Wall clock time and date at job start Sun Mar 29 2020 23:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48501 * 109.47101 * 269.99905 * 3 2 1 5 5 H 1.48501 * 109.47179 * 29.99951 * 3 2 1 6 6 H 1.48501 * 109.46949 * 150.00287 * 3 2 1 7 7 C 1.40227 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00021 * 163.05627 * 7 2 1 9 9 C 1.41111 * 119.99382 * 343.05813 * 7 2 1 10 10 C 1.40885 * 120.10921 * 334.52933 * 9 7 2 11 11 C 1.36306 * 119.89590 * 180.30311 * 10 9 7 12 12 C 1.40016 * 120.10434 * 359.47343 * 11 10 9 13 13 C 1.47649 * 119.89637 * 180.25839 * 12 11 10 14 14 O 1.21582 * 120.00250 * 180.25054 * 13 12 11 15 15 N 1.34776 * 120.00001 * 0.24992 * 13 12 11 16 16 C 1.46493 * 119.99933 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47138 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47126 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.47184 * 179.97438 * 18 17 16 20 20 C 1.40010 * 120.21022 * 0.51122 * 12 11 10 21 21 C 1.36316 * 120.10397 * 359.76645 * 20 12 11 22 22 H 0.97005 * 119.99903 * 359.97438 * 1 2 3 23 23 H 1.08006 * 120.05061 * 0.02804 * 10 9 7 24 24 H 1.08002 * 119.95526 * 179.70093 * 11 10 9 25 25 H 0.97004 * 119.99495 * 359.97438 * 15 13 12 26 26 H 1.08997 * 109.47349 * 299.99694 * 16 15 13 27 27 H 1.09002 * 109.47839 * 59.99997 * 16 15 13 28 28 H 1.08997 * 109.46964 * 300.00191 * 17 16 15 29 29 H 1.09003 * 109.46877 * 59.99897 * 17 16 15 30 30 H 1.09004 * 109.47279 * 299.99811 * 18 17 16 31 31 H 1.09003 * 109.47121 * 60.00299 * 18 17 16 32 32 H 1.08000 * 119.94657 * 179.75594 * 20 12 11 33 33 H 1.08001 * 120.05236 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5380 1.4401 0.7000 7 6 2.0076 -1.2144 -0.0005 8 1 3.0524 -1.2346 -0.2731 9 6 1.3478 -2.4100 0.3551 10 6 0.2175 -2.3706 1.1951 11 6 -0.4127 -3.5287 1.5408 12 6 0.0549 -4.7552 1.0536 13 6 -0.6347 -6.0064 1.4265 14 8 -0.2276 -7.0729 1.0082 15 7 -1.7156 -5.9662 2.2305 16 6 -2.3995 -7.2076 2.6009 17 6 -3.5843 -6.8845 3.5135 18 6 -4.2989 -8.1810 3.8998 19 9 -5.3819 -7.8856 4.7348 20 6 1.1776 -4.7995 0.2182 21 6 1.8178 -3.6471 -0.1284 22 1 -0.4850 0.8401 0.0004 23 1 -0.1464 -1.4246 1.5681 24 1 -1.2764 -3.5000 2.1887 25 1 -2.0402 -5.1153 2.5645 26 1 -2.7591 -7.7068 1.7011 27 1 -1.7046 -7.8626 3.1265 28 1 -3.2243 -6.3856 4.4133 29 1 -4.2794 -6.2295 2.9883 30 1 -4.6590 -8.6795 2.9998 31 1 -3.6040 -8.8364 4.4250 32 1 1.5370 -5.7483 -0.1520 33 1 2.6840 -3.6823 -0.7725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533930955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:18 Heat of formation + Delta-G solvation = -91.258619 kcal Electronic energy + Delta-G solvation = -17161.004308 eV Core-core repulsion = 14099.732151 eV Total energy + Delta-G solvation = -3061.272158 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.79677 -39.14799 -37.20574 -35.30169 -33.89019 -32.06549 -30.07439 -29.46823 -26.52618 -25.00853 -22.21138 -21.69671 -20.89193 -19.59973 -17.55475 -16.95458 -16.64291 -16.11900 -15.58704 -15.21789 -14.86340 -14.66540 -14.05219 -13.76360 -13.42961 -13.22643 -12.75730 -12.16536 -11.97822 -11.82522 -11.80191 -11.41581 -11.36310 -11.25880 -11.00545 -10.89177 -10.65634 -10.08594 -9.58558 -9.37869 -9.02459 -8.67163 -7.74939 -7.56328 -7.05295 -4.62960 2.20093 2.89161 2.93239 2.99212 3.00984 3.62611 3.72199 3.83960 4.51885 4.55813 4.56260 4.68482 4.86693 5.20985 5.41025 5.54224 5.56210 5.87549 5.88194 6.01231 6.12551 6.29163 6.74355 6.80446 6.86853 7.02043 7.10645 7.41029 7.61983 7.75735 7.83367 8.04635 8.18452 8.37359 8.60644 8.72578 9.02418 9.86777 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.034916 B = 0.003983 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.725547 B = 7027.673038 C = 7738.744368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.443 4.443 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.177 4.177 11 C -0.063 4.063 12 C -0.285 4.285 13 C 0.572 3.428 14 O -0.576 6.576 15 N -0.743 5.743 16 C 0.126 3.874 17 C -0.167 4.167 18 C 0.066 3.934 19 F -0.220 7.220 20 C -0.022 4.022 21 C -0.239 4.239 22 H 0.287 0.713 23 H 0.120 0.880 24 H 0.089 0.911 25 H 0.398 0.602 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -4.977 5.615 9.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.197 4.197 11 C -0.082 4.082 12 C -0.290 4.290 13 C 0.367 3.633 14 O -0.458 6.458 15 N -0.397 5.397 16 C 0.001 3.999 17 C -0.205 4.205 18 C 0.010 3.990 19 F -0.201 7.201 20 C -0.041 4.041 21 C -0.258 4.258 22 H 0.098 0.902 23 H 0.138 0.862 24 H 0.107 0.893 25 H 0.234 0.766 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.698 -5.576 5.328 9.589 hybrid contribution -0.008 1.245 0.148 1.254 sum -5.706 -4.331 5.476 9.017 Atomic orbital electron populations 1.69737 1.07913 1.30068 1.31869 1.26100 0.94827 1.01894 0.91889 0.86212 0.80712 0.79809 0.79573 1.19147 1.19787 1.18117 1.19849 0.98117 0.91089 1.37976 0.89699 1.17791 0.90389 0.92186 0.87057 1.20974 0.99874 0.96851 1.01959 1.20472 0.97384 0.92611 0.97754 1.18891 1.04499 0.91046 1.14563 1.18600 0.78596 0.89656 0.76475 1.90631 1.66761 1.32162 1.56242 1.45870 1.31805 1.08986 1.53016 1.20999 0.92824 0.88082 0.97946 1.22376 0.98271 0.98441 1.01380 1.21863 0.85902 0.97538 0.93648 1.92767 1.57943 1.95007 1.74356 1.20364 0.92881 0.97129 0.93724 1.20729 1.04572 0.92720 1.07783 0.90217 0.86188 0.89328 0.76630 0.91752 0.91771 0.90072 0.90049 0.90408 0.90430 0.88087 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.35 10.95 55.56 0.61 -17.75 16 2 C 0.07 1.71 5.15 -17.31 -0.09 1.62 16 3 Si 0.91 17.09 29.59 -169.99 -5.03 12.06 16 4 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.44 -10.93 9.05 -37.75 -0.34 -11.27 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.13 3.26 5.57 -106.80 -0.59 2.67 16 10 C -0.18 -4.30 8.63 -39.28 -0.34 -4.64 16 11 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 12 C -0.29 -6.48 5.89 -104.73 -0.62 -7.09 16 13 C 0.57 12.03 7.76 -12.42 -0.10 11.93 16 14 O -0.58 -13.59 16.32 5.29 0.09 -13.50 16 15 N -0.74 -12.03 5.50 -61.31 -0.34 -12.37 16 16 C 0.13 1.62 5.67 -4.04 -0.02 1.59 16 17 C -0.17 -1.62 5.78 -26.73 -0.15 -1.77 16 18 C 0.07 0.56 7.55 37.16 0.28 0.84 16 19 F -0.22 -2.44 17.36 2.25 0.04 -2.40 16 20 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 21 C -0.24 -5.74 9.73 -39.27 -0.38 -6.12 16 22 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 23 H 0.12 2.94 6.18 -52.48 -0.32 2.62 16 24 H 0.09 1.63 6.37 -52.49 -0.33 1.29 16 25 H 0.40 5.74 6.47 -40.82 -0.26 5.48 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 33 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 290.60 15.07 4.38 4.38 Total: -1.00 -28.55 290.60 -7.20 -35.74 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -3.83 Total: 8.71 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -3.11 Total: -14.88 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.27 Total: -30.12 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.55 -7.20 -35.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533930955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.517 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds