Wall clock time and date at job start Sun Mar 29 2020 23:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35985 * 116.99776 * 2 1 4 4 C 1.38715 * 120.00180 * 359.97438 * 3 2 1 5 5 C 1.38115 * 119.99935 * 179.97438 * 4 3 2 6 6 C 1.38711 * 120.00055 * 0.02562 * 5 4 3 7 7 O 1.35985 * 119.99810 * 179.97438 * 6 5 4 8 8 C 1.38672 * 119.99983 * 0.02562 * 6 5 4 9 9 C 1.50703 * 119.99968 * 179.97438 * 8 6 5 10 10 N 1.46506 * 109.47289 * 285.00141 * 9 8 6 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 8 12 12 O 1.21682 * 120.00244 * 0.02562 * 11 10 9 13 13 C 1.46376 * 119.99597 * 180.02562 * 11 10 9 14 14 H 1.07995 * 120.00074 * 359.97438 * 13 11 10 15 15 C 1.40050 * 119.99840 * 179.97438 * 13 11 10 16 16 N 1.30681 * 119.99902 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00281 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46848 * 60.00282 * 17 15 13 19 19 H 1.48503 * 109.47237 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47035 * 300.00378 * 17 15 13 21 21 C 1.38148 * 120.00475 * 0.23416 * 8 6 5 22 22 H 1.08992 * 109.47622 * 300.00384 * 1 2 3 23 23 H 1.09004 * 109.47035 * 59.99986 * 1 2 3 24 24 H 1.09004 * 109.47288 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00308 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.99722 * 179.97438 * 5 4 3 27 27 H 0.96693 * 114.00076 * 270.01856 * 7 6 5 28 28 H 1.09001 * 109.47438 * 164.99922 * 9 8 6 29 29 H 1.09004 * 109.47113 * 45.00178 * 9 8 6 30 30 H 0.97001 * 119.99251 * 0.02562 * 10 9 8 31 31 H 0.96999 * 120.00129 * 179.97438 * 16 15 13 32 32 H 1.08001 * 120.00443 * 179.72247 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 0.0000 6 6 3.3030 3.6782 0.0005 7 8 3.9203 4.8899 0.0005 8 6 4.0583 2.5152 0.0000 9 6 5.5632 2.5941 0.0000 10 7 6.0322 2.9773 -1.3340 11 6 7.3521 3.1109 -1.5717 12 8 8.1543 2.9129 -0.6785 13 6 7.8205 3.4944 -2.9044 14 1 7.1085 3.6697 -3.6973 15 6 9.1920 3.6337 -3.1514 16 7 10.0535 3.4210 -2.1921 17 14 9.7899 4.1223 -4.8523 18 1 9.2239 5.4466 -5.2145 19 1 11.2729 4.2007 -4.8521 20 1 9.3484 3.1076 -5.8426 21 6 3.4312 1.2843 -0.0060 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2122 2.3185 -0.0014 26 1 1.3295 4.5114 -0.0008 27 1 4.0990 5.2403 -0.8828 28 1 5.9781 1.6218 0.2655 29 1 5.8881 3.3385 0.7270 30 1 5.3926 3.1356 -2.0459 31 1 11.0034 3.5172 -2.3631 32 1 4.0194 0.3785 -0.0109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773403896.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:28 Heat of formation + Delta-G solvation = -124.404124 kcal Electronic energy + Delta-G solvation = -17721.349069 eV Core-core repulsion = 14646.266825 eV Total energy + Delta-G solvation = -3075.082244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40509 -39.75836 -39.02601 -36.87336 -35.36878 -34.47273 -32.30616 -30.51154 -28.69277 -27.92848 -26.39306 -23.65680 -22.40115 -21.71262 -19.52757 -19.17510 -18.51709 -17.62376 -17.43767 -16.72844 -16.36813 -16.06253 -15.93888 -15.56760 -15.05834 -14.78414 -14.41408 -14.09902 -13.67089 -13.32680 -13.19894 -13.10144 -12.90931 -12.65827 -12.60623 -12.31969 -12.05083 -11.79317 -11.30855 -10.90964 -10.19028 -9.78343 -9.52435 -9.03940 -8.27886 -6.85538 0.12975 0.28497 1.41719 1.45435 1.57284 2.24961 2.32919 2.47879 2.51345 3.25548 3.37322 3.61004 3.68147 3.78802 4.08894 4.25641 4.36488 4.44987 4.48556 4.69133 4.74224 4.78218 4.94968 5.10234 5.23558 5.32426 5.45261 5.59273 5.86275 6.16016 6.25230 6.39575 6.83542 6.86986 7.52994 8.48612 8.67697 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.034011 B = 0.004585 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.068896 B = 6104.973450 C = 6260.785851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.114 3.886 4 C -0.179 4.179 5 C -0.100 4.100 6 C 0.073 3.927 7 O -0.506 6.506 8 C -0.091 4.091 9 C 0.183 3.817 10 N -0.744 5.744 11 C 0.538 3.462 12 O -0.633 6.633 13 C -0.571 4.571 14 H 0.090 0.910 15 C 0.028 3.972 16 N -0.823 5.823 17 Si 1.001 2.999 18 H -0.252 1.252 19 H -0.276 1.276 20 H -0.255 1.255 21 C -0.136 4.136 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.117 0.883 25 H 0.167 0.833 26 H 0.159 0.841 27 H 0.401 0.599 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.393 0.607 31 H 0.275 0.725 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.660 -1.659 -0.515 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.069 3.931 4 C -0.197 4.197 5 C -0.118 4.118 6 C 0.028 3.972 7 O -0.317 6.317 8 C -0.093 4.093 9 C 0.059 3.941 10 N -0.398 5.398 11 C 0.343 3.657 12 O -0.521 6.521 13 C -0.607 4.607 14 H 0.108 0.892 15 C -0.187 4.187 16 N -0.453 5.453 17 Si 0.820 3.180 18 H -0.176 1.176 19 H -0.201 1.201 20 H -0.179 1.179 21 C -0.156 4.156 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.135 0.865 25 H 0.185 0.815 26 H 0.177 0.823 27 H 0.258 0.742 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.227 0.773 31 H 0.084 0.916 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.865 -2.071 0.833 20.984 hybrid contribution 0.356 0.290 -1.043 1.139 sum -20.510 -1.781 -0.210 20.588 Atomic orbital electron populations 1.23403 0.76069 1.05715 1.02625 1.86088 1.23812 1.26390 1.88699 1.18974 0.91558 0.85371 0.97235 1.21438 1.01585 0.90563 1.06149 1.21435 0.92533 0.99239 0.98639 1.18398 0.90930 0.84238 1.03638 1.84790 1.80191 1.31957 1.34811 1.19983 0.94404 0.93273 1.01597 1.19540 0.89089 0.98628 0.86832 1.45745 1.07242 1.75979 1.10847 1.18671 0.80362 0.77029 0.89684 1.90558 1.55279 1.57650 1.48588 1.21382 0.93510 1.50295 0.95561 0.89166 1.27015 0.96498 0.92176 1.03036 1.70197 1.03014 1.36544 1.35499 0.85034 0.77199 0.79977 0.75825 1.17592 1.20053 1.17860 1.20251 0.92530 0.97272 1.05497 0.91263 0.91234 0.86468 0.81526 0.82310 0.74182 0.94162 0.94025 0.77324 0.91554 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.48 10.50 -93.38 -0.98 -8.46 16 3 C 0.11 2.82 6.69 22.49 0.15 2.97 16 4 C -0.18 -3.49 9.03 22.35 0.20 -3.29 16 5 C -0.10 -2.18 9.98 22.35 0.22 -1.95 16 6 C 0.07 2.13 6.68 22.49 0.15 2.28 16 7 O -0.51 -15.33 12.83 -93.38 -1.20 -16.53 16 8 C -0.09 -3.05 5.26 -19.78 -0.10 -3.16 16 9 C 0.18 7.86 5.41 85.63 0.46 8.33 16 10 N -0.74 -34.55 5.54 -471.13 -2.61 -37.16 16 11 C 0.54 31.95 7.75 86.36 0.67 32.62 16 12 O -0.63 -43.84 15.02 -4.29 -0.06 -43.91 16 13 C -0.57 -32.53 9.54 24.83 0.24 -32.29 16 14 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 15 C 0.03 1.56 5.50 85.30 0.47 2.03 16 16 N -0.82 -51.17 11.83 21.84 0.26 -50.91 16 17 Si 1.00 40.96 29.56 68.60 2.03 42.98 16 18 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 19 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 21 C -0.14 -4.14 9.60 22.36 0.21 -3.92 16 22 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 23 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 24 H 0.12 0.90 8.14 -2.38 -0.02 0.89 16 25 H 0.17 1.97 6.29 -2.91 -0.02 1.95 16 26 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 27 H 0.40 9.64 9.06 -74.06 -0.67 8.97 16 28 H 0.04 1.83 7.95 -2.39 -0.02 1.81 16 29 H 0.04 1.97 8.00 -2.38 -0.02 1.95 16 30 H 0.39 15.68 8.44 -92.71 -0.78 14.90 16 31 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 32 H 0.13 3.94 8.00 -2.91 -0.02 3.92 16 Total: -1.00 -80.94 287.26 0.93 -80.00 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.28 Total: 29.08 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 3.79 Total: 4.91 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -2.35 Total: -88.08 kcal Atomic # 8 Polarization: -66.66 SS G_CDS: -2.24 Total: -68.90 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -80.94 0.93 -80.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773403896.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.401 kcal (2) G-P(sol) polarization free energy of solvation -80.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds