Wall clock time and date at job start Sun Mar 29 2020 23:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48490 * 109.47198 * 239.99926 * 3 2 1 5 5 H 1.48506 * 109.46650 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47066 * 119.99634 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21557 * 119.99929 * 0.02562 * 13 12 11 15 15 C 1.47886 * 120.00211 * 179.97438 * 13 12 11 16 16 C 1.41569 * 119.89570 * 179.97438 * 15 13 12 17 17 C 1.36325 * 118.24052 * 180.02562 * 16 15 13 18 18 C 1.41267 * 117.93021 * 0.02562 * 17 16 15 19 19 O 1.21986 * 120.22118 * 179.97438 * 18 17 16 20 20 N 1.34607 * 119.55289 * 359.97438 * 18 17 16 21 21 H 0.97003 * 119.10443 * 180.02562 * 20 18 17 22 22 N 1.28384 * 121.79650 * 359.71559 * 20 18 17 23 23 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 25 25 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 26 26 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 27 27 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 28 28 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 29 29 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 30 30 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 31 31 H 1.08004 * 120.88334 * 359.97438 * 16 15 13 32 32 H 1.07999 * 121.03652 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9829 -7.3714 0.0004 14 8 0.7878 -7.5934 0.0013 15 6 2.9438 -8.4955 -0.0008 16 6 2.4694 -9.8293 0.0008 17 6 3.3848 -10.8395 0.0001 18 6 4.7540 -10.4918 -0.0015 19 8 5.6085 -11.3623 -0.0016 20 7 5.1092 -9.1935 -0.0028 21 1 6.0512 -8.9621 -0.0043 22 7 4.2353 -8.2530 -0.0081 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6044 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 0.8531 -5.0451 -0.8897 29 1 0.8538 -5.0446 0.8903 30 1 3.3858 -5.9235 -0.0008 31 1 1.4103 -10.0410 0.0032 32 1 3.0729 -11.8735 0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221532066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:46 Heat of formation + Delta-G solvation = -51.781885 kcal Electronic energy + Delta-G solvation = -17046.662610 eV Core-core repulsion = 14007.022254 eV Total energy + Delta-G solvation = -3039.640357 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.18318 -40.75193 -38.94801 -37.03447 -35.30884 -35.20767 -33.34171 -32.20291 -28.73951 -26.96694 -25.69762 -24.74465 -22.35044 -22.26041 -20.23671 -19.61558 -18.51828 -17.93070 -17.52855 -17.50858 -16.84621 -16.63790 -16.39444 -15.46542 -15.44682 -14.80663 -14.45416 -14.25038 -14.17360 -13.74398 -13.46438 -12.90393 -12.70342 -12.53593 -12.38478 -11.86218 -11.72705 -11.63033 -11.33176 -11.18735 -10.98580 -10.51637 -10.21029 -9.86294 -8.16991 -6.27768 -0.72101 -0.06073 1.24504 1.43860 1.46202 1.53973 1.62837 1.96882 2.38588 2.44299 2.77929 3.17071 3.53969 3.64435 3.70522 4.18717 4.27039 4.47619 4.60454 4.76455 4.84007 4.99401 4.99487 5.14140 5.21618 5.37264 5.55784 5.76022 5.88304 6.21629 6.26294 6.42917 6.76252 6.89996 7.03467 7.41656 8.94730 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.048923 B = 0.003300 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.195382 B = 8483.636450 C = 9030.081845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.024 3.976 10 C -0.105 4.105 11 C 0.127 3.873 12 N -0.696 5.696 13 C 0.583 3.417 14 O -0.559 6.559 15 C 0.022 3.978 16 C -0.024 4.024 17 C -0.181 4.181 18 C 0.477 3.523 19 O -0.563 6.563 20 N -0.422 5.422 21 H 0.455 0.545 22 N -0.171 5.171 23 H 0.263 0.737 24 H -0.005 1.005 25 H -0.005 1.005 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.419 0.581 31 H 0.180 0.820 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.895 -18.705 0.000 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.014 4.014 10 C -0.142 4.142 11 C 0.004 3.996 12 N -0.348 5.348 13 C 0.367 3.633 14 O -0.435 6.435 15 C -0.150 4.150 16 C -0.047 4.047 17 C -0.211 4.211 18 C 0.276 3.724 19 O -0.443 6.443 20 N -0.173 5.173 21 H 0.304 0.696 22 N -0.003 5.003 23 H 0.072 0.928 24 H 0.013 0.987 25 H 0.013 0.987 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.256 0.744 31 H 0.197 0.803 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.856 -18.595 -0.005 20.597 hybrid contribution 0.439 0.588 0.000 0.734 sum 9.295 -18.007 -0.004 20.264 Atomic orbital electron populations 1.70095 1.07846 1.27798 1.51716 1.25981 0.95714 1.03392 0.94879 0.85518 0.78229 0.78188 0.79212 1.19108 1.21278 1.19120 1.21681 0.93755 0.92153 1.50405 0.91633 1.18936 0.94439 0.92727 0.95301 1.21618 0.98518 0.91900 1.02206 1.21395 0.91718 0.84768 1.01731 1.45884 1.11858 1.04683 1.72334 1.17462 0.86705 0.82340 0.76807 1.90832 1.16234 1.84684 1.51779 1.21583 0.89009 0.95467 1.08935 1.22367 1.04057 0.89292 0.89011 1.22878 0.89674 1.03434 1.05105 1.18450 0.92317 0.82635 0.78964 1.91030 1.53517 1.47164 1.52611 1.44857 1.10957 1.03802 1.57661 0.69617 1.71096 1.01751 1.21760 1.05654 0.92845 0.98681 0.98694 0.91395 0.91385 0.92090 0.92081 0.74366 0.80275 0.78975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -29.41 9.11 25.60 0.23 -29.18 16 8 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.18 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 11 C 0.13 4.01 5.67 86.38 0.49 4.50 16 12 N -0.70 -17.16 5.54 -465.90 -2.58 -19.74 16 13 C 0.58 14.47 7.81 86.80 0.68 15.15 16 14 O -0.56 -17.46 16.38 -3.89 -0.06 -17.52 16 15 C 0.02 0.41 6.84 42.59 0.29 0.70 16 16 C -0.02 -0.35 9.67 22.65 0.22 -0.13 16 17 C -0.18 -2.48 10.11 22.57 0.23 -2.25 16 18 C 0.48 8.56 7.76 85.01 0.66 9.22 16 19 O -0.56 -13.93 17.94 -5.27 -0.09 -14.03 16 20 N -0.42 -6.00 6.16 -180.30 -1.11 -7.11 16 21 H 0.46 4.24 8.91 -220.03 -1.96 2.28 16 22 N -0.17 -2.74 10.63 -48.20 -0.51 -3.25 16 23 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 24 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.42 8.37 7.81 -92.71 -0.72 7.64 16 31 H 0.18 2.14 7.72 -2.91 -0.02 2.12 16 32 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -70.37 290.88 0.00 -70.37 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -1.52 Total: 5.86 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 3.57 Total: -3.91 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -3.92 Total: -85.75 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.16 Total: -31.55 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -70.37 0.00 -70.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221532066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.589 kcal (2) G-P(sol) polarization free energy of solvation -70.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds