Wall clock time and date at job start Sun Mar 29 2020 22:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38387 * 119.39598 * 84.72878 * 4 2 1 6 6 C 1.38312 * 119.46403 * 179.70984 * 5 4 2 7 7 C 1.40075 * 118.34115 * 0.54756 * 6 5 4 8 8 C 1.47337 * 120.60320 * 179.71317 * 7 6 5 9 9 O 1.21537 * 120.00110 * 180.02562 * 8 7 6 10 10 O 1.34780 * 120.00069 * 0.02562 * 8 7 6 11 11 C 1.34858 * 116.99875 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00374 * 0.02562 * 11 10 8 13 13 C 1.38800 * 120.00035 * 179.97438 * 11 10 8 14 14 N 1.31422 * 120.00322 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99776 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47050 * 89.99962 * 15 13 11 17 17 H 1.48495 * 109.47259 * 209.99861 * 15 13 11 18 18 H 1.48497 * 109.47208 * 329.99977 * 15 13 11 19 19 C 1.40373 * 118.79139 * 359.73568 * 7 6 5 20 20 O 1.35417 * 119.80712 * 180.02562 * 19 7 6 21 21 N 1.31887 * 119.39777 * 264.99966 * 4 2 1 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.07991 * 120.26385 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.82531 * 180.26053 * 6 5 4 31 31 H 0.97002 * 120.00149 * 180.02562 * 14 13 11 32 32 H 0.96695 * 114.00056 * 269.98166 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1543 -0.0093 -2.4173 6 6 2.6209 -0.6584 -3.5461 7 6 2.9444 -2.0176 -3.4456 8 6 3.4397 -2.7594 -4.6182 9 8 3.7167 -3.9386 -4.5188 10 8 3.5858 -2.1303 -5.8012 11 6 4.0440 -2.8668 -6.8338 12 1 4.2752 -3.9121 -6.6910 13 6 4.2174 -2.2818 -8.0805 14 7 4.6634 -2.9997 -9.0870 15 14 3.8168 -0.4741 -8.3278 16 1 5.0257 0.3431 -8.0517 17 1 3.3782 -0.2514 -9.7289 18 1 2.7281 -0.0768 -7.3993 19 6 2.7875 -2.6601 -2.2074 20 8 3.0945 -3.9735 -2.0869 21 7 2.3425 -1.9902 -1.1578 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.8914 1.0372 -2.4608 30 1 2.7287 -0.1315 -4.4826 31 1 4.7850 -2.5907 -9.9581 32 1 2.3541 -4.5686 -2.2677 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924084202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:36 Heat of formation + Delta-G solvation = -89.743548 kcal Electronic energy + Delta-G solvation = -18039.827816 eV Core-core repulsion = 14966.248567 eV Total energy + Delta-G solvation = -3073.579249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.63285 -38.93233 -37.35330 -35.25650 -35.04772 -32.60424 -32.26047 -29.66025 -27.37150 -26.00170 -24.38437 -23.07743 -21.20588 -20.24234 -18.18496 -18.05670 -17.22341 -16.67244 -15.80544 -15.29142 -14.94244 -14.50510 -14.45339 -14.13885 -13.77290 -13.19134 -13.04688 -12.59633 -12.51836 -12.28753 -12.00938 -11.60851 -11.44273 -11.43643 -11.28213 -11.01740 -10.59707 -10.48421 -9.81695 -9.72986 -9.56889 -9.07874 -8.77869 -8.66854 -6.47333 -4.17934 0.75903 1.26070 3.08932 3.16602 3.25093 3.29175 3.59895 3.94012 4.11497 4.16155 4.43910 4.66852 4.92889 4.97478 5.04983 5.06282 5.13294 5.38525 5.43647 5.53895 5.60626 5.68152 5.75696 5.98739 6.04287 6.05954 6.17658 6.39039 6.59115 7.62720 7.74274 7.94262 7.99190 8.55428 8.90117 9.58948 10.60504 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.028713 B = 0.006053 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.943277 B = 4624.798246 C = 5435.330253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C -0.148 4.148 4 C 0.167 3.833 5 C -0.193 4.193 6 C -0.021 4.021 7 C -0.162 4.162 8 C 0.448 3.552 9 O -0.518 6.518 10 O -0.245 6.245 11 C -0.372 4.372 12 H 0.112 0.888 13 C 0.065 3.935 14 N -0.866 5.866 15 Si 0.905 3.095 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.260 1.260 19 C 0.363 3.637 20 O -0.458 6.458 21 N -0.508 5.508 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.282 0.718 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.521 10.104 14.721 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.206 4.206 4 C 0.028 3.972 5 C -0.212 4.212 6 C -0.046 4.046 7 C -0.167 4.167 8 C 0.294 3.706 9 O -0.413 6.413 10 O -0.154 6.154 11 C -0.447 4.447 12 H 0.130 0.870 13 C -0.139 4.139 14 N -0.505 5.505 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.184 1.184 19 C 0.183 3.817 20 O -0.265 6.265 21 N -0.227 5.227 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.160 0.840 30 H 0.168 0.832 31 H 0.092 0.908 32 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.896 9.469 15.377 19.710 hybrid contribution -0.318 0.808 -1.287 1.553 sum -8.214 10.277 14.090 19.278 Atomic orbital electron populations 1.21803 0.93464 1.02442 1.02163 1.20092 0.96273 0.95417 0.94881 1.21939 1.01585 0.94678 1.02369 1.21072 0.92822 0.88460 0.94823 1.21903 1.04342 1.01914 0.93085 1.21941 0.90781 0.92515 0.99372 1.20549 1.07162 0.95565 0.93379 1.20012 0.81433 0.85987 0.83183 1.90713 1.49757 1.16330 1.84543 1.83523 1.71039 1.43078 1.17718 1.20725 1.42108 0.96368 0.85513 0.87033 1.24577 0.95644 1.00000 0.93727 1.69591 1.42301 1.37045 1.01537 0.86226 0.79749 0.83196 0.77849 1.19668 1.20547 1.18370 1.19060 0.90286 0.86350 0.85995 1.84716 1.38746 1.11363 1.91720 1.67055 1.14167 1.09698 1.31790 0.92306 0.92236 0.91856 0.89102 0.91919 0.91805 0.92183 0.83982 0.83151 0.90802 0.73833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.18 37.16 0.34 -0.84 16 2 C -0.05 -0.47 3.22 -91.77 -0.30 -0.76 16 3 C -0.15 -1.15 8.62 37.16 0.32 -0.83 16 4 C 0.17 2.25 5.79 -82.51 -0.48 1.77 16 5 C -0.19 -2.50 9.15 -39.50 -0.36 -2.87 16 6 C -0.02 -0.33 9.73 -38.87 -0.38 -0.71 16 7 C -0.16 -3.18 5.90 -104.70 -0.62 -3.80 16 8 C 0.45 10.98 7.83 34.43 0.27 11.25 16 9 O -0.52 -14.01 14.44 -26.59 -0.38 -14.40 16 10 O -0.24 -6.44 7.90 -21.78 -0.17 -6.61 16 11 C -0.37 -10.95 10.11 30.94 0.31 -10.64 16 12 H 0.11 3.63 7.09 -52.49 -0.37 3.25 16 13 C 0.07 1.83 5.50 -17.52 -0.10 1.74 16 14 N -0.87 -25.21 13.96 55.49 0.77 -24.43 16 15 Si 0.90 20.75 28.62 -169.99 -4.86 15.88 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 19 C 0.36 6.68 7.77 -16.58 -0.13 6.55 16 20 O -0.46 -8.42 11.66 -39.72 -0.46 -8.88 16 21 N -0.51 -8.29 10.28 -9.18 -0.09 -8.39 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.44 6.47 -51.93 -0.34 0.10 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.14 1.37 6.29 -52.49 -0.33 1.04 16 30 H 0.15 2.35 7.70 -52.49 -0.40 1.95 16 31 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.40 5.62 9.06 45.56 0.41 6.03 16 LS Contribution 284.73 15.07 4.29 4.29 Total: -1.00 -33.52 284.73 -4.73 -38.25 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -2.70 Total: 3.43 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.11 Total: 0.86 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.68 Total: -32.82 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.02 Total: -29.89 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.86 Total: 15.88 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.52 -4.73 -38.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924084202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.496 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds