Wall clock time and date at job start Sun Mar 29 2020 23:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 359.97438 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08726 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47124 * 179.97438 * 10 9 8 12 12 O 1.21209 * 120.00142 * 359.97438 * 11 10 9 13 13 O 1.34316 * 119.99844 * 179.97438 * 11 10 9 14 14 C 1.34913 * 116.99750 * 179.97438 * 13 11 10 15 15 H 1.08004 * 120.00359 * 0.02562 * 14 13 11 16 16 C 1.38758 * 120.00158 * 179.97438 * 14 13 11 17 17 N 1.31441 * 120.00435 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99822 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47095 * 89.99346 * 18 16 14 20 20 H 1.48499 * 109.46910 * 209.99885 * 18 16 14 21 21 H 1.48506 * 109.46941 * 329.99412 * 18 16 14 22 22 H 1.08997 * 109.46745 * 60.00389 * 1 2 3 23 23 H 1.09000 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47206 * 300.00224 * 1 2 3 25 25 H 1.07999 * 119.98747 * 0.25239 * 4 3 2 26 26 H 1.07997 * 119.90793 * 179.97438 * 5 4 3 27 27 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 28 28 H 1.07999 * 120.00480 * 179.97438 * 7 6 5 29 29 H 0.96996 * 119.99633 * 180.02562 * 9 8 7 30 30 H 1.09000 * 109.46950 * 300.00065 * 10 9 8 31 31 H 1.08998 * 109.47411 * 59.99531 * 10 9 8 32 32 H 0.96996 * 120.00130 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 -0.0005 5 6 1.9229 3.6060 0.0000 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0011 8 6 3.4376 1.2868 0.0016 9 7 4.2034 0.1152 0.0016 10 6 5.6662 0.1962 0.0016 11 6 6.2463 -1.1946 0.0023 12 8 5.5108 -2.1581 0.0031 13 8 7.5784 -1.3666 0.0019 14 6 8.0319 -2.6372 0.0030 15 1 7.3325 -3.4603 0.0038 16 6 9.3969 -2.8868 0.0021 17 7 9.8387 -4.1247 0.0027 18 14 10.6065 -1.4634 0.0001 19 1 10.9280 -1.0850 1.3995 20 1 11.8504 -1.8720 -0.7006 21 1 10.0026 -0.3016 -0.7006 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.2152 2.3193 0.0032 26 1 1.3342 4.5114 -0.0008 27 1 3.7903 4.6452 0.0005 28 1 5.1400 2.5874 0.0011 29 1 3.7656 -0.7503 0.0016 30 1 6.0005 0.7294 -0.8884 31 1 6.0006 0.7294 0.8915 32 1 10.7929 -4.2991 0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390547141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:53 Heat of formation + Delta-G solvation = -81.127522 kcal Electronic energy + Delta-G solvation = -17606.509675 eV Core-core repulsion = 14533.304045 eV Total energy + Delta-G solvation = -3073.205630 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.20603 -39.29039 -37.46898 -35.96155 -34.68117 -32.37177 -30.16343 -30.05338 -27.42174 -26.87535 -24.94773 -22.20229 -21.69557 -19.91183 -18.38659 -18.07480 -17.27168 -16.24084 -15.97071 -15.77760 -15.36154 -15.15182 -14.61350 -14.35528 -13.97712 -13.57255 -13.49441 -13.10183 -12.51757 -12.46106 -12.12245 -11.99224 -11.41189 -11.28717 -11.09426 -10.99976 -10.56965 -10.43246 -10.03470 -9.76925 -9.33238 -8.73702 -8.51480 -7.08672 -6.42091 -4.18882 1.43474 1.63691 3.06155 3.16745 3.26021 3.29568 3.34957 3.45486 3.89233 4.19110 4.23589 4.82412 4.95021 5.04688 5.08654 5.08834 5.22939 5.41371 5.48021 5.51794 5.62978 5.64418 5.78378 6.14338 6.18020 6.36843 6.62635 6.80415 7.12684 7.57169 7.65533 7.97016 8.01902 8.51371 8.94753 9.57187 10.65990 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.004652 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.278724 B = 6018.044347 C = 6780.876818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.319 6.319 3 C 0.051 3.949 4 C -0.163 4.163 5 C -0.151 4.151 6 C -0.103 4.103 7 C -0.175 4.175 8 C 0.207 3.793 9 N -0.728 5.728 10 C 0.141 3.859 11 C 0.402 3.598 12 O -0.535 6.535 13 O -0.246 6.246 14 C -0.384 4.384 15 H 0.110 0.890 16 C 0.067 3.933 17 N -0.872 5.872 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.259 1.259 22 H 0.051 0.949 23 H 0.097 0.903 24 H 0.051 0.949 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.417 0.583 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.262 15.406 -0.020 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.233 6.233 3 C 0.003 3.997 4 C -0.182 4.182 5 C -0.171 4.171 6 C -0.122 4.122 7 C -0.199 4.199 8 C 0.102 3.898 9 N -0.362 5.362 10 C 0.015 3.985 11 C 0.247 3.753 12 O -0.430 6.430 13 O -0.154 6.154 14 C -0.459 4.459 15 H 0.128 0.872 16 C -0.137 4.137 17 N -0.510 5.510 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 H 0.070 0.930 23 H 0.115 0.885 24 H 0.070 0.930 25 H 0.142 0.858 26 H 0.135 0.865 27 H 0.139 0.861 28 H 0.148 0.852 29 H 0.256 0.744 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.938 14.798 -0.024 20.329 hybrid contribution 0.223 0.209 0.015 0.306 sum -13.716 15.007 -0.009 20.331 Atomic orbital electron populations 1.22960 0.78778 1.03637 1.00834 1.86050 1.20950 1.26497 1.89764 1.18451 0.90279 0.84955 1.06060 1.20940 0.99339 0.91889 1.06040 1.20629 0.94543 0.96540 1.05421 1.20782 0.93638 0.97579 1.00199 1.20569 1.00081 0.90136 1.09102 1.17200 0.87116 0.87510 0.97941 1.44381 1.03572 1.06814 1.81473 1.20397 0.81102 0.93360 1.03596 1.22733 0.82462 0.90842 0.79253 1.90601 1.60392 1.42315 1.49676 1.83482 1.21711 1.33297 1.76866 1.20653 0.93060 0.79913 1.52307 0.87212 1.24555 0.96482 0.97287 0.95376 1.69602 1.15699 1.18595 1.47138 0.86204 0.79601 0.82066 0.78999 1.19762 1.20669 1.18309 0.93022 0.88505 0.93033 0.85808 0.86471 0.86142 0.85221 0.74387 0.89138 0.89144 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.52 9.74 -19.78 -0.19 -4.71 16 3 C 0.05 0.72 6.70 -39.08 -0.26 0.46 16 4 C -0.16 -1.89 9.04 -39.47 -0.36 -2.25 16 5 C -0.15 -1.63 10.04 -39.56 -0.40 -2.02 16 6 C -0.10 -1.15 10.04 -39.58 -0.40 -1.55 16 7 C -0.18 -2.27 9.31 -39.41 -0.37 -2.63 16 8 C 0.21 3.11 6.67 -83.56 -0.56 2.56 16 9 N -0.73 -12.37 5.70 -59.67 -0.34 -12.71 16 10 C 0.14 2.41 5.51 -5.19 -0.03 2.38 16 11 C 0.40 9.32 7.97 36.01 0.29 9.61 16 12 O -0.53 -14.06 14.90 -19.05 -0.28 -14.34 16 13 O -0.25 -6.38 8.58 -20.70 -0.18 -6.56 16 14 C -0.38 -11.35 10.10 30.92 0.31 -11.04 16 15 H 0.11 3.59 7.09 -52.48 -0.37 3.22 16 16 C 0.07 1.91 5.49 -17.53 -0.10 1.82 16 17 N -0.87 -25.67 13.96 55.48 0.77 -24.89 16 18 Si 0.91 21.07 28.62 -169.99 -4.86 16.20 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 22 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 23 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.12 1.13 6.30 -52.49 -0.33 0.80 16 26 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.13 1.50 6.74 -52.49 -0.35 1.14 16 29 H 0.42 7.84 6.80 -40.82 -0.28 7.56 16 30 H 0.09 1.35 7.95 -51.93 -0.41 0.94 16 31 H 0.09 1.34 7.95 -51.93 -0.41 0.93 16 32 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 284.24 15.07 4.28 4.28 Total: -1.00 -32.88 284.24 -5.03 -37.91 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.36 Total: 6.18 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.87 Total: -1.37 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.43 Total: -37.60 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.65 Total: -25.61 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.88 -5.03 -37.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390547141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.213 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds