Wall clock time and date at job start Mon Mar 30 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86794 * 120.00060 * 2 1 4 4 H 1.48499 * 109.47129 * 274.98736 * 3 2 1 5 5 H 1.48505 * 109.47162 * 34.98993 * 3 2 1 6 6 H 1.48504 * 109.47164 * 154.98579 * 3 2 1 7 7 C 1.40126 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99822 * 186.14592 * 7 2 1 9 9 C 1.46113 * 120.00497 * 6.15499 * 7 2 1 10 10 O 1.21760 * 119.99868 * 353.92842 * 9 7 2 11 11 N 1.34773 * 120.00227 * 173.93041 * 9 7 2 12 12 C 1.39678 * 120.00192 * 179.97438 * 11 9 7 13 13 C 1.40513 * 125.98636 * 0.27332 * 12 11 9 14 14 C 1.35170 * 107.87804 * 180.16321 * 13 12 11 15 15 C 1.50700 * 126.05170 * 179.84444 * 14 13 12 16 16 H 1.08998 * 110.42003 * 327.41066 * 15 14 13 17 17 C 1.54482 * 110.37151 * 89.71926 * 15 14 13 18 18 C 1.54505 * 104.06245 * 142.81056 * 17 15 14 19 19 C 1.54471 * 104.18697 * 359.93064 * 18 17 15 20 20 O 1.44422 * 110.37266 * 205.09965 * 15 14 13 21 21 N 1.35068 * 107.90103 * 359.58678 * 14 13 12 22 22 H 0.97001 * 125.97026 * 180.28227 * 21 14 13 23 23 N 1.31411 * 125.98999 * 179.97438 * 12 11 9 24 24 H 0.96999 * 120.00177 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00189 * 359.97438 * 11 9 7 26 26 H 1.08002 * 126.06552 * 0.03365 * 13 12 11 27 27 H 1.09000 * 110.51176 * 24.16672 * 17 15 14 28 28 H 1.08997 * 110.62912 * 261.51340 * 17 15 14 29 29 H 1.08998 * 110.51283 * 118.65045 * 18 17 15 30 30 H 1.09004 * 110.51315 * 241.21593 * 18 17 15 31 31 H 1.08998 * 110.37360 * 94.92084 * 19 18 17 32 32 H 1.09002 * 110.38029 * 217.26009 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3825 2.1072 -1.3948 5 1 1.4945 2.6199 0.8029 6 1 3.5867 1.4120 0.5920 7 6 2.0069 -1.2136 -0.0005 8 1 3.0823 -1.2164 0.0996 9 6 1.2827 -2.4753 -0.1368 10 8 0.0651 -2.4811 -0.1386 11 7 1.9623 -3.6325 -0.2603 12 6 1.2699 -4.8387 -0.3900 13 6 -0.1268 -4.9906 -0.4127 14 6 -0.3987 -6.3077 -0.5483 15 6 -1.7707 -6.9277 -0.6152 16 1 -2.4744 -6.3607 -0.0057 17 6 -2.2596 -6.9950 -2.0790 18 6 -3.0227 -8.3361 -2.1587 19 6 -2.9048 -8.9239 -0.7351 20 8 -1.7224 -8.3036 -0.1787 21 7 0.7767 -6.9692 -0.6190 22 1 0.8859 -7.9275 -0.7221 23 7 1.8106 -6.0296 -0.5178 24 1 -0.4850 0.8400 0.0004 25 1 2.9323 -3.6278 -0.2592 26 1 -0.8541 -4.1962 -0.3335 27 1 -1.4125 -6.9962 -2.7650 28 1 -2.9272 -6.1620 -2.2995 29 1 -4.0681 -8.1660 -2.4164 30 1 -2.5543 -8.9994 -2.8859 31 1 -3.7827 -8.6646 -0.1435 32 1 -2.7828 -10.0062 -0.7803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597841501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:33 Heat of formation + Delta-G solvation = -9.428868 kcal Electronic energy + Delta-G solvation = -17934.326403 eV Core-core repulsion = 14896.522611 eV Total energy + Delta-G solvation = -3037.803792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.72663 -39.11995 -37.33491 -33.47441 -32.47771 -32.24189 -30.94158 -29.50518 -27.57716 -26.37055 -23.29958 -21.62676 -21.44429 -20.04912 -18.97117 -17.48954 -17.19701 -16.38844 -15.59986 -15.29013 -15.14202 -14.47544 -14.26075 -14.03948 -13.83299 -12.85046 -12.72347 -12.50574 -12.22763 -11.86661 -11.55561 -11.44147 -11.31265 -11.12722 -10.80792 -10.63051 -10.31656 -10.12742 -9.89060 -9.74197 -8.92684 -8.01118 -7.71996 -7.25136 -6.35181 -4.80341 2.40268 3.08546 3.15921 3.19671 3.34014 3.54183 3.81747 4.02555 4.40568 4.52522 4.57963 4.73464 4.77890 5.05329 5.14235 5.37743 5.50538 5.57510 5.67618 5.68705 5.85018 5.90896 6.01931 6.41402 6.59549 6.74267 7.23677 7.33736 7.58890 7.93706 8.09683 8.12337 8.45503 8.86754 9.31862 10.39445 10.57376 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.044276 B = 0.004655 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.244397 B = 6013.355265 C = 6455.863241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.088 3.912 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.551 3.449 10 O -0.555 6.555 11 N -0.657 5.657 12 C 0.332 3.668 13 C -0.248 4.248 14 C 0.078 3.922 15 C 0.145 3.855 16 H 0.096 0.904 17 C -0.145 4.145 18 C -0.155 4.155 19 C 0.045 3.955 20 O -0.375 6.375 21 N -0.474 5.474 22 H 0.433 0.567 23 N -0.356 5.356 24 H 0.272 0.728 25 H 0.397 0.603 26 H 0.175 0.825 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -12.465 -3.317 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.133 4.133 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.093 0.907 9 C 0.357 3.643 10 O -0.436 6.436 11 N -0.307 5.307 12 C 0.075 3.925 13 C -0.279 4.279 14 C -0.050 4.050 15 C 0.085 3.915 16 H 0.113 0.887 17 C -0.183 4.183 18 C -0.193 4.193 19 C -0.032 4.032 20 O -0.294 6.294 21 N -0.184 5.184 22 H 0.276 0.724 23 N -0.191 5.191 24 H 0.083 0.917 25 H 0.231 0.769 26 H 0.192 0.808 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.760 -12.958 -3.228 14.177 hybrid contribution 0.133 0.757 -0.160 0.785 sum -4.627 -12.201 -3.387 13.482 Atomic orbital electron populations 1.69987 1.07178 1.27816 1.33744 1.25722 0.94696 1.00480 0.92448 0.86241 0.80234 0.80856 0.78822 1.19639 1.20302 1.18688 1.20780 0.94444 0.88771 1.53173 0.90732 1.18381 0.87367 0.81463 0.77126 1.90525 1.13686 1.85079 1.54293 1.43551 1.09511 1.02663 1.74942 1.19466 0.91325 0.86945 0.94723 1.21733 0.96010 0.94790 1.15382 1.20563 0.87631 0.92779 1.04016 1.21456 0.91858 0.83125 0.95019 0.88652 1.22977 1.00977 0.97952 0.96422 1.22961 1.01394 0.97009 0.97948 1.23452 0.88557 0.98401 0.92767 1.89148 1.43875 1.22166 1.74231 1.45555 1.02332 1.08556 1.61946 0.72357 1.77366 1.09990 0.96895 1.34804 0.91729 0.76941 0.80751 0.90338 0.89460 0.90297 0.90706 0.91906 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.67 11.85 55.55 0.66 -21.01 16 2 C 0.09 2.34 5.50 -17.35 -0.10 2.25 16 3 Si 0.91 19.36 29.56 -169.99 -5.03 14.33 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.54 -14.60 9.53 -35.72 -0.34 -14.94 16 8 H 0.07 1.85 7.86 -52.48 -0.41 1.44 16 9 C 0.55 15.43 7.70 -13.10 -0.10 15.32 16 10 O -0.56 -17.01 12.15 5.14 0.06 -16.95 16 11 N -0.66 -15.85 5.43 -12.52 -0.07 -15.91 16 12 C 0.33 7.76 8.10 -154.67 -1.25 6.50 16 13 C -0.25 -5.55 9.51 -39.82 -0.38 -5.93 16 14 C 0.08 1.43 6.10 -82.26 -0.50 0.93 16 15 C 0.14 2.05 3.77 -27.10 -0.10 1.95 16 16 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 17 C -0.14 -1.69 6.62 -25.16 -0.17 -1.85 16 18 C -0.16 -1.35 7.08 -25.17 -0.18 -1.53 16 19 C 0.04 0.42 7.65 37.93 0.29 0.71 16 20 O -0.38 -5.00 11.20 -35.23 -0.39 -5.39 16 21 N -0.47 -8.49 7.25 33.47 0.24 -8.25 16 22 H 0.43 6.40 8.90 -182.61 -1.63 4.78 16 23 N -0.36 -7.55 12.73 31.39 0.40 -7.15 16 24 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 25 H 0.40 8.45 8.80 -40.82 -0.36 8.09 16 26 H 0.18 4.32 5.90 -52.49 -0.31 4.01 16 27 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 279.50 15.07 4.21 4.21 Total: -1.00 -33.12 279.50 -7.52 -40.65 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -4.79 Total: 12.07 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -2.83 Total: 3.40 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 1.23 Total: -52.32 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.33 Total: -22.34 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.12 -7.52 -40.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597841501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.220 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds