Wall clock time and date at job start Sun Mar 29 2020 23:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35892 * 116.99945 * 2 1 4 4 C 1.38736 * 120.05395 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94254 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05684 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94576 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 20.00257 * 7 6 5 9 9 N 1.46500 * 109.47209 * 140.00235 * 7 6 5 10 10 C 1.36933 * 119.99983 * 204.99924 * 9 7 6 11 11 H 1.08002 * 120.00189 * 0.02562 * 10 9 7 12 12 C 1.38812 * 120.00422 * 179.97438 * 10 9 7 13 13 N 1.31621 * 120.00472 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99616 * 359.97438 * 12 10 9 15 15 H 1.48509 * 109.46627 * 90.00015 * 14 12 10 16 16 H 1.48499 * 109.47196 * 209.99956 * 14 12 10 17 17 H 1.48496 * 109.47418 * 330.00510 * 14 12 10 18 18 C 1.50703 * 109.47064 * 260.00293 * 7 6 5 19 19 O 1.20824 * 119.99775 * 239.99985 * 18 7 6 20 20 O 1.34231 * 120.00026 * 59.99961 * 18 7 6 21 21 C 1.38270 * 120.11274 * 0.27911 * 6 5 4 22 22 C 1.38145 * 120.05449 * 359.44888 * 21 6 5 23 23 H 1.08995 * 109.47142 * 299.99938 * 1 2 3 24 24 H 1.08997 * 109.47301 * 60.00396 * 1 2 3 25 25 H 1.09005 * 109.46867 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.03254 * 359.95353 * 4 3 2 27 27 H 1.08002 * 119.97131 * 180.02562 * 5 4 3 28 28 H 0.96997 * 120.00274 * 24.99818 * 9 7 6 29 29 H 0.97001 * 119.99778 * 180.02562 * 13 12 10 30 30 H 0.96696 * 116.99892 * 180.02562 * 20 18 7 31 31 H 1.08000 * 119.97188 * 179.70466 * 21 6 5 32 32 H 1.07996 * 120.03272 * 180.27269 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0114 4.9035 -0.3546 9 7 3.2647 5.9333 -0.8909 10 6 3.9191 6.9928 -1.4604 11 1 4.9671 7.1538 -1.2552 12 6 3.2358 7.8594 -2.3024 13 7 3.8649 8.8775 -2.8502 14 14 1.4235 7.5798 -2.6591 15 1 0.6039 8.3051 -1.6554 16 1 1.1029 8.0849 -4.0183 17 1 1.1232 6.1273 -2.5871 18 6 3.9949 5.5790 1.3961 19 8 3.4540 6.6344 1.6274 20 8 4.6035 4.9058 2.3851 21 6 1.9211 3.6047 0.0042 22 6 1.2915 2.3751 -0.0009 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 4.0209 0.3799 -0.0002 27 1 5.1345 2.5749 -0.0019 28 1 2.3235 5.7886 -1.0756 29 1 3.3872 9.4833 -3.4383 30 1 4.5825 5.3049 3.2656 31 1 1.3343 4.5114 0.0086 32 1 0.2129 2.3201 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737965477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:22 Heat of formation + Delta-G solvation = -80.336673 kcal Electronic energy + Delta-G solvation = -18179.020712 eV Core-core repulsion = 15105.849376 eV Total energy + Delta-G solvation = -3073.171336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.24651 -39.42485 -37.58823 -35.58341 -34.59779 -31.99548 -30.98820 -29.98386 -27.71981 -26.23294 -23.34793 -22.48666 -21.77343 -20.07056 -18.35652 -17.85210 -17.38110 -16.13959 -16.04203 -15.78159 -15.38081 -14.80525 -14.51614 -14.25638 -13.68178 -13.35954 -13.24265 -12.75928 -12.61402 -12.28377 -12.07971 -11.66088 -11.21603 -11.00074 -10.95916 -10.74137 -10.73722 -10.26588 -10.01162 -9.70334 -9.13009 -8.88114 -8.01005 -7.53712 -5.88946 -3.27442 1.45901 1.49101 2.99070 3.23312 3.30288 3.34537 3.39887 3.65337 3.94639 4.49646 4.81301 4.92821 5.01603 5.03895 5.05469 5.21843 5.30929 5.46013 5.50623 5.58469 5.74134 5.92728 6.09830 6.19927 6.32635 6.44987 6.78261 6.81693 7.14130 7.39217 7.77528 8.26187 8.65329 9.00680 9.72723 9.86413 11.27889 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.007221 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.108729 B = 3876.809551 C = 4690.663183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.151 4.151 5 C -0.057 4.057 6 C -0.109 4.109 7 C 0.236 3.764 8 H 0.106 0.894 9 N -0.706 5.706 10 C -0.255 4.255 11 H 0.095 0.905 12 C 0.019 3.981 13 N -0.921 5.921 14 Si 0.880 3.120 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.439 3.561 19 O -0.498 6.498 20 O -0.530 6.530 21 C -0.069 4.069 22 C -0.206 4.206 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.369 0.631 29 H 0.263 0.737 30 H 0.389 0.611 31 H 0.124 0.876 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 -17.194 7.260 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.076 4.076 6 C -0.110 4.110 7 C 0.121 3.879 8 H 0.123 0.877 9 N -0.347 5.347 10 C -0.384 4.384 11 H 0.112 0.888 12 C -0.179 4.179 13 N -0.567 5.567 14 Si 0.709 3.291 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.200 1.200 18 C 0.276 3.724 19 O -0.383 6.383 20 O -0.341 6.341 21 C -0.087 4.087 22 C -0.225 4.225 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.153 0.847 28 H 0.204 0.796 29 H 0.073 0.927 30 H 0.246 0.754 31 H 0.141 0.859 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.149 -17.027 6.790 18.795 hybrid contribution -1.670 0.588 0.384 1.812 sum -5.819 -16.439 7.175 18.857 Atomic orbital electron populations 1.23022 0.78692 1.03600 1.01443 1.86035 1.21169 1.27189 1.89017 1.19015 0.92435 0.83861 0.97202 1.20349 0.91153 0.98465 1.06973 1.20814 1.00088 0.90418 0.96286 1.19723 0.93606 0.94355 1.03304 1.18666 0.98462 0.86509 0.84248 0.87687 1.42737 1.10050 1.31121 1.50773 1.19006 0.95929 1.01765 1.21720 0.88755 1.24631 0.97637 0.96573 0.99015 1.69693 1.35878 1.16320 1.34788 0.86623 0.86701 0.77826 0.77904 1.20625 1.21254 1.20042 1.26413 0.74100 0.83307 0.88593 1.90668 1.41828 1.22685 1.83075 1.84687 1.73270 1.54900 1.21221 1.20825 0.94301 0.97206 0.96413 1.21142 0.99850 0.92159 1.09318 0.92745 0.92646 0.88485 0.85160 0.84687 0.79581 0.92695 0.75415 0.85850 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.96 10.50 -19.40 -0.20 -4.16 16 3 C 0.12 1.64 6.69 -39.21 -0.26 1.38 16 4 C -0.15 -2.00 9.99 -39.43 -0.39 -2.39 16 5 C -0.06 -0.81 9.66 -39.61 -0.38 -1.19 16 6 C -0.11 -1.82 4.88 -104.60 -0.51 -2.33 16 7 C 0.24 4.62 3.00 -70.23 -0.21 4.41 16 8 H 0.11 1.95 7.94 -51.93 -0.41 1.54 16 9 N -0.71 -16.85 4.40 -55.68 -0.24 -17.10 16 10 C -0.26 -7.19 10.29 -15.06 -0.16 -7.34 16 11 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 12 C 0.02 0.55 5.50 -17.43 -0.10 0.45 16 13 N -0.92 -28.70 13.97 55.49 0.78 -27.92 16 14 Si 0.88 22.03 27.73 -169.99 -4.71 17.31 16 15 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.27 -6.38 6.52 56.52 0.37 -6.01 16 18 C 0.44 8.69 7.64 36.01 0.28 8.97 16 19 O -0.50 -11.89 17.10 -18.75 -0.32 -12.21 16 20 O -0.53 -8.17 13.34 -39.26 -0.52 -8.70 16 21 C -0.07 -1.13 9.04 -39.60 -0.36 -1.49 16 22 C -0.21 -2.90 9.04 -39.43 -0.36 -3.25 16 23 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 24 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 27 H 0.14 1.59 8.03 -52.49 -0.42 1.17 16 28 H 0.37 8.65 3.94 -40.82 -0.16 8.49 16 29 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 30 H 0.39 4.40 9.10 45.56 0.41 4.82 16 31 H 0.12 2.11 6.93 -52.49 -0.36 1.75 16 32 H 0.13 1.47 6.30 -52.49 -0.33 1.13 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -34.59 283.44 -4.92 -39.51 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -2.51 Total: 10.54 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.46 Total: -1.55 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.53 Total: -45.02 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.05 Total: -25.07 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.59 -4.92 -39.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737965477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.822 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds