Wall clock time and date at job start Sun Mar 29 2020 23:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 O 1.42894 * 109.47532 * 119.99996 * 2 1 3 5 5 C 1.35670 * 116.99969 * 89.99659 * 4 2 1 6 6 C 1.39305 * 119.61268 * 180.02562 * 5 4 2 7 7 C 1.38352 * 119.32085 * 180.02562 * 6 5 4 8 8 C 1.38762 * 118.56541 * 359.73730 * 7 6 5 9 9 C 1.39222 * 119.17961 * 0.50750 * 8 7 6 10 10 C 1.47953 * 119.69664 * 179.75395 * 9 8 7 11 11 O 1.21477 * 120.00117 * 359.72770 * 10 9 8 12 12 O 1.34698 * 120.00120 * 179.72820 * 10 9 8 13 13 C 1.34824 * 116.99996 * 180.02562 * 12 10 9 14 14 H 1.07999 * 120.00027 * 0.02562 * 13 12 10 15 15 C 1.38848 * 119.99763 * 179.97438 * 13 12 10 16 16 N 1.31384 * 120.00461 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99930 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47118 * 90.00058 * 17 15 13 19 19 H 1.48499 * 109.47293 * 210.00062 * 17 15 13 20 20 H 1.48496 * 109.47209 * 330.00100 * 17 15 13 21 21 N 1.31895 * 119.61226 * 0.02562 * 5 4 2 22 22 H 1.09002 * 109.46861 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47065 * 299.99389 * 1 2 3 24 24 H 1.08999 * 109.47173 * 60.00076 * 1 2 3 25 25 H 1.09005 * 109.46921 * 240.00090 * 2 1 3 26 26 H 1.09004 * 109.47266 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47098 * 299.99969 * 3 2 1 28 28 H 1.08997 * 109.47091 * 60.00018 * 3 2 1 29 29 H 1.08002 * 120.34209 * 359.97438 * 6 5 4 30 30 H 1.07995 * 120.71509 * 180.02562 * 7 6 5 31 31 H 1.07996 * 120.40818 * 180.28456 * 8 7 6 32 32 H 0.97000 * 120.00862 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2117 -2.0108 1.0652 6 6 2.6752 -2.7219 2.1698 7 6 2.8829 -4.0853 2.0594 8 6 2.6150 -4.7011 0.8451 9 6 2.1586 -3.9304 -0.2207 10 6 1.8746 -4.5743 -1.5222 11 8 2.0447 -5.7693 -1.6585 12 8 1.4276 -3.8354 -2.5558 13 6 1.1879 -4.4839 -3.7133 14 1 1.3552 -5.5488 -3.7804 15 6 0.7249 -3.7829 -4.8188 16 7 0.5209 -2.4876 -4.7372 17 14 0.3935 -4.6812 -6.4228 18 1 -1.0142 -5.1537 -6.4438 19 1 0.6230 -3.7586 -7.5635 20 1 1.3082 -5.8456 -6.5361 21 7 1.9701 -2.6223 -0.0782 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.8711 -2.2140 3.1026 30 1 3.2413 -4.6586 2.9015 31 1 2.7623 -5.7644 0.7272 32 1 0.1978 -1.9977 -5.5096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755001827.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:37 Heat of formation + Delta-G solvation = -82.333723 kcal Electronic energy + Delta-G solvation = -18154.937082 eV Core-core repulsion = 15081.679147 eV Total energy + Delta-G solvation = -3073.257935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42132 -38.90535 -37.70847 -35.18587 -33.00194 -32.46323 -32.08433 -29.92514 -27.03108 -25.94575 -24.23512 -23.18937 -20.87978 -20.66123 -18.02169 -17.80993 -17.13796 -15.77969 -15.51533 -15.43892 -14.80955 -14.54831 -14.43380 -14.11464 -13.66894 -13.21187 -12.78561 -12.60045 -12.12041 -12.11766 -11.87831 -11.66477 -11.59462 -11.26071 -10.68469 -10.53583 -10.48186 -10.40205 -9.91464 -9.65424 -9.57397 -8.96398 -8.65928 -8.23639 -6.51727 -4.12419 1.02837 1.56853 3.07902 3.14444 3.20745 3.26610 3.42671 3.81074 4.26503 4.33831 4.72642 5.10146 5.10576 5.15509 5.22988 5.27529 5.41530 5.52327 5.67310 5.76890 5.91436 6.00677 6.08330 6.14996 6.30411 6.33341 6.49657 6.62834 6.78953 7.29449 7.54821 7.83848 8.12282 8.63423 8.95118 9.79271 10.64509 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.007243 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.271190 B = 3864.752739 C = 5120.332076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.077 3.923 3 C -0.146 4.146 4 O -0.306 6.306 5 C 0.318 3.682 6 C -0.188 4.188 7 C -0.051 4.051 8 C -0.165 4.165 9 C 0.173 3.827 10 C 0.431 3.569 11 O -0.550 6.550 12 O -0.178 6.178 13 C -0.375 4.375 14 H 0.100 0.900 15 C 0.043 3.957 16 N -0.845 5.845 17 Si 0.946 3.054 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.264 1.264 21 N -0.495 5.495 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 4.546 10.604 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 C -0.203 4.203 4 O -0.214 6.214 5 C 0.137 3.863 6 C -0.209 4.209 7 C -0.076 4.076 8 C -0.186 4.186 9 C 0.037 3.963 10 C 0.278 3.722 11 O -0.449 6.449 12 O -0.083 6.083 13 C -0.451 4.451 14 H 0.117 0.883 15 C -0.163 4.163 16 N -0.480 5.480 17 Si 0.770 3.230 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.189 1.189 21 N -0.221 5.221 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.016 5.121 9.881 11.310 hybrid contribution 0.011 -0.804 -0.250 0.842 sum 2.027 4.317 9.631 10.747 Atomic orbital electron populations 1.22150 0.94829 1.03167 1.01946 1.22400 0.94594 0.92527 0.88363 1.21875 1.01684 0.94161 1.02609 1.86229 1.80330 1.15801 1.39067 1.19825 0.91904 0.85019 0.89560 1.21152 1.06588 0.94437 0.98768 1.21294 0.95675 0.93379 0.97249 1.21893 1.02078 1.02149 0.92495 1.20174 0.95407 0.87730 0.93008 1.20282 0.81957 0.85204 0.84757 1.90642 1.55094 1.15595 1.83520 1.83989 1.66235 1.39596 1.18433 1.21447 1.43975 0.94489 0.85172 0.88288 1.25447 0.95931 0.95770 0.99177 1.69997 1.40002 1.06749 1.31224 0.85631 0.79251 0.78936 0.79176 1.19691 1.20167 1.18868 1.67419 1.19107 1.11492 1.24058 0.91784 0.92735 0.90931 0.88227 0.92092 0.90468 0.92114 0.84271 0.83840 0.83466 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.53 37.16 0.35 -2.19 16 2 C 0.08 1.25 3.11 -26.73 -0.08 1.17 16 3 C -0.15 -1.83 9.56 37.16 0.36 -1.48 16 4 O -0.31 -5.12 9.76 -18.71 -0.18 -5.30 16 5 C 0.32 5.69 7.46 -17.13 -0.13 5.56 16 6 C -0.19 -2.70 10.05 -39.14 -0.39 -3.10 16 7 C -0.05 -0.69 10.16 -39.35 -0.40 -1.09 16 8 C -0.17 -2.88 9.63 -39.02 -0.38 -3.25 16 9 C 0.17 3.78 6.74 -83.05 -0.56 3.22 16 10 C 0.43 11.42 7.88 34.71 0.27 11.69 16 11 O -0.55 -15.14 15.56 -19.25 -0.30 -15.44 16 12 O -0.18 -5.30 9.55 -21.46 -0.21 -5.50 16 13 C -0.37 -11.12 9.65 30.96 0.30 -10.82 16 14 H 0.10 2.92 6.86 -52.49 -0.36 2.56 16 15 C 0.04 1.20 5.50 -17.52 -0.10 1.11 16 16 N -0.84 -24.36 13.67 55.49 0.76 -23.60 16 17 Si 0.95 20.91 29.55 -169.99 -5.02 15.89 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 21 N -0.49 -10.56 8.40 -9.89 -0.08 -10.65 16 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.10 1.94 6.98 -51.93 -0.36 1.58 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.15 2.43 7.63 -52.49 -0.40 2.03 16 32 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 291.82 15.07 4.40 4.40 Total: -1.00 -32.86 291.82 -5.03 -37.89 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -3.64 Total: 1.48 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.75 Total: 0.83 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.68 Total: -34.25 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.69 Total: -26.24 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.86 -5.03 -37.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755001827.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.440 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds