4377 30 1 6.8988 2.4469 -2.8784 31 1 7.7940 2.1109 -1.3771 32 1 10.2311 1.3995 -4.0448 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154515607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:58 Heat of formation + Delta-G solvation = -91.876420 kcal Electronic energy + Delta-G solvation = -17858.112617 eV Core-core repulsion = 14784.440880 eV Total energy + Delta-G solvation = -3073.671737 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73682 -39.34592 -37.07475 -36.19161 -34.63731 -32.95263 -29.84041 -29.44350 -27.65411 -27.14598 -23.71536 -22.67718 -21.42343 -20.78073 -18.75852 -17.72210 -16.95370 -16.52328 -16.51645 -15.88171 -15.04560 -14.72095 -14.56975 -14.23052 -13.95831 -13.56428 -13.49470 -12.76588 -12.20214 -12.13597 -12.00736 -11.33480 -11.10573 -11.05572 -10.99362 -10.81924 -10.41253 -10.31173 -10.18602 -9.97420 -9.32845 -8.63843 -8.20976 -7.35587 -6.29351 -4.33260 1.58135 1.88405 2.22174 2.90664 3.20109 3.27059 3.32390 4.04418 4.19508 4.31224 4.44010 5.06051 5.08290 5.13533 5.28774 5.36573 5.41125 5.60342 5.74987 5.88384 6.16159 6.25216 6.54936 6.57421 6.75573 6.87675 6.90540 7.09466 7.25110 7.50739 7.62984 7.89563 8.30736 8.43168 8.78473 9.32247 10.81880 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.020543 B = 0.005860 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.666608 B = 4776.859267 C = 6061.784125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.369 6.369 3 C 0.648 3.352 4 O -0.565 6.565 5 N -0.633 5.633 6 C 0.101 3.899 7 C -0.084 4.084 8 C -0.162 4.162 9 C -0.088 4.088 10 C -0.197 4.197 11 C 0.137 3.863 12 O -0.318 6.318 13 C 0.194 3.806 14 C -0.524 4.524 15 H 0.071 0.929 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.913 3.087 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.281 1.281 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.102 0.898 25 H 0.422 0.578 26 H 0.140 0.860 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.139 0.861 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.056 1.377 7.617 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.283 6.283 3 C 0.401 3.599 4 O -0.454 6.454 5 N -0.284 5.284 6 C 0.008 3.992 7 C -0.104 4.104 8 C -0.180 4.180 9 C -0.107 4.107 10 C -0.216 4.216 11 C 0.087 3.913 12 O -0.231 6.231 13 C 0.121 3.879 14 C -0.562 4.562 15 H 0.089 0.911 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.739 3.261 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.206 1.206 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.120 0.880 25 H 0.259 0.741 26 H 0.158 0.842 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.157 0.843 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.365 1.624 7.496 14.551 hybrid contribution 0.726 -0.895 -0.547 1.276 sum -11.639 0.730 6.949 13.575 Atomic orbital electron populations 1.23188 0.74419 1.03414 1.02707 1.86266 1.24153 1.30859 1.87017 1.18068 0.83221 0.82223 0.76360 1.90961 1.64590 1.34472 1.55373 1.41693 1.02985 1.09572 1.74190 1.16797 0.93433 0.85065 1.03855 1.21023 1.00133 0.91158 0.98111 1.20790 0.96771 0.96998 1.03486 1.20956 0.95253 0.97977 0.96514 1.21294 1.02832 0.91812 1.05701 1.18980 0.92296 0.88096 0.91889 1.86081 1.41025 1.30249 1.65722 1.20681 0.77382 0.99080 0.90715 1.20988 1.06982 0.94036 1.34205 0.91110 1.24928 0.95840 0.97641 0.95727 1.69953 1.15007 1.27763 1.40424 0.86200 0.78642 0.82533 0.78682 1.19366 1.20655 1.20643 0.91884 0.91787 0.87994 0.74144 0.84245 0.86135 0.86098 0.84318 0.95949 0.95902 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 10.56 101.05 1.07 1.63 16 2 O -0.37 -5.14 10.62 -40.37 -0.43 -5.57 16 3 C 0.65 10.63 8.60 54.06 0.46 11.09 16 4 O -0.56 -10.18 13.55 -19.29 -0.26 -10.44 16 5 N -0.63 -10.69 5.20 -14.14 -0.07 -10.76 16 6 C 0.10 1.86 6.32 -83.48 -0.53 1.33 16 7 C -0.08 -1.40 8.70 -39.42 -0.34 -1.75 16 8 C -0.16 -2.42 10.04 -39.58 -0.40 -2.81 16 9 C -0.09 -1.37 10.04 -39.56 -0.40 -1.77 16 10 C -0.20 -3.67 9.04 -39.46 -0.36 -4.03 16 11 C 0.14 2.78 6.70 -39.08 -0.26 2.52 16 12 O -0.32 -7.37 9.67 -19.68 -0.19 -7.56 16 13 C 0.19 5.00 4.49 36.00 0.16 5.16 16 14 C -0.52 -14.57 9.43 -34.44 -0.32 -14.89 16 15 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 18 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.42 6.63 8.67 -40.82 -0.35 6.28 16 26 H 0.14 2.27 6.19 -52.49 -0.33 1.95 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.14 2.68 6.30 -52.49 -0.33 2.35 16 30 H 0.02 0.61 7.65 -51.93 -0.40 0.21 16 31 H 0.02 0.61 7.67 -51.93 -0.40 0.21 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 285.71 15.07 4.31 4.31 Total: -1.00 -30.83 285.71 -5.41 -36.24 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -3.46 Total: 4.51 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.01 Total: -1.95 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.66 Total: -35.43 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.88 Total: -23.56 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.83 -5.41 -36.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154515607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.640 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds