Wall clock time and date at job start Mon Mar 30 2020 00:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99611 * 2 1 4 4 H 1.48504 * 109.46986 * 239.99580 * 3 2 1 5 5 H 1.48498 * 109.47594 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47239 * 119.99849 * 3 2 1 7 7 C 1.37871 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47456 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00195 * 179.97438 * 11 10 9 13 13 O 1.21573 * 119.99941 * 0.02562 * 12 11 10 14 14 C 1.47720 * 120.00116 * 180.27923 * 12 11 10 15 15 C 1.40939 * 125.97676 * 179.44336 * 14 12 11 16 16 C 1.36178 * 107.95140 * 179.71124 * 15 14 12 17 17 N 1.35803 * 107.30853 * 0.80182 * 16 15 14 18 18 N 1.31846 * 125.97255 * 359.74976 * 14 12 11 19 19 C 1.47422 * 108.06622 * 178.96279 * 17 16 15 20 20 C 1.54654 * 102.35671 * 344.73699 * 19 17 16 21 21 O 1.36119 * 140.87818 * 180.74622 * 16 15 14 22 22 H 0.96996 * 120.00389 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.47031 * 60.00619 * 9 7 2 24 24 H 1.08997 * 109.47682 * 300.00197 * 9 7 2 25 25 H 1.08998 * 109.47059 * 60.00333 * 10 9 7 26 26 H 1.09002 * 109.47542 * 300.00767 * 10 9 7 27 27 H 0.97000 * 120.00069 * 0.02562 * 11 10 9 28 28 H 1.08002 * 126.02380 * 359.87067 * 15 14 12 29 29 H 1.08996 * 110.83186 * 102.95889 * 19 17 16 30 30 H 1.09008 * 110.83201 * 226.52809 * 19 17 16 31 31 H 1.09002 * 110.85315 * 266.65848 * 20 19 17 32 32 H 1.08992 * 111.02871 * 143.10416 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0979 0.0013 13 8 3.4025 -6.0979 0.0008 14 6 1.4482 -7.3773 -0.0044 15 6 2.0221 -8.6645 -0.0167 16 6 1.0098 -9.5753 -0.0118 17 7 -0.1578 -8.8818 -0.0151 18 7 0.1369 -7.5145 -0.0045 19 6 -1.2665 -9.8532 -0.0352 20 6 -0.5514 -11.1633 -0.4402 21 8 0.7992 -10.9201 -0.0058 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.8726 -3.6039 0.8909 26 1 2.8714 -3.6046 -0.8890 27 1 0.5429 -4.9308 0.0020 28 1 3.0785 -8.8889 -0.0257 29 1 -1.7175 -9.9472 0.9526 30 1 -2.0134 -9.5737 -0.7784 31 1 -0.5913 -11.3094 -1.5197 32 1 -0.9787 -12.0196 0.0815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355236419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:21 Heat of formation + Delta-G solvation = 25.330254 kcal Electronic energy + Delta-G solvation = -17327.846517 eV Core-core repulsion = 14291.549993 eV Total energy + Delta-G solvation = -3036.296523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.46932 -39.51411 -38.21776 -34.88109 -33.53293 -32.82505 -30.52753 -29.31906 -28.97280 -25.44190 -24.04130 -22.69780 -21.57324 -20.86723 -19.78534 -17.97419 -17.20112 -16.54791 -16.31983 -15.68930 -15.53802 -15.08260 -14.80104 -14.44820 -14.36488 -13.82452 -13.26196 -13.02315 -12.95293 -12.64517 -12.26843 -11.60543 -11.19198 -11.04092 -10.99382 -10.63697 -10.30298 -10.01779 -9.52625 -9.37687 -9.24081 -8.68768 -8.53377 -8.33301 -6.05801 -4.08847 1.26313 1.64269 2.02156 2.54458 3.34038 3.37602 3.40356 3.51542 3.59910 3.69116 4.15631 4.29399 4.44664 4.58609 4.73576 4.84508 5.07484 5.24649 5.31062 5.43283 5.76489 6.22101 6.36765 6.37676 6.64365 6.75070 6.87054 7.29719 7.56025 7.65508 7.92039 8.00511 8.29862 8.55709 8.96901 9.55708 11.05796 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.054537 B = 0.003583 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.288050 B = 7811.974894 C = 8286.996688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.703 5.703 12 C 0.592 3.408 13 O -0.532 6.532 14 C 0.062 3.938 15 C -0.213 4.213 16 C 0.228 3.772 17 N -0.416 5.416 18 N -0.217 5.217 19 C 0.098 3.902 20 C 0.041 3.959 21 O -0.280 6.280 22 H 0.262 0.738 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.405 0.595 28 H 0.165 0.835 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.650 -22.647 -0.798 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.352 5.352 12 C 0.374 3.626 13 O -0.407 6.407 14 C -0.105 4.105 15 C -0.243 4.243 16 C 0.061 3.939 17 N -0.213 5.213 18 N -0.046 5.046 19 C -0.023 4.023 20 C -0.035 4.035 21 O -0.187 6.187 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.240 0.760 28 H 0.183 0.817 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.037 -22.060 -0.735 22.639 hybrid contribution 0.311 0.362 -0.019 0.477 sum -4.726 -21.698 -0.754 22.219 Atomic orbital electron populations 1.69949 1.06097 1.26964 1.50283 1.24995 0.94889 0.99398 0.95003 0.86562 0.79494 0.82633 0.78780 1.20103 1.21291 1.20098 1.21010 0.93243 0.90334 1.51479 0.92193 1.19334 0.94212 0.90959 0.98056 1.21847 0.96157 0.80947 1.01217 1.46253 1.11126 1.05994 1.71870 1.16829 0.86359 0.81584 0.77859 1.90793 1.12480 1.86647 1.50746 1.22217 0.90475 0.95210 1.02624 1.20085 0.98899 0.87365 1.17908 1.20757 0.90124 0.81931 1.01093 1.50688 1.06615 1.04489 1.59491 1.77750 1.14450 0.88498 1.23929 1.23228 0.89211 0.84497 1.05336 1.24447 0.78953 0.97636 1.02441 1.87134 1.31611 1.16500 1.83443 0.92802 0.95800 0.95790 0.92050 0.92054 0.76036 0.81697 0.87689 0.86905 0.88822 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.61 9.11 -34.45 -0.31 -14.92 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.70 -13.43 5.55 -61.29 -0.34 -13.77 16 12 C 0.59 11.21 7.83 -12.39 -0.10 11.11 16 13 O -0.53 -11.39 16.90 5.30 0.09 -11.30 16 14 C 0.06 1.03 7.09 -82.96 -0.59 0.44 16 15 C -0.21 -3.12 10.60 -39.30 -0.42 -3.54 16 16 C 0.23 2.89 8.32 -16.53 -0.14 2.76 16 17 N -0.42 -5.11 5.01 -59.63 -0.30 -5.41 16 18 N -0.22 -3.36 12.39 33.32 0.41 -2.95 16 19 C 0.10 0.61 8.10 -2.67 -0.02 0.59 16 20 C 0.04 0.19 8.08 38.03 0.31 0.50 16 21 O -0.28 -2.75 11.19 -20.12 -0.23 -2.98 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.40 7.20 8.17 -40.82 -0.33 6.87 16 28 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 287.87 15.07 4.34 4.34 Total: -1.00 -34.17 287.87 -5.52 -39.69 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.68 Total: 0.29 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.53 Total: 1.26 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.51 Total: -47.81 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.14 Total: -14.28 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.17 -5.52 -39.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355236419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.018 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds