Wall clock time and date at job start Sun Mar 29 2020 22:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38387 * 119.39598 * 84.72878 * 4 2 1 6 6 C 1.38312 * 119.46403 * 179.70984 * 5 4 2 7 7 C 1.40075 * 118.34115 * 0.54756 * 6 5 4 8 8 C 1.47337 * 120.60320 * 179.71317 * 7 6 5 9 9 O 1.21537 * 120.00110 * 180.02562 * 8 7 6 10 10 O 1.34780 * 120.00069 * 0.02562 * 8 7 6 11 11 C 1.34858 * 116.99875 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00374 * 0.02562 * 11 10 8 13 13 C 1.38800 * 120.00035 * 179.97438 * 11 10 8 14 14 N 1.31422 * 120.00322 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99776 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47050 * 89.99962 * 15 13 11 17 17 H 1.48495 * 109.47259 * 209.99861 * 15 13 11 18 18 H 1.48497 * 109.47208 * 329.99977 * 15 13 11 19 19 C 1.40373 * 118.79139 * 359.73568 * 7 6 5 20 20 O 1.35417 * 119.80712 * 180.02562 * 19 7 6 21 21 N 1.31887 * 119.39777 * 264.99966 * 4 2 1 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.07991 * 120.26385 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.82531 * 180.26053 * 6 5 4 31 31 H 0.97002 * 120.00149 * 180.02562 * 14 13 11 32 32 H 0.96695 * 114.00056 * 269.98166 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1543 -0.0093 -2.4173 6 6 2.6209 -0.6584 -3.5461 7 6 2.9444 -2.0176 -3.4456 8 6 3.4397 -2.7594 -4.6182 9 8 3.7167 -3.9386 -4.5188 10 8 3.5858 -2.1303 -5.8012 11 6 4.0440 -2.8668 -6.8338 12 1 4.2752 -3.9121 -6.6910 13 6 4.2174 -2.2818 -8.0805 14 7 4.6634 -2.9997 -9.0870 15 14 3.8168 -0.4741 -8.3278 16 1 5.0257 0.3431 -8.0517 17 1 3.3782 -0.2514 -9.7289 18 1 2.7281 -0.0768 -7.3993 19 6 2.7875 -2.6601 -2.2074 20 8 3.0945 -3.9735 -2.0869 21 7 2.3425 -1.9902 -1.1578 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.8914 1.0372 -2.4608 30 1 2.7287 -0.1315 -4.4826 31 1 4.7850 -2.5907 -9.9581 32 1 2.3541 -4.5686 -2.2677 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924084202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:36 Heat of formation + Delta-G solvation = -115.159252 kcal Electronic energy + Delta-G solvation = -18040.929923 eV Core-core repulsion = 14966.248567 eV Total energy + Delta-G solvation = -3074.681357 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.03192 -40.77909 -38.68069 -37.27226 -36.05760 -34.57451 -33.72992 -30.94247 -27.97856 -27.93082 -25.79764 -24.37581 -22.63652 -21.56977 -20.22774 -19.51028 -18.93044 -17.97497 -17.30292 -17.01622 -16.56850 -16.04218 -15.87381 -15.23992 -14.88896 -14.63652 -14.43108 -14.17016 -13.77474 -13.57523 -13.28454 -12.86345 -12.81475 -12.46545 -12.39122 -12.30137 -12.02595 -11.89763 -11.78816 -11.30402 -11.04488 -10.86973 -10.56351 -9.96724 -8.58956 -6.44533 -0.59996 0.01122 1.32099 1.34311 1.52272 1.64434 2.12030 2.26313 2.37936 2.62574 2.91724 3.37193 3.62664 3.80290 3.96289 4.16572 4.28435 4.30131 4.40674 4.65192 4.84639 4.88197 4.90418 5.00245 5.07445 5.23741 5.36292 5.42293 5.46065 5.47685 5.83134 6.42987 6.47431 6.72856 6.75683 7.48749 8.53689 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.028713 B = 0.006053 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.943277 B = 4624.798246 C = 5435.330253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C -0.146 4.146 4 C 0.178 3.822 5 C -0.174 4.174 6 C -0.014 4.014 7 C -0.199 4.199 8 C 0.453 3.547 9 O -0.554 6.554 10 O -0.246 6.246 11 C -0.408 4.408 12 H 0.056 0.944 13 C 0.016 3.984 14 N -0.913 5.913 15 Si 0.982 3.018 16 H -0.258 1.258 17 H -0.264 1.264 18 H -0.241 1.241 19 C 0.359 3.641 20 O -0.479 6.479 21 N -0.519 5.519 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.190 0.810 30 H 0.160 0.840 31 H 0.291 0.709 32 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.246 14.411 16.481 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.204 4.204 4 C 0.040 3.960 5 C -0.193 4.193 6 C -0.039 4.039 7 C -0.204 4.204 8 C 0.301 3.699 9 O -0.451 6.451 10 O -0.155 6.155 11 C -0.483 4.483 12 H 0.074 0.926 13 C -0.184 4.184 14 N -0.552 5.552 15 Si 0.801 3.199 16 H -0.183 1.183 17 H -0.188 1.188 18 H -0.164 1.164 19 C 0.180 3.820 20 O -0.288 6.288 21 N -0.239 5.239 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.207 0.793 30 H 0.177 0.823 31 H 0.101 0.899 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -9.631 13.748 17.158 24.003 hybrid contribution 0.153 -0.574 -1.552 1.662 sum -9.478 13.174 15.606 22.515 Atomic orbital electron populations 1.21812 0.91913 1.02039 1.03867 1.20285 0.97342 0.96414 0.92601 1.21967 1.01227 0.92935 1.04260 1.21993 0.89871 0.87481 0.96705 1.22337 1.02056 1.03720 0.91224 1.22137 0.89859 0.90884 1.01007 1.20346 1.11153 0.97278 0.91633 1.21072 0.79155 0.85987 0.83724 1.90680 1.50918 1.18305 1.85150 1.83515 1.71997 1.42289 1.17666 1.20352 1.45519 0.94832 0.87632 0.92558 1.25639 0.94398 1.05935 0.92429 1.69691 1.43264 1.39792 1.02427 0.85104 0.80465 0.75503 0.78853 1.18251 1.18830 1.16418 1.19160 0.90296 0.86349 0.86171 1.84649 1.40198 1.12185 1.91781 1.67214 1.14844 1.11216 1.30627 0.91376 0.93742 0.89467 0.89476 0.90409 0.89676 0.92820 0.79302 0.82253 0.89850 0.72239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.18 71.98 0.66 -1.06 16 2 C -0.05 -0.73 3.22 -11.54 -0.04 -0.77 16 3 C -0.15 -1.49 8.62 71.98 0.62 -0.87 16 4 C 0.18 4.20 5.79 42.59 0.25 4.44 16 5 C -0.17 -3.77 9.15 22.32 0.20 -3.57 16 6 C -0.01 -0.41 9.73 22.73 0.22 -0.19 16 7 C -0.20 -7.82 5.90 -19.92 -0.12 -7.94 16 8 C 0.45 23.15 7.83 70.22 0.55 23.70 16 9 O -0.55 -31.98 14.44 26.69 0.39 -31.60 16 10 O -0.25 -13.31 7.90 10.81 0.09 -13.23 16 11 C -0.41 -25.38 10.11 67.95 0.69 -24.69 16 12 H 0.06 4.01 7.09 -2.91 -0.02 3.99 16 13 C 0.02 0.95 5.50 84.89 0.47 1.42 16 14 N -0.91 -55.02 13.96 21.63 0.30 -54.72 16 15 Si 0.98 42.14 28.62 68.60 1.96 44.11 16 16 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 18 H -0.24 -9.53 7.11 99.48 0.71 -8.82 16 19 C 0.36 13.23 7.77 85.15 0.66 13.89 16 20 O -0.48 -18.22 11.66 -66.30 -0.77 -18.99 16 21 N -0.52 -16.17 10.28 -295.98 -3.04 -19.22 16 22 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 24 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 0.58 6.47 -2.39 -0.02 0.56 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.19 2.36 6.29 -2.92 -0.02 2.34 16 30 H 0.16 4.49 7.70 -2.91 -0.02 4.46 16 31 H 0.29 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.42 12.33 9.06 -74.06 -0.67 11.66 16 Total: -1.00 -78.58 284.73 3.57 -75.01 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.49 Total: 14.26 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 4.16 Total: 4.38 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -2.74 Total: -73.94 kcal Atomic # 8 Polarization: -63.51 SS G_CDS: -0.30 Total: -63.81 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.96 Total: 44.11 kcal Total: -78.58 3.57 -75.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924084202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.154 kcal (2) G-P(sol) polarization free energy of solvation -78.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds