Wall clock time and date at job start Sun Mar 29 2020 23:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86803 * 119.99818 * 2 1 4 4 H 1.48496 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47605 * 300.00602 * 3 2 1 6 6 H 1.48501 * 109.46815 * 60.00588 * 3 2 1 7 7 C 1.40047 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00032 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00310 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00139 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00376 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47299 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46886 * 179.97438 * 13 12 11 15 15 O 1.42903 * 109.46726 * 180.02562 * 14 13 12 16 16 C 1.35462 * 116.99536 * 180.02562 * 15 14 13 17 17 N 1.32315 * 119.19856 * 359.72800 * 16 15 14 18 18 C 1.32302 * 120.76120 * 179.75945 * 17 16 15 19 19 C 1.38590 * 119.17313 * 0.50889 * 18 17 16 20 20 C 1.38597 * 118.52185 * 359.74817 * 19 18 17 21 21 N 1.32296 * 119.17346 * 0.02562 * 20 19 18 22 22 H 0.97006 * 120.00503 * 359.97438 * 1 2 3 23 23 H 0.97003 * 119.99640 * 0.02562 * 11 9 7 24 24 H 1.09001 * 109.46596 * 59.99898 * 12 11 9 25 25 H 1.09002 * 109.47129 * 300.00253 * 12 11 9 26 26 H 1.09001 * 109.46652 * 60.00269 * 13 12 11 27 27 H 1.08992 * 109.47514 * 300.00358 * 13 12 11 28 28 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 29 29 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 30 30 H 1.07990 * 120.41485 * 180.23500 * 18 17 16 31 31 H 1.08003 * 120.74042 * 179.77222 * 19 18 17 32 32 H 1.07999 * 120.41303 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8818 2.3966 -1.2123 6 1 1.8819 2.3964 1.2126 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4804 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.2108 -6.0793 -0.0016 14 6 1.4458 -7.4043 -0.0016 15 8 2.3745 -8.4904 -0.0015 16 6 1.8567 -9.7422 -0.0019 17 7 0.5426 -9.8972 0.0030 18 6 0.0038 -11.1055 -0.0021 19 6 0.8338 -12.2153 -0.0020 20 6 2.2053 -12.0160 -0.0018 21 7 2.6774 -10.7802 -0.0013 22 1 -0.4851 0.8401 0.0004 23 1 2.9190 -3.6476 -0.0002 24 1 0.5902 -4.9739 -0.8914 25 1 0.5895 -4.9744 0.8886 26 1 2.8374 -6.0219 0.8884 27 1 2.8375 -6.0212 -0.8915 28 1 0.8193 -7.4622 0.8886 29 1 0.8189 -7.4620 -0.8914 30 1 -1.0695 -11.2254 -0.0018 31 1 0.4210 -13.2134 -0.0023 32 1 2.8803 -12.8591 -0.0021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826703612.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:35 Heat of formation + Delta-G solvation = -27.298313 kcal Electronic energy + Delta-G solvation = -16915.332325 eV Core-core repulsion = 13876.753656 eV Total energy + Delta-G solvation = -3038.578669 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38996 -38.65113 -37.31729 -34.39810 -34.05197 -32.46511 -31.76556 -30.63255 -26.82752 -25.36587 -24.62221 -23.53960 -21.38485 -19.74062 -18.91167 -17.89488 -17.07861 -16.75883 -16.26547 -15.31662 -15.13938 -15.03039 -14.59485 -14.06249 -13.83644 -13.70205 -13.50569 -12.34337 -12.32169 -11.79475 -11.40441 -11.35212 -11.21092 -11.14319 -11.06913 -10.97097 -10.49648 -10.44745 -10.18323 -9.45888 -9.26108 -8.85094 -7.61824 -7.51570 -6.17951 -4.63157 0.73107 0.77202 2.35984 3.14205 3.22301 3.27020 3.51464 3.78070 4.11111 4.27693 4.36971 4.59850 4.74567 4.79878 4.88431 5.01037 5.28708 5.35617 5.45471 5.59376 5.67767 5.86020 5.87333 6.01831 6.47981 6.52094 6.55168 7.00336 7.44680 7.83384 7.93502 8.09006 8.33896 9.03535 9.53600 10.60753 10.79088 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.078224 B = 0.002998 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.862335 B = 9337.380748 C = 9669.494787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.086 3.914 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.768 5.768 12 C 0.139 3.861 13 C -0.129 4.129 14 C 0.080 3.920 15 O -0.287 6.287 16 C 0.505 3.495 17 N -0.566 5.566 18 C 0.188 3.812 19 C -0.277 4.277 20 C 0.187 3.813 21 N -0.529 5.529 22 H 0.268 0.732 23 H 0.381 0.619 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.172 0.828 31 H 0.150 0.850 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -22.206 -0.016 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.464 6.464 11 N -0.424 5.424 12 C 0.013 3.987 13 C -0.167 4.167 14 C 0.004 3.996 15 O -0.188 6.188 16 C 0.203 3.797 17 N -0.296 5.296 18 C 0.022 3.978 19 C -0.300 4.300 20 C 0.020 3.980 21 N -0.254 5.254 22 H 0.078 0.922 23 H 0.213 0.787 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.189 0.811 31 H 0.168 0.832 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.460 -20.943 -0.009 21.087 hybrid contribution 0.324 -0.145 -0.002 0.355 sum 2.784 -21.087 -0.011 21.270 Atomic orbital electron populations 1.70032 1.07079 1.27164 1.35460 1.25722 0.94628 1.00345 0.92615 0.86305 0.80486 0.81697 0.78191 1.18763 1.20172 1.20167 1.20921 0.93644 0.89331 1.54274 0.91319 1.18242 0.87219 0.82404 0.76347 1.90598 1.14105 1.86844 1.54857 1.46112 1.08653 1.04678 1.82934 1.20652 0.93509 0.83378 1.01130 1.21793 0.99484 0.91423 1.03980 1.22779 0.90887 0.82601 1.03348 1.86083 1.36273 1.10332 1.86096 1.20792 0.84225 0.86840 0.87807 1.68178 1.12780 1.28136 1.20508 1.23030 1.01095 0.86206 0.87462 1.22731 0.95964 1.01851 1.09413 1.23115 0.93939 0.92945 0.87958 1.67620 1.39842 0.98605 1.19367 0.92158 0.78707 0.93027 0.93018 0.90470 0.90462 0.90787 0.90793 0.81105 0.83239 0.80769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.32 11.83 55.55 0.66 -22.66 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.31 29.56 -169.99 -5.02 15.28 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -15.57 9.54 -35.63 -0.34 -15.91 16 8 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 9 C 0.55 16.02 7.75 -12.99 -0.10 15.92 16 10 O -0.58 -19.13 15.02 5.20 0.08 -19.05 16 11 N -0.77 -17.39 5.55 -61.72 -0.34 -17.73 16 12 C 0.14 2.66 5.67 -4.04 -0.02 2.63 16 13 C -0.13 -1.88 5.70 -26.73 -0.15 -2.04 16 14 C 0.08 1.10 5.29 37.16 0.20 1.30 16 15 O -0.29 -4.27 10.20 -18.08 -0.18 -4.46 16 16 C 0.51 7.01 8.49 -91.25 -0.77 6.24 16 17 N -0.57 -7.00 9.23 -14.73 -0.14 -7.13 16 18 C 0.19 1.57 11.30 -17.22 -0.19 1.38 16 19 C -0.28 -1.80 10.16 -39.32 -0.40 -2.20 16 20 C 0.19 1.51 11.30 -17.22 -0.19 1.32 16 21 N -0.53 -6.67 10.46 -14.73 -0.15 -6.82 16 22 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 23 H 0.38 7.54 8.45 -40.82 -0.35 7.20 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 29 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 30 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.15 0.44 8.06 -52.48 -0.42 0.02 16 32 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 291.38 15.07 4.39 4.39 Total: -1.00 -37.25 291.38 -6.48 -43.74 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -3.69 Total: 3.46 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -2.08 Total: 10.98 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.02 Total: -54.35 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.11 Total: -23.51 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -37.25 -6.48 -43.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826703612.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.441 kcal (2) G-P(sol) polarization free energy of solvation -37.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds