Wall clock time and date at job start Sun Mar 29 2020 23:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35985 * 116.99776 * 2 1 4 4 C 1.38715 * 120.00180 * 359.97438 * 3 2 1 5 5 C 1.38115 * 119.99935 * 179.97438 * 4 3 2 6 6 C 1.38711 * 120.00055 * 0.02562 * 5 4 3 7 7 O 1.35985 * 119.99810 * 179.97438 * 6 5 4 8 8 C 1.38672 * 119.99983 * 0.02562 * 6 5 4 9 9 C 1.50703 * 119.99968 * 179.97438 * 8 6 5 10 10 N 1.46506 * 109.47289 * 285.00141 * 9 8 6 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 8 12 12 O 1.21682 * 120.00244 * 0.02562 * 11 10 9 13 13 C 1.46376 * 119.99597 * 180.02562 * 11 10 9 14 14 H 1.07995 * 120.00074 * 359.97438 * 13 11 10 15 15 C 1.40050 * 119.99840 * 179.97438 * 13 11 10 16 16 N 1.30681 * 119.99902 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00281 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46848 * 60.00282 * 17 15 13 19 19 H 1.48503 * 109.47237 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47035 * 300.00378 * 17 15 13 21 21 C 1.38148 * 120.00475 * 0.23416 * 8 6 5 22 22 H 1.08992 * 109.47622 * 300.00384 * 1 2 3 23 23 H 1.09004 * 109.47035 * 59.99986 * 1 2 3 24 24 H 1.09004 * 109.47288 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00308 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.99722 * 179.97438 * 5 4 3 27 27 H 0.96693 * 114.00076 * 270.01856 * 7 6 5 28 28 H 1.09001 * 109.47438 * 164.99922 * 9 8 6 29 29 H 1.09004 * 109.47113 * 45.00178 * 9 8 6 30 30 H 0.97001 * 119.99251 * 0.02562 * 10 9 8 31 31 H 0.96999 * 120.00129 * 179.97438 * 16 15 13 32 32 H 1.08001 * 120.00443 * 179.72247 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 0.0000 6 6 3.3030 3.6782 0.0005 7 8 3.9203 4.8899 0.0005 8 6 4.0583 2.5152 0.0000 9 6 5.5632 2.5941 0.0000 10 7 6.0322 2.9773 -1.3340 11 6 7.3521 3.1109 -1.5717 12 8 8.1543 2.9129 -0.6785 13 6 7.8205 3.4944 -2.9044 14 1 7.1085 3.6697 -3.6973 15 6 9.1920 3.6337 -3.1514 16 7 10.0535 3.4210 -2.1921 17 14 9.7899 4.1223 -4.8523 18 1 9.2239 5.4466 -5.2145 19 1 11.2729 4.2007 -4.8521 20 1 9.3484 3.1076 -5.8426 21 6 3.4312 1.2843 -0.0060 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2122 2.3185 -0.0014 26 1 1.3295 4.5114 -0.0008 27 1 4.0990 5.2403 -0.8828 28 1 5.9781 1.6218 0.2655 29 1 5.8881 3.3385 0.7270 30 1 5.3926 3.1356 -2.0459 31 1 11.0034 3.5172 -2.3631 32 1 4.0194 0.3785 -0.0109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773403896.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:29 Heat of formation + Delta-G solvation = -95.259121 kcal Electronic energy + Delta-G solvation = -17720.085247 eV Core-core repulsion = 14646.266825 eV Total energy + Delta-G solvation = -3073.818422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34338 -38.58410 -37.07589 -35.74383 -33.58637 -32.34840 -30.90585 -29.37687 -27.19692 -26.73104 -24.75045 -22.56690 -21.16413 -19.69917 -18.09053 -17.97141 -17.00142 -16.57836 -15.86802 -15.33293 -15.21229 -14.50650 -14.37782 -14.08051 -13.79407 -13.28759 -12.97213 -12.66720 -12.39652 -12.26103 -11.74397 -11.45499 -11.33485 -11.16906 -10.90932 -10.83761 -10.45808 -10.25853 -10.15987 -8.96235 -8.83167 -8.02826 -7.57834 -7.49873 -6.16935 -4.63180 1.24305 1.34544 3.16300 3.16804 3.21696 3.23538 3.59345 4.12846 4.43190 4.60702 4.71258 4.78639 4.94905 4.95025 5.09038 5.18227 5.26303 5.44437 5.56709 5.79221 5.94842 6.06680 6.24093 6.28613 6.45805 6.62011 6.78091 7.28368 7.44168 7.87920 7.92405 8.07568 8.32771 9.03360 9.53612 10.61406 10.79721 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.034011 B = 0.004585 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.068896 B = 6104.973450 C = 6260.785851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.113 3.887 4 C -0.196 4.196 5 C -0.111 4.111 6 C 0.085 3.915 7 O -0.490 6.490 8 C -0.074 4.074 9 C 0.174 3.826 10 N -0.761 5.761 11 C 0.556 3.444 12 O -0.579 6.579 13 C -0.545 4.545 14 H 0.067 0.933 15 C 0.088 3.912 16 N -0.768 5.768 17 Si 0.908 3.092 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.121 4.121 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.390 0.610 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.378 0.622 31 H 0.269 0.731 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.763 -2.175 1.285 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.068 3.932 4 C -0.215 4.215 5 C -0.129 4.129 6 C 0.040 3.960 7 O -0.300 6.300 8 C -0.075 4.075 9 C 0.049 3.951 10 N -0.417 5.417 11 C 0.360 3.640 12 O -0.461 6.461 13 C -0.582 4.582 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.396 5.396 17 Si 0.733 3.267 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.140 4.140 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.116 0.884 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.246 0.754 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.209 0.791 31 H 0.080 0.920 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.885 -2.582 2.645 18.263 hybrid contribution -0.377 0.524 -1.671 1.791 sum -18.262 -2.058 0.974 18.404 Atomic orbital electron populations 1.23024 0.78707 1.03761 1.01210 1.86098 1.21098 1.26901 1.89002 1.18966 0.92197 0.84096 0.97927 1.21035 0.99789 0.91836 1.08864 1.21166 0.93829 0.97633 1.00284 1.18235 0.89776 0.85096 1.02925 1.84819 1.79806 1.31756 1.33651 1.20387 0.97142 0.91717 0.98257 1.19727 0.85853 1.00687 0.88795 1.46151 1.08643 1.77497 1.09410 1.18225 0.78950 0.77249 0.89595 1.90607 1.53230 1.55224 1.47063 1.20823 0.92176 1.50115 0.95136 0.91512 1.25703 0.96661 0.93104 0.97732 1.70013 1.02304 1.35232 1.32095 0.86432 0.77817 0.79658 0.82798 1.19302 1.20570 1.19326 1.20308 0.91108 0.98156 1.04475 0.92783 0.92750 0.88388 0.85386 0.85286 0.75356 0.92376 0.91470 0.79136 0.92034 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.90 10.50 -19.69 -0.21 -4.10 16 3 C 0.11 1.51 6.69 -39.24 -0.26 1.25 16 4 C -0.20 -2.29 9.03 -39.45 -0.36 -2.65 16 5 C -0.11 -1.38 9.98 -39.45 -0.39 -1.77 16 6 C 0.08 1.27 6.68 -39.25 -0.26 1.01 16 7 O -0.49 -7.50 12.83 -19.69 -0.25 -7.75 16 8 C -0.07 -1.21 5.26 -104.49 -0.55 -1.76 16 9 C 0.17 3.51 5.41 -5.19 -0.03 3.48 16 10 N -0.76 -17.03 5.54 -62.90 -0.35 -17.38 16 11 C 0.56 15.86 7.75 -12.99 -0.10 15.76 16 12 O -0.58 -18.95 15.02 5.20 0.08 -18.88 16 13 C -0.55 -15.35 9.54 -35.63 -0.34 -15.69 16 14 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 15 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 16 N -0.77 -23.15 11.83 55.55 0.66 -22.49 16 17 Si 0.91 20.10 29.56 -169.99 -5.02 15.08 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 C -0.12 -1.83 9.60 -39.45 -0.38 -2.21 16 22 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 23 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.13 1.12 6.29 -52.48 -0.33 0.79 16 26 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.39 4.76 9.06 45.56 0.41 5.17 16 28 H 0.06 1.22 7.95 -51.93 -0.41 0.80 16 29 H 0.07 1.48 8.00 -51.93 -0.42 1.06 16 30 H 0.38 7.42 8.44 -40.82 -0.34 7.08 16 31 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 32 H 0.14 2.01 8.00 -52.49 -0.42 1.59 16 LS Contribution 287.26 15.07 4.33 4.33 Total: -1.00 -35.62 287.26 -5.24 -40.86 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -2.70 Total: 9.34 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.78 Total: 0.99 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.31 Total: -39.87 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.38 Total: -30.73 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.62 -5.24 -40.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773403896.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.396 kcal (2) G-P(sol) polarization free energy of solvation -35.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds