Wall clock time and date at job start Sun Mar 29 2020 23:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48501 * 109.47101 * 269.99905 * 3 2 1 5 5 H 1.48501 * 109.47179 * 29.99951 * 3 2 1 6 6 H 1.48501 * 109.46949 * 150.00287 * 3 2 1 7 7 C 1.40227 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00021 * 163.05627 * 7 2 1 9 9 C 1.41111 * 119.99382 * 343.05813 * 7 2 1 10 10 C 1.40885 * 120.10921 * 334.52933 * 9 7 2 11 11 C 1.36306 * 119.89590 * 180.30311 * 10 9 7 12 12 C 1.40016 * 120.10434 * 359.47343 * 11 10 9 13 13 C 1.47649 * 119.89637 * 180.25839 * 12 11 10 14 14 O 1.21582 * 120.00250 * 180.25054 * 13 12 11 15 15 N 1.34776 * 120.00001 * 0.24992 * 13 12 11 16 16 C 1.46493 * 119.99933 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47138 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47126 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.47184 * 179.97438 * 18 17 16 20 20 C 1.40010 * 120.21022 * 0.51122 * 12 11 10 21 21 C 1.36316 * 120.10397 * 359.76645 * 20 12 11 22 22 H 0.97005 * 119.99903 * 359.97438 * 1 2 3 23 23 H 1.08006 * 120.05061 * 0.02804 * 10 9 7 24 24 H 1.08002 * 119.95526 * 179.70093 * 11 10 9 25 25 H 0.97004 * 119.99495 * 359.97438 * 15 13 12 26 26 H 1.08997 * 109.47349 * 299.99694 * 16 15 13 27 27 H 1.09002 * 109.47839 * 59.99997 * 16 15 13 28 28 H 1.08997 * 109.46964 * 300.00191 * 17 16 15 29 29 H 1.09003 * 109.46877 * 59.99897 * 17 16 15 30 30 H 1.09004 * 109.47279 * 299.99811 * 18 17 16 31 31 H 1.09003 * 109.47121 * 60.00299 * 18 17 16 32 32 H 1.08000 * 119.94657 * 179.75594 * 20 12 11 33 33 H 1.08001 * 120.05236 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5380 1.4401 0.7000 7 6 2.0076 -1.2144 -0.0005 8 1 3.0524 -1.2346 -0.2731 9 6 1.3478 -2.4100 0.3551 10 6 0.2175 -2.3706 1.1951 11 6 -0.4127 -3.5287 1.5408 12 6 0.0549 -4.7552 1.0536 13 6 -0.6347 -6.0064 1.4265 14 8 -0.2276 -7.0729 1.0082 15 7 -1.7156 -5.9662 2.2305 16 6 -2.3995 -7.2076 2.6009 17 6 -3.5843 -6.8845 3.5135 18 6 -4.2989 -8.1810 3.8998 19 9 -5.3819 -7.8856 4.7348 20 6 1.1776 -4.7995 0.2182 21 6 1.8178 -3.6471 -0.1284 22 1 -0.4850 0.8401 0.0004 23 1 -0.1464 -1.4246 1.5681 24 1 -1.2764 -3.5000 2.1887 25 1 -2.0402 -5.1153 2.5645 26 1 -2.7591 -7.7068 1.7011 27 1 -1.7046 -7.8626 3.1265 28 1 -3.2243 -6.3856 4.4133 29 1 -4.2794 -6.2295 2.9883 30 1 -4.6590 -8.6795 2.9998 31 1 -3.6040 -8.8364 4.4250 32 1 1.5370 -5.7483 -0.1520 33 1 2.6840 -3.6823 -0.7725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533930955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:18 Heat of formation + Delta-G solvation = -107.634068 kcal Electronic energy + Delta-G solvation = -17161.714401 eV Core-core repulsion = 14099.732151 eV Total energy + Delta-G solvation = -3061.982251 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.56925 -40.78070 -38.94718 -36.57527 -35.66590 -33.31988 -31.74505 -31.29145 -28.07362 -26.28258 -23.62109 -22.99628 -22.56463 -21.20954 -19.36652 -18.47831 -17.41395 -17.40198 -17.06946 -16.38310 -16.07891 -15.77494 -15.67021 -15.28041 -14.97289 -14.72227 -14.42322 -13.89475 -13.66720 -13.24137 -12.85075 -12.82891 -12.76965 -12.59947 -12.36605 -12.14916 -11.78206 -11.60042 -11.37356 -11.12185 -10.72984 -10.08606 -9.57604 -9.39867 -8.78890 -6.48716 0.43677 1.14826 1.39190 1.42973 1.55034 2.11652 2.18510 2.33690 2.78767 3.65756 3.68711 3.85163 3.88353 4.17779 4.31521 4.32964 4.39124 4.44556 4.57750 4.79388 4.92495 4.99117 5.03147 5.15219 5.16846 5.29884 5.54333 5.59706 5.81965 5.94020 5.99269 6.22881 6.53903 6.68851 6.77206 6.88747 7.42425 8.16364 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.034916 B = 0.003983 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.725547 B = 7027.673038 C = 7738.744368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.258 1.258 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.198 4.198 11 C -0.054 4.054 12 C -0.295 4.295 13 C 0.571 3.429 14 O -0.605 6.605 15 N -0.727 5.727 16 C 0.124 3.876 17 C -0.155 4.155 18 C 0.064 3.936 19 F -0.233 7.233 20 C -0.033 4.033 21 C -0.253 4.253 22 H 0.297 0.703 23 H 0.114 0.886 24 H 0.125 0.875 25 H 0.409 0.591 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 -4.591 6.493 10.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.502 4.502 8 H 0.103 0.897 9 C 0.099 3.901 10 C -0.217 4.217 11 C -0.073 4.073 12 C -0.299 4.299 13 C 0.365 3.635 14 O -0.490 6.490 15 N -0.379 5.379 16 C 0.000 4.000 17 C -0.193 4.193 18 C 0.009 3.991 19 F -0.214 7.214 20 C -0.052 4.052 21 C -0.273 4.273 22 H 0.108 0.892 23 H 0.132 0.868 24 H 0.143 0.857 25 H 0.246 0.754 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.661 -5.199 6.231 10.499 hybrid contribution 0.214 1.029 -0.115 1.057 sum -6.448 -4.170 6.116 9.816 Atomic orbital electron populations 1.69756 1.09209 1.31616 1.31698 1.26916 0.95561 1.04792 0.90812 0.85113 0.79185 0.75274 0.79709 1.18608 1.18589 1.18117 1.20120 0.98464 0.92146 1.39491 0.89679 1.18141 0.91304 0.92868 0.87826 1.21017 1.00479 0.97419 1.02789 1.20739 0.97812 0.91470 0.97244 1.19205 1.04337 0.92333 1.14071 1.18382 0.79603 0.88450 0.77100 1.90613 1.67938 1.32797 1.57657 1.45748 1.30197 1.10895 1.51100 1.21187 0.93663 0.86510 0.98636 1.22265 0.96987 0.99303 1.00784 1.21981 0.85716 0.97078 0.94326 1.92742 1.58709 1.95113 1.74875 1.20521 0.93503 0.97012 0.94206 1.20872 1.05164 0.92860 1.08372 0.89183 0.86828 0.85709 0.75437 0.91778 0.91621 0.89571 0.89725 0.88895 0.88809 0.87872 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.88 10.95 21.87 0.24 -37.64 16 2 C 0.04 1.75 5.15 85.35 0.44 2.19 16 3 Si 0.99 34.46 29.59 68.60 2.03 36.49 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 5 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 6 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 7 C -0.47 -23.87 9.05 23.46 0.21 -23.65 16 8 H 0.09 4.10 7.90 -2.91 -0.02 4.08 16 9 C 0.10 5.26 5.57 -21.28 -0.12 5.14 16 10 C -0.20 -9.66 8.63 22.47 0.19 -9.47 16 11 C -0.05 -2.31 9.47 22.25 0.21 -2.10 16 12 C -0.30 -13.27 5.89 -19.93 -0.12 -13.39 16 13 C 0.57 23.42 7.76 86.73 0.67 24.09 16 14 O -0.61 -28.22 16.32 -3.97 -0.06 -28.28 16 15 N -0.73 -22.01 5.50 -466.16 -2.57 -24.57 16 16 C 0.12 2.88 5.67 86.38 0.49 3.37 16 17 C -0.16 -2.58 5.78 30.60 0.18 -2.40 16 18 C 0.06 0.92 7.55 71.98 0.54 1.46 16 19 F -0.23 -4.64 17.36 44.97 0.78 -3.86 16 20 C -0.03 -1.58 9.52 22.25 0.21 -1.37 16 21 C -0.25 -12.51 9.73 22.47 0.22 -12.29 16 22 H 0.30 12.48 8.29 -92.70 -0.77 11.71 16 23 H 0.11 5.62 6.18 -2.91 -0.02 5.61 16 24 H 0.13 4.31 6.37 -2.91 -0.02 4.29 16 25 H 0.41 10.66 6.47 -92.71 -0.60 10.06 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 4.77 7.63 -2.91 -0.02 4.75 16 33 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -61.44 290.60 4.08 -57.36 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.53 Total: 28.92 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 3.14 Total: -28.42 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -2.33 Total: -62.21 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.06 Total: -28.28 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.78 Total: -3.86 kcal Atomic # 14 Polarization: 34.46 SS G_CDS: 2.03 Total: 36.49 kcal Total: -61.44 4.08 -57.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533930955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.277 kcal (2) G-P(sol) polarization free energy of solvation -61.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds