Wall clock time and date at job start Sun Mar 29 2020 23:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 359.97438 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08726 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47124 * 179.97438 * 10 9 8 12 12 O 1.21209 * 120.00142 * 359.97438 * 11 10 9 13 13 O 1.34316 * 119.99844 * 179.97438 * 11 10 9 14 14 C 1.34913 * 116.99750 * 179.97438 * 13 11 10 15 15 H 1.08004 * 120.00359 * 0.02562 * 14 13 11 16 16 C 1.38758 * 120.00158 * 179.97438 * 14 13 11 17 17 N 1.31441 * 120.00435 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99822 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47095 * 89.99346 * 18 16 14 20 20 H 1.48499 * 109.46910 * 209.99885 * 18 16 14 21 21 H 1.48506 * 109.46941 * 329.99412 * 18 16 14 22 22 H 1.08997 * 109.46745 * 60.00389 * 1 2 3 23 23 H 1.09000 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47206 * 300.00224 * 1 2 3 25 25 H 1.07999 * 119.98747 * 0.25239 * 4 3 2 26 26 H 1.07997 * 119.90793 * 179.97438 * 5 4 3 27 27 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 28 28 H 1.07999 * 120.00480 * 179.97438 * 7 6 5 29 29 H 0.96996 * 119.99633 * 180.02562 * 9 8 7 30 30 H 1.09000 * 109.46950 * 300.00065 * 10 9 8 31 31 H 1.08998 * 109.47411 * 59.99531 * 10 9 8 32 32 H 0.96996 * 120.00130 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 -0.0005 5 6 1.9229 3.6060 0.0000 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0011 8 6 3.4376 1.2868 0.0016 9 7 4.2034 0.1152 0.0016 10 6 5.6662 0.1962 0.0016 11 6 6.2463 -1.1946 0.0023 12 8 5.5108 -2.1581 0.0031 13 8 7.5784 -1.3666 0.0019 14 6 8.0319 -2.6372 0.0030 15 1 7.3325 -3.4603 0.0038 16 6 9.3969 -2.8868 0.0021 17 7 9.8387 -4.1247 0.0027 18 14 10.6065 -1.4634 0.0001 19 1 10.9280 -1.0850 1.3995 20 1 11.8504 -1.8720 -0.7006 21 1 10.0026 -0.3016 -0.7006 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.2152 2.3193 0.0032 26 1 1.3342 4.5114 -0.0008 27 1 3.7903 4.6452 0.0005 28 1 5.1400 2.5874 0.0011 29 1 3.7656 -0.7503 0.0016 30 1 6.0005 0.7294 -0.8884 31 1 6.0006 0.7294 0.8915 32 1 10.7929 -4.2991 0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390547141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:53 Heat of formation + Delta-G solvation = -103.998335 kcal Electronic energy + Delta-G solvation = -17607.501428 eV Core-core repulsion = 14533.304045 eV Total energy + Delta-G solvation = -3074.197383 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43820 -40.94425 -38.49334 -37.68595 -36.08579 -34.54869 -31.29931 -30.99555 -28.68811 -27.93469 -26.76224 -23.23022 -22.79137 -21.55249 -20.22727 -19.56329 -18.54448 -17.76670 -17.22182 -17.07346 -16.65585 -16.58584 -16.04907 -15.51094 -15.10395 -14.96483 -14.85166 -14.43751 -14.19997 -13.82886 -13.59866 -13.14886 -12.88514 -12.44124 -12.33747 -12.26630 -11.92717 -11.88396 -11.83230 -11.28988 -11.10855 -10.86339 -9.42550 -8.57685 -8.16122 -6.46517 0.52719 0.70378 1.21961 1.34847 1.49488 1.56883 1.93080 2.27688 2.43744 2.74054 2.88167 2.97710 3.96511 4.11387 4.16832 4.29020 4.33451 4.35089 4.42017 4.46088 4.59421 4.71001 4.73868 4.95366 5.26636 5.41348 5.50764 5.74159 5.81788 5.95051 6.10713 6.43988 6.54904 6.76115 6.76914 7.47256 8.55022 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.004652 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.278724 B = 6018.044347 C = 6780.876818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.350 6.350 3 C 0.031 3.969 4 C -0.165 4.165 5 C -0.144 4.144 6 C -0.105 4.105 7 C -0.178 4.178 8 C 0.173 3.827 9 N -0.745 5.745 10 C 0.158 3.842 11 C 0.403 3.597 12 O -0.572 6.572 13 O -0.248 6.248 14 C -0.413 4.413 15 H 0.056 0.944 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.266 1.266 21 H -0.245 1.245 22 H 0.065 0.935 23 H 0.106 0.894 24 H 0.065 0.935 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.403 0.597 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.262 19.350 -0.023 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.265 6.265 3 C -0.017 4.017 4 C -0.184 4.184 5 C -0.164 4.164 6 C -0.124 4.124 7 C -0.201 4.201 8 C 0.071 3.929 9 N -0.380 5.380 10 C 0.032 3.968 11 C 0.250 3.750 12 O -0.468 6.468 13 O -0.156 6.156 14 C -0.489 4.489 15 H 0.073 0.927 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.806 3.194 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.168 1.168 22 H 0.084 0.916 23 H 0.124 0.876 24 H 0.084 0.916 25 H 0.165 0.835 26 H 0.166 0.834 27 H 0.168 0.832 28 H 0.160 0.840 29 H 0.239 0.761 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.982 18.771 -0.026 23.406 hybrid contribution -0.018 -1.009 0.017 1.010 sum -14.000 17.762 -0.009 22.616 Atomic orbital electron populations 1.23218 0.76754 1.04833 1.02144 1.86011 1.23262 1.27240 1.90017 1.18781 0.90458 0.85755 1.06726 1.21273 1.00535 0.91417 1.05193 1.21089 0.94892 0.97274 1.03157 1.21174 0.93946 0.98191 0.99084 1.20859 1.01022 0.89866 1.08377 1.17547 0.87661 0.87412 1.00275 1.44348 1.03250 1.07001 1.83374 1.20520 0.81268 0.88790 1.06193 1.24164 0.81384 0.93155 0.76271 1.90588 1.61002 1.44550 1.50636 1.83485 1.23193 1.30956 1.77997 1.20312 0.93166 0.80249 1.55165 0.92654 1.25642 0.98123 1.00821 0.93787 1.69703 1.16942 1.21260 1.47585 0.85028 0.76559 0.77853 0.79973 1.18252 1.19077 1.16786 0.91627 0.87571 0.91633 0.83547 0.83416 0.83218 0.83978 0.76059 0.86303 0.86220 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.35 -10.00 9.74 -93.69 -0.91 -10.92 16 3 C 0.03 0.84 6.70 22.59 0.15 0.99 16 4 C -0.17 -3.42 9.04 22.35 0.20 -3.22 16 5 C -0.14 -2.56 10.04 22.28 0.22 -2.33 16 6 C -0.11 -1.95 10.04 22.27 0.22 -1.73 16 7 C -0.18 -4.14 9.31 22.38 0.21 -3.93 16 8 C 0.17 5.03 6.67 38.22 0.25 5.29 16 9 N -0.74 -25.32 5.70 -342.69 -1.95 -27.28 16 10 C 0.16 5.18 5.51 85.63 0.47 5.65 16 11 C 0.40 19.09 7.97 71.24 0.57 19.66 16 12 O -0.57 -31.67 14.90 20.78 0.31 -31.36 16 13 O -0.25 -13.04 8.58 14.89 0.13 -12.91 16 14 C -0.41 -25.49 10.10 67.94 0.69 -24.80 16 15 H 0.06 3.91 7.09 -2.91 -0.02 3.89 16 16 C 0.02 0.96 5.49 84.88 0.47 1.42 16 17 N -0.92 -55.36 13.96 21.63 0.30 -55.06 16 18 Si 0.99 42.69 28.62 68.60 1.96 44.65 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.24 -9.94 7.11 99.48 0.71 -9.24 16 22 H 0.07 0.95 7.67 -2.39 -0.02 0.93 16 23 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 25 H 0.15 2.24 6.30 -2.91 -0.02 2.22 16 26 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 27 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 28 H 0.14 2.81 6.74 -2.91 -0.02 2.79 16 29 H 0.40 15.81 6.80 -92.71 -0.63 15.18 16 30 H 0.12 3.26 7.95 -2.39 -0.02 3.24 16 31 H 0.12 3.26 7.95 -2.39 -0.02 3.24 16 32 H 0.29 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -75.82 284.24 4.92 -70.90 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.52 Total: 23.41 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 4.57 Total: -1.44 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -1.65 Total: -82.34 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.48 Total: -55.18 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.96 Total: 44.65 kcal Total: -75.82 4.92 -70.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390547141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.099 kcal (2) G-P(sol) polarization free energy of solvation -75.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds