Wall clock time and date at job start Sun Mar 29 2020 23:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48490 * 109.47198 * 239.99926 * 3 2 1 5 5 H 1.48506 * 109.46650 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47066 * 119.99634 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21557 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.47886 * 120.00211 * 179.97438 * 13 12 11 16 16 C 1.41569 * 119.89570 * 179.97438 * 15 13 12 17 17 C 1.36325 * 118.24052 * 180.02562 * 16 15 13 18 18 C 1.41267 * 117.93021 * 0.02562 * 17 16 15 19 19 O 1.21986 * 120.22118 * 179.97438 * 18 17 16 20 20 N 1.34607 * 119.55289 * 359.97438 * 18 17 16 21 21 H 0.97003 * 119.10443 * 180.02562 * 20 18 17 22 22 N 1.28384 * 121.79650 * 359.71559 * 20 18 17 23 23 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 25 25 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 26 26 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 27 27 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 28 28 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 29 29 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 30 30 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 31 31 H 1.08004 * 120.88334 * 359.97438 * 16 15 13 32 32 H 1.07999 * 121.03652 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9829 -7.3714 0.0004 14 8 0.7878 -7.5934 0.0013 15 6 2.9438 -8.4955 -0.0008 16 6 2.4694 -9.8293 0.0008 17 6 3.3848 -10.8395 0.0001 18 6 4.7540 -10.4918 -0.0015 19 8 5.6085 -11.3623 -0.0016 20 7 5.1092 -9.1935 -0.0028 21 1 6.0512 -8.9621 -0.0043 22 7 4.2353 -8.2530 -0.0081 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 0.8531 -5.0451 -0.8897 29 1 0.8538 -5.0446 0.8903 30 1 3.3858 -5.9235 -0.0008 31 1 1.4103 -10.0410 0.0032 32 1 3.0729 -11.8735 0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221532066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:46 Heat of formation + Delta-G solvation = -26.782426 kcal Electronic energy + Delta-G solvation = -17045.578552 eV Core-core repulsion = 14007.022254 eV Total energy + Delta-G solvation = -3038.556299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.41384 -39.67424 -38.07887 -35.65617 -34.53194 -33.46111 -32.02939 -30.91492 -27.15832 -25.99094 -24.76968 -23.20989 -21.29359 -20.67368 -19.39064 -18.68800 -17.12477 -16.77886 -16.72918 -16.38759 -15.55047 -15.41830 -14.59694 -14.47653 -14.12685 -14.01075 -13.48689 -13.28779 -12.31736 -12.11700 -11.88242 -11.83553 -11.15878 -10.91135 -10.81078 -10.68296 -10.48584 -10.19569 -9.91738 -9.47930 -9.19977 -9.17399 -8.91133 -8.39709 -6.04636 -4.07852 -0.00760 0.74973 1.97170 2.52980 2.98043 3.23373 3.30382 3.35404 3.37205 3.60163 4.23935 4.34262 4.41892 4.56817 5.17142 5.31289 5.39244 5.41298 5.62668 5.69168 5.77339 6.08010 6.29212 6.52745 6.72399 6.93606 7.01444 7.39303 7.57431 7.59659 7.71819 7.93663 8.07221 8.34782 8.98578 9.56530 11.06594 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.048923 B = 0.003300 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.195382 B = 8483.636450 C = 9030.081845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.114 3.886 12 N -0.703 5.703 13 C 0.579 3.421 14 O -0.528 6.528 15 C 0.029 3.971 16 C -0.028 4.028 17 C -0.190 4.190 18 C 0.482 3.518 19 O -0.528 6.528 20 N -0.437 5.437 21 H 0.444 0.556 22 N -0.179 5.179 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.407 0.593 31 H 0.166 0.834 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.291 -18.251 0.001 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.008 4.008 12 N -0.353 5.353 13 C 0.361 3.639 14 O -0.403 6.403 15 C -0.144 4.144 16 C -0.052 4.052 17 C -0.220 4.220 18 C 0.279 3.721 19 O -0.406 6.406 20 N -0.186 5.186 21 H 0.290 0.710 22 N -0.010 5.010 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.243 0.757 31 H 0.184 0.816 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.213 -18.145 -0.004 19.526 hybrid contribution 0.928 0.461 0.000 1.037 sum 8.141 -17.684 -0.004 19.468 Atomic orbital electron populations 1.69951 1.06061 1.26851 1.50408 1.25025 0.94857 0.99302 0.95225 0.86640 0.79568 0.83075 0.78607 1.20231 1.21272 1.20238 1.21166 0.92983 0.90937 1.51163 0.92663 1.19023 0.93816 0.90775 0.97720 1.21913 0.99845 0.93111 1.01135 1.21804 0.91758 0.84756 1.02518 1.46116 1.11761 1.05220 1.72227 1.17226 0.86676 0.82076 0.77912 1.90843 1.14689 1.84199 1.50523 1.21964 0.89083 0.95795 1.07541 1.22303 1.03277 0.90293 0.89284 1.22695 0.90849 1.02362 1.06111 1.18161 0.91858 0.82645 0.79424 1.91036 1.52556 1.46266 1.50740 1.44855 1.10457 1.04244 1.59064 0.71009 1.71126 1.01947 1.21744 1.06195 0.92837 0.96197 0.96211 0.92546 0.92537 0.91167 0.91160 0.75740 0.81608 0.81251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 11 C 0.11 1.81 5.67 -4.04 -0.02 1.79 16 12 N -0.70 -9.15 5.54 -61.23 -0.34 -9.49 16 13 C 0.58 7.56 7.81 -12.31 -0.10 7.46 16 14 O -0.53 -8.44 16.38 5.32 0.09 -8.35 16 15 C 0.03 0.30 6.84 -82.83 -0.57 -0.27 16 16 C -0.03 -0.24 9.67 -39.00 -0.38 -0.61 16 17 C -0.19 -1.53 10.11 -39.12 -0.40 -1.92 16 18 C 0.48 4.78 7.76 -15.18 -0.12 4.66 16 19 O -0.53 -6.89 17.94 4.93 0.09 -6.80 16 20 N -0.44 -3.56 6.16 29.02 0.18 -3.38 16 21 H 0.44 2.51 8.91 -190.49 -1.70 0.82 16 22 N -0.18 -1.64 10.63 33.41 0.36 -1.28 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.41 4.50 7.81 -40.82 -0.32 4.18 16 31 H 0.17 1.17 7.72 -52.48 -0.41 0.77 16 32 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 290.88 15.07 4.38 4.38 Total: -1.00 -32.78 290.88 -6.72 -39.49 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.92 Total: -1.22 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.27 Total: -3.87 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.93 Total: -39.71 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.18 Total: -15.15 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.78 -6.72 -39.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221532066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.712 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds