Wall clock time and date at job start Sun Mar 29 2020 23:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00011 * 2 1 4 4 H 1.48504 * 109.46899 * 269.99731 * 3 2 1 5 5 H 1.48500 * 109.47277 * 30.00054 * 3 2 1 6 6 H 1.48503 * 109.46966 * 150.00183 * 3 2 1 7 7 C 1.37883 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00556 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99341 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00068 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99923 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99982 * 179.97438 * 11 10 9 14 14 H 1.08999 * 109.46731 * 344.99989 * 13 11 10 15 15 F 1.39896 * 109.47041 * 105.00636 * 13 11 10 16 16 C 1.53004 * 109.46689 * 225.00226 * 13 11 10 17 17 C 1.50706 * 109.46503 * 174.99875 * 16 13 11 18 18 C 1.38238 * 119.99727 * 90.00317 * 17 16 13 19 19 C 1.38234 * 119.99693 * 180.02562 * 18 17 16 20 20 C 1.38234 * 120.00240 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.38234 * 120.00207 * 270.01808 * 17 16 13 23 23 H 0.97000 * 119.99765 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47251 * 59.99717 * 9 7 2 25 25 H 1.08998 * 109.47045 * 299.99586 * 9 7 2 26 26 H 0.97001 * 120.00002 * 359.97438 * 10 9 7 27 27 H 1.09000 * 109.47324 * 55.00464 * 16 13 11 28 28 H 1.08993 * 109.47443 * 294.99668 * 16 13 11 29 29 H 1.07997 * 119.99846 * 359.97438 * 18 17 16 30 30 H 1.07999 * 119.99751 * 179.97438 * 19 18 17 31 31 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 32 32 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 33 33 H 1.07999 * 120.00008 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5754 0.0022 11 6 5.3249 -2.8217 0.0024 12 8 6.1130 -1.8999 0.0021 13 6 5.8272 -4.2425 0.0041 14 1 5.0124 -4.9155 0.2710 15 9 6.3045 -4.5699 -1.2695 16 6 6.9590 -4.3820 1.0243 17 6 7.3782 -5.8268 1.1149 18 6 8.3751 -6.3103 0.2882 19 6 8.7593 -7.6356 0.3710 20 6 8.1469 -8.4773 1.2806 21 6 7.1466 -7.9950 2.1038 22 6 6.7656 -6.6685 2.0243 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6805 -0.8889 26 1 3.3696 -3.3126 0.0029 27 1 6.6123 -4.0424 2.0003 28 1 7.8086 -3.7762 0.7095 29 1 8.8532 -5.6528 -0.4227 30 1 9.5378 -8.0134 -0.2751 31 1 8.4468 -9.5128 1.3449 32 1 6.6651 -8.6536 2.8115 33 1 5.9863 -6.2909 2.6696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787621285.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:35 Heat of formation + Delta-G solvation = -93.285404 kcal Electronic energy + Delta-G solvation = -17416.399487 eV Core-core repulsion = 14355.039441 eV Total energy + Delta-G solvation = -3061.360046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.95287 -40.65478 -40.00860 -36.32282 -34.73557 -34.44182 -31.74852 -31.02428 -29.51550 -25.98768 -23.84621 -23.43792 -22.06628 -21.63367 -19.55061 -18.27494 -17.91132 -17.61494 -16.98784 -16.55731 -16.25580 -15.86195 -15.71787 -15.64585 -15.16138 -14.50838 -14.25860 -14.17991 -13.94975 -13.69035 -13.58979 -13.13221 -12.97570 -12.73314 -12.30541 -11.96646 -11.94706 -11.83000 -11.68995 -10.94181 -10.89446 -10.10208 -9.79104 -9.63358 -8.41526 -6.49322 0.40529 0.53190 1.31415 1.35055 1.36273 1.46850 2.09102 2.26988 2.87271 2.93795 3.39184 3.60228 3.64381 3.84433 3.97973 4.14706 4.20256 4.34152 4.56618 4.65360 4.71460 4.82584 4.85624 4.97149 5.13679 5.20127 5.21112 5.34574 5.59412 5.65329 5.71189 6.02600 6.14122 6.49347 6.63842 7.05296 7.21560 8.73033 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.046051 B = 0.004068 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.871067 B = 6881.232671 C = 7127.420849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.028 3.972 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.228 3.772 10 N -0.692 5.692 11 C 0.479 3.521 12 O -0.576 6.576 13 C 0.099 3.901 14 H 0.131 0.869 15 F -0.199 7.199 16 C -0.091 4.091 17 C -0.099 4.099 18 C -0.122 4.122 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.122 4.122 23 H 0.273 0.727 24 H 0.021 0.979 25 H 0.013 0.987 26 H 0.413 0.587 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.096 -16.456 3.946 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.587 4.587 8 H 0.080 0.920 9 C 0.104 3.896 10 N -0.341 5.341 11 C 0.264 3.736 12 O -0.457 6.457 13 C 0.060 3.940 14 H 0.149 0.851 15 F -0.179 7.179 16 C -0.129 4.129 17 C -0.099 4.099 18 C -0.141 4.141 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.140 4.140 23 H 0.082 0.918 24 H 0.039 0.961 25 H 0.031 0.969 26 H 0.249 0.751 27 H 0.123 0.877 28 H 0.101 0.899 29 H 0.137 0.863 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 15.465 -15.682 3.912 22.369 hybrid contribution -0.348 0.759 -0.317 0.893 sum 15.117 -14.923 3.595 21.544 Atomic orbital electron populations 1.69978 1.07693 1.28688 1.50444 1.25594 0.95541 1.02669 0.93507 0.85871 0.79355 0.79338 0.79427 1.19172 1.19734 1.18214 1.21266 0.89749 0.94739 1.52948 0.92026 1.19220 0.93635 0.80555 0.96164 1.46132 1.06373 1.10414 1.71214 1.21554 0.82797 0.92325 0.76973 1.90662 1.56220 1.47585 1.51196 1.21644 0.99336 0.92360 0.80678 0.85107 1.92850 1.90122 1.93122 1.41852 1.20967 0.97785 0.94616 0.99495 1.19710 0.97857 0.94475 0.97901 1.21268 0.97379 0.96678 0.98728 1.21426 1.00594 0.93301 0.99272 1.21527 0.96338 1.00799 0.95627 1.21477 0.97598 0.95486 0.99771 1.21350 1.00103 0.94131 0.98410 0.91776 0.96082 0.96897 0.75088 0.87694 0.89861 0.86253 0.84301 0.83780 0.83751 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.88 13.96 21.45 0.30 -54.58 16 2 C 0.03 1.54 5.47 84.66 0.46 2.00 16 3 Si 0.94 43.39 27.47 68.60 1.88 45.27 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 7 C -0.55 -29.79 9.83 25.60 0.25 -29.54 16 8 H 0.06 3.50 7.84 -2.91 -0.02 3.47 16 9 C 0.23 10.95 4.50 85.63 0.39 11.33 16 10 N -0.69 -26.98 5.55 -466.78 -2.59 -29.57 16 11 C 0.48 17.66 7.17 87.66 0.63 18.28 16 12 O -0.58 -25.74 16.60 -3.03 -0.05 -25.79 16 13 C 0.10 2.69 3.76 29.85 0.11 2.81 16 14 H 0.13 2.71 7.99 -2.39 -0.02 2.69 16 15 F -0.20 -6.09 16.75 44.97 0.75 -5.34 16 16 C -0.09 -2.17 4.82 29.85 0.14 -2.03 16 17 C -0.10 -2.13 5.00 -19.86 -0.10 -2.23 16 18 C -0.12 -2.58 9.55 22.27 0.21 -2.37 16 19 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 20 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 21 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 22 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 23 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 24 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 25 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 26 H 0.41 13.80 8.21 -92.71 -0.76 13.04 16 27 H 0.10 2.27 8.09 -2.39 -0.02 2.25 16 28 H 0.08 2.21 7.99 -2.39 -0.02 2.19 16 29 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -67.82 294.52 3.58 -64.24 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.30 Total: 14.89 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 2.98 Total: -9.14 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -2.29 Total: -84.15 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.75 Total: -5.34 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Total: -67.82 3.58 -64.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621285.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.046 kcal (2) G-P(sol) polarization free energy of solvation -67.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds