Wall clock time and date at job start Sun Mar 29 2020 23:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00011 * 2 1 4 4 H 1.48504 * 109.46899 * 269.99731 * 3 2 1 5 5 H 1.48500 * 109.47277 * 30.00054 * 3 2 1 6 6 H 1.48503 * 109.46966 * 150.00183 * 3 2 1 7 7 C 1.37883 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00556 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99341 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00068 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99923 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99982 * 179.97438 * 11 10 9 14 14 H 1.08999 * 109.46731 * 344.99989 * 13 11 10 15 15 F 1.39896 * 109.47041 * 105.00636 * 13 11 10 16 16 C 1.53004 * 109.46689 * 225.00226 * 13 11 10 17 17 C 1.50706 * 109.46503 * 174.99875 * 16 13 11 18 18 C 1.38238 * 119.99727 * 90.00317 * 17 16 13 19 19 C 1.38234 * 119.99693 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00240 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.38234 * 120.00207 * 270.01808 * 17 16 13 23 23 H 0.97000 * 119.99765 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47251 * 59.99717 * 9 7 2 25 25 H 1.08998 * 109.47045 * 299.99586 * 9 7 2 26 26 H 0.97001 * 120.00002 * 359.97438 * 10 9 7 27 27 H 1.09000 * 109.47324 * 55.00464 * 16 13 11 28 28 H 1.08993 * 109.47443 * 294.99668 * 16 13 11 29 29 H 1.07997 * 119.99846 * 359.97438 * 18 17 16 30 30 H 1.07999 * 119.99751 * 179.97438 * 19 18 17 31 31 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 32 32 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 33 33 H 1.07999 * 120.00008 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5754 0.0022 11 6 5.3249 -2.8217 0.0024 12 8 6.1130 -1.8999 0.0021 13 6 5.8272 -4.2425 0.0041 14 1 5.0124 -4.9155 0.2710 15 9 6.3045 -4.5699 -1.2695 16 6 6.9590 -4.3820 1.0243 17 6 7.3782 -5.8268 1.1149 18 6 8.3751 -6.3103 0.2882 19 6 8.7593 -7.6356 0.3710 20 6 8.1469 -8.4773 1.2806 21 6 7.1466 -7.9950 2.1038 22 6 6.7656 -6.6685 2.0243 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6805 -0.8889 26 1 3.3696 -3.3126 0.0029 27 1 6.6123 -4.0424 2.0003 28 1 7.8086 -3.7762 0.7095 29 1 8.8532 -5.6528 -0.4227 30 1 9.5378 -8.0134 -0.2751 31 1 8.4468 -9.5128 1.3449 32 1 6.6651 -8.6536 2.8115 33 1 5.9863 -6.2909 2.6696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787621285.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:36 Heat of formation + Delta-G solvation = -73.094969 kcal Electronic energy + Delta-G solvation = -17415.523964 eV Core-core repulsion = 14355.039441 eV Total energy + Delta-G solvation = -3060.484523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.71551 -39.44306 -38.86689 -34.51273 -33.74563 -32.44094 -31.03215 -29.72718 -27.90178 -24.72307 -22.71359 -22.09150 -21.07877 -20.14035 -17.91293 -16.91303 -16.62242 -16.33263 -15.69405 -15.20325 -15.08608 -14.72172 -14.41320 -14.06792 -13.56211 -13.44803 -13.17388 -12.81706 -12.56167 -12.36642 -12.18365 -11.96969 -11.33012 -11.19923 -11.09679 -11.00475 -10.81720 -10.02748 -9.56821 -9.36909 -9.06086 -8.85095 -8.82578 -8.32356 -6.26466 -4.29706 1.16633 1.26196 2.87387 3.23416 3.29931 3.37602 3.48868 3.71439 4.28705 4.50545 4.60710 4.71922 4.82330 4.86129 4.98277 5.01460 5.08622 5.17315 5.36685 5.42584 5.72805 5.73869 5.92304 5.95146 6.30636 6.35989 6.49350 6.68618 6.85199 6.97134 7.02943 7.28367 7.98389 8.37003 8.60208 8.74665 9.32460 10.85314 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.046051 B = 0.004068 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.871067 B = 6881.232671 C = 7127.420849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.218 3.782 10 N -0.693 5.693 11 C 0.479 3.521 12 O -0.540 6.540 13 C 0.089 3.911 14 H 0.098 0.902 15 F -0.191 7.191 16 C -0.097 4.097 17 C -0.084 4.084 18 C -0.104 4.104 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.114 4.114 23 H 0.268 0.732 24 H 0.029 0.971 25 H 0.024 0.976 26 H 0.399 0.601 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.146 -15.174 3.372 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.096 3.904 10 N -0.341 5.341 11 C 0.261 3.739 12 O -0.418 6.418 13 C 0.049 3.951 14 H 0.116 0.884 15 F -0.172 7.172 16 C -0.135 4.135 17 C -0.084 4.084 18 C -0.122 4.122 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.132 4.132 23 H 0.078 0.922 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.234 0.766 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.513 -14.363 3.340 20.690 hybrid contribution -0.059 0.467 -0.139 0.491 sum 14.454 -13.896 3.201 20.305 Atomic orbital electron populations 1.69879 1.06210 1.27525 1.49106 1.24794 0.94809 0.99190 0.93759 0.86815 0.80533 0.83198 0.79138 1.19767 1.20799 1.18514 1.21063 0.88308 0.95350 1.53727 0.90130 1.19594 0.95512 0.78212 0.97097 1.46286 1.05358 1.11611 1.70879 1.20776 0.83815 0.90616 0.78717 1.90682 1.55453 1.45738 1.49884 1.21578 0.97653 0.95249 0.80592 0.88445 1.92861 1.89913 1.93384 1.41048 1.21039 0.99049 0.93593 0.99845 1.19776 0.96852 0.95143 0.96676 1.21137 0.96899 0.95795 0.98382 1.21154 1.00146 0.93797 0.98804 1.21159 0.96931 0.99659 0.96453 1.21135 0.97686 0.95557 0.99531 1.21125 0.99842 0.93700 0.98582 0.92166 0.95342 0.95832 0.76639 0.88646 0.88476 0.85782 0.86081 0.86243 0.86030 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 2 C 0.08 2.20 5.47 -17.81 -0.10 2.10 16 3 Si 0.88 21.15 27.47 -169.99 -4.67 16.49 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.55 -14.77 9.83 -34.43 -0.34 -15.11 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.84 16 9 C 0.22 5.27 4.50 -5.19 -0.02 5.24 16 10 N -0.69 -13.76 5.55 -61.47 -0.34 -14.10 16 11 C 0.48 9.01 7.17 -10.99 -0.08 8.93 16 12 O -0.54 -12.09 16.60 5.56 0.09 -11.99 16 13 C 0.09 1.28 3.76 -27.88 -0.10 1.17 16 14 H 0.10 1.14 7.99 -51.93 -0.42 0.72 16 15 F -0.19 -3.04 16.75 2.25 0.04 -3.00 16 16 C -0.10 -1.22 4.82 -27.88 -0.13 -1.35 16 17 C -0.08 -0.97 5.00 -104.62 -0.52 -1.49 16 18 C -0.10 -1.15 9.55 -39.58 -0.38 -1.53 16 19 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 20 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.11 -1.17 9.70 -39.58 -0.38 -1.55 16 23 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 25 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 26 H 0.40 6.88 8.21 -40.82 -0.34 6.54 16 27 H 0.10 1.10 8.09 -51.93 -0.42 0.68 16 28 H 0.10 1.29 7.99 -51.93 -0.42 0.88 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -31.88 294.52 -6.97 -38.85 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.04 Total: 2.87 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.26 Total: -8.19 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.43 Total: -39.46 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.88 -6.97 -38.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621285.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.242 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds