Wall clock time and date at job start Mon Mar 30 2020 00:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99881 * 2 1 4 4 H 1.48502 * 109.47432 * 89.99897 * 3 2 1 5 5 H 1.48509 * 109.46693 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47418 * 329.99000 * 3 2 1 7 7 C 1.37873 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00126 * 358.18208 * 7 2 1 9 9 C 1.50710 * 119.99460 * 178.17803 * 7 2 1 10 10 O 1.42893 * 112.94591 * 55.35386 * 9 7 2 11 11 C 1.53943 * 113.73969 * 283.75965 * 9 7 2 12 12 N 1.47812 * 86.03674 * 222.08975 * 11 9 7 13 13 C 1.34778 * 134.45776 * 204.65312 * 12 11 9 14 14 O 1.21274 * 120.00369 * 179.86575 * 13 12 11 15 15 C 1.50706 * 119.99649 * 359.86136 * 13 12 11 16 16 N 1.46508 * 109.46891 * 180.02562 * 15 13 12 17 17 C 1.34942 * 126.03983 * 124.71557 * 16 15 13 18 18 C 1.35316 * 107.74816 * 179.83708 * 17 16 15 19 19 C 1.39877 * 107.91792 * 0.42285 * 18 17 16 20 20 N 1.30837 * 108.20034 * 359.73570 * 19 18 17 21 21 C 1.47577 * 91.05143 * 24.54953 * 12 11 9 22 22 H 0.96997 * 120.00619 * 178.28251 * 1 2 3 23 23 H 0.96694 * 114.00533 * 294.08866 * 10 9 7 24 24 H 1.09000 * 113.77482 * 336.35033 * 11 9 7 25 25 H 1.09001 * 113.76770 * 107.74988 * 11 9 7 26 26 H 1.08997 * 109.47267 * 300.00007 * 15 13 12 27 27 H 1.08999 * 109.47490 * 60.00211 * 15 13 12 28 28 H 1.08007 * 126.12645 * 359.97438 * 17 16 15 29 29 H 1.07993 * 126.04340 * 180.16116 * 18 17 16 30 30 H 1.07993 * 125.89709 * 179.75611 * 19 18 17 31 31 H 1.08996 * 113.77269 * 221.15139 * 21 12 11 32 32 H 1.09002 * 113.76345 * 89.75428 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0044 -1.1941 0.0005 8 1 1.4648 -2.1290 0.0306 9 6 3.5110 -1.1944 -0.0410 10 8 4.0975 -0.4288 1.0134 11 6 4.0927 -0.8817 -1.4315 12 7 5.0610 -1.9642 -1.1567 13 6 6.3011 -2.2556 -1.5968 14 8 6.8757 -3.2402 -1.1829 15 6 6.9737 -1.3580 -2.6033 16 7 8.3031 -1.8873 -2.9181 17 6 8.7670 -2.1874 -4.1492 18 6 10.0339 -2.6430 -4.0129 19 6 10.3517 -2.6296 -2.6508 20 7 9.3150 -2.1767 -1.9936 21 6 4.1261 -2.5960 -0.2055 22 1 -0.4851 -0.8396 -0.0252 23 1 3.9174 0.5196 0.9581 24 1 3.4103 -1.1009 -2.2527 25 1 4.5463 0.1066 -1.5059 26 1 6.3741 -1.3184 -3.5127 27 1 7.0706 -0.3549 -2.1880 28 1 8.2251 -2.0809 -5.0774 29 1 10.6832 -2.9644 -4.8137 30 1 11.2908 -2.9392 -2.2166 31 1 4.6062 -2.9738 0.6971 32 1 3.4534 -3.3197 -0.6659 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331843216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:51 Heat of formation + Delta-G solvation = 52.827550 kcal Electronic energy + Delta-G solvation = -18215.659531 eV Core-core repulsion = 15180.555380 eV Total energy + Delta-G solvation = -3035.104151 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.12112 -39.78884 -37.70902 -34.45775 -33.23171 -32.70014 -30.08888 -29.36394 -27.15987 -25.67349 -24.72041 -21.30249 -21.04389 -20.05949 -18.77851 -18.05473 -17.27709 -16.85035 -16.07899 -15.58435 -15.18002 -14.83183 -14.02147 -13.87260 -13.73944 -13.43820 -13.11354 -12.76387 -12.58572 -12.38256 -12.11175 -11.94548 -11.48859 -10.92959 -10.55369 -10.48277 -10.03073 -9.77702 -9.61164 -9.26780 -8.94265 -8.75588 -8.55903 -8.14680 -6.76567 -4.53926 1.91204 2.41499 2.85158 2.92768 2.99082 3.10391 3.24680 3.26795 4.12573 4.41747 4.62347 4.70161 4.78131 5.02359 5.09834 5.12963 5.43817 5.54947 5.75606 5.88073 5.90746 6.00080 6.10212 6.22582 6.26465 6.48766 6.67606 6.96908 7.45746 7.77859 8.01162 8.10422 8.39437 8.42274 8.52516 9.22334 10.59252 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.044174 B = 0.005236 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.709795 B = 5346.175469 C = 5525.219301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.036 3.964 3 Si 1.038 2.962 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.609 4.609 8 H 0.072 0.928 9 C 0.198 3.802 10 O -0.555 6.555 11 C 0.055 3.945 12 N -0.635 5.635 13 C 0.517 3.483 14 O -0.530 6.530 15 C 0.120 3.880 16 N -0.359 5.359 17 C 0.050 3.950 18 C -0.275 4.275 19 C 0.034 3.966 20 N -0.264 5.264 21 C 0.131 3.869 22 H 0.274 0.726 23 H 0.353 0.647 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.172 0.828 29 H 0.146 0.854 30 H 0.181 0.819 31 H 0.075 0.925 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.606 0.650 -9.359 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.172 4.172 3 Si 0.867 3.133 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.646 4.646 8 H 0.090 0.910 9 C 0.157 3.843 10 O -0.364 6.364 11 C -0.067 4.067 12 N -0.371 5.371 13 C 0.303 3.697 14 O -0.406 6.406 15 C -0.006 4.006 16 N -0.141 5.141 17 C -0.096 4.096 18 C -0.305 4.305 19 C -0.153 4.153 20 N -0.084 5.084 21 C 0.009 3.991 22 H 0.084 0.916 23 H 0.203 0.797 24 H 0.115 0.885 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.130 0.870 28 H 0.189 0.811 29 H 0.164 0.836 30 H 0.198 0.802 31 H 0.093 0.907 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.477 1.479 -7.828 14.804 hybrid contribution 0.174 -1.359 -1.164 1.798 sum 12.651 0.120 -8.992 15.522 Atomic orbital electron populations 1.70769 1.06715 1.31008 1.43894 1.25816 0.96482 1.02488 0.92368 0.84204 0.75028 0.76070 0.77998 1.20011 1.20099 1.20717 1.22258 0.88900 0.96163 1.57321 0.91016 1.20548 0.92660 0.88512 0.82567 1.86504 1.77802 1.21075 1.51035 1.24858 0.88746 0.89971 1.03156 1.50201 1.12989 1.29522 1.44410 1.20010 0.81124 0.86013 0.82529 1.90738 1.63698 1.28210 1.57965 1.21435 0.80035 0.98150 1.00947 1.48163 1.11360 1.50119 1.04489 1.22535 0.96294 1.01006 0.89737 1.21448 0.97219 1.14501 0.97290 1.23908 0.98121 1.00368 0.92934 1.77542 0.96192 1.19516 1.15193 1.23262 0.87700 0.96964 0.91161 0.91562 0.79694 0.88543 0.90800 0.86025 0.87035 0.81056 0.83648 0.80220 0.90651 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 13.70 55.43 0.76 -24.05 16 2 C 0.04 0.93 5.47 -17.82 -0.10 0.83 16 3 Si 1.04 21.39 24.78 -169.99 -4.21 17.18 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.27 -4.83 4.72 56.52 0.27 -4.56 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.61 -15.32 9.05 -34.44 -0.31 -15.63 16 8 H 0.07 1.94 8.04 -52.49 -0.42 1.51 16 9 C 0.20 4.35 1.06 -90.84 -0.10 4.26 16 10 O -0.55 -12.56 13.26 -35.23 -0.47 -13.03 16 11 C 0.06 1.01 6.87 -2.84 -0.02 0.99 16 12 N -0.64 -12.15 3.61 -178.12 -0.64 -12.79 16 13 C 0.52 9.75 8.09 -10.98 -0.09 9.66 16 14 O -0.53 -12.11 16.43 5.56 0.09 -12.02 16 15 C 0.12 1.67 6.74 -5.19 -0.03 1.64 16 16 N -0.36 -5.45 3.40 -62.54 -0.21 -5.66 16 17 C 0.05 0.59 11.45 -17.23 -0.20 0.40 16 18 C -0.27 -3.22 10.80 -40.01 -0.43 -3.65 16 19 C 0.03 0.46 12.03 -17.36 -0.21 0.25 16 20 N -0.26 -4.58 11.64 30.62 0.36 -4.22 16 21 C 0.13 2.70 8.23 -2.97 -0.02 2.68 16 22 H 0.27 7.60 8.71 -40.82 -0.36 7.25 16 23 H 0.35 7.22 4.32 45.56 0.20 7.42 16 24 H 0.10 1.66 8.09 -51.93 -0.42 1.24 16 25 H 0.07 1.22 6.57 -51.93 -0.34 0.88 16 26 H 0.12 1.23 8.07 -51.93 -0.42 0.81 16 27 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 LS Contribution 277.87 15.07 4.19 4.19 Total: -1.00 -33.42 277.87 -4.88 -38.30 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -3.23 Total: 10.70 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.51 Total: 1.42 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.26 Total: -46.73 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.38 Total: -25.05 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.21 Total: 17.18 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.42 -4.88 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331843216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.128 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds