Wall clock time and date at job start Mon Mar 30 2020 00:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00134 * 2 1 4 4 H 1.48494 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47128 * 300.00609 * 3 2 1 6 6 H 1.48504 * 109.46465 * 60.00080 * 3 2 1 7 7 C 1.37875 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00723 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99810 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47143 * 300.00010 * 9 7 2 11 11 O 1.42893 * 109.47240 * 59.99929 * 9 7 2 12 12 C 1.53001 * 109.47209 * 180.02562 * 9 7 2 13 13 N 1.46889 * 109.47279 * 179.97438 * 12 9 7 14 14 C 1.47396 * 111.00318 * 293.95583 * 13 12 9 15 15 C 1.51049 * 111.55880 * 193.27089 * 14 13 12 16 16 O 1.43441 * 107.55953 * 94.02358 * 15 14 13 17 17 C 1.36614 * 117.84028 * 277.90302 * 16 15 14 18 18 C 1.54711 * 110.78782 * 61.04397 * 17 16 15 19 19 F 1.39905 * 109.53656 * 46.54122 * 18 17 16 20 20 F 1.39896 * 109.53761 * 166.69979 * 18 17 16 21 21 C 1.48120 * 110.93580 * 166.74819 * 13 12 9 22 22 H 0.96998 * 119.99901 * 359.97438 * 1 2 3 23 23 H 0.96706 * 113.99666 * 60.00243 * 11 9 7 24 24 H 1.09002 * 109.47099 * 59.99307 * 12 9 7 25 25 H 1.09001 * 109.46860 * 299.99918 * 12 9 7 26 26 H 1.08993 * 109.06599 * 72.73520 * 14 13 12 27 27 H 1.09000 * 109.00719 * 313.76322 * 14 13 12 28 28 H 1.09003 * 109.83665 * 334.50959 * 15 14 13 29 29 H 1.08997 * 109.89326 * 213.56885 * 15 14 13 30 30 H 1.08992 * 109.21846 * 300.70079 * 17 16 15 31 31 H 1.09011 * 109.21167 * 181.37415 * 17 16 15 32 32 H 1.08999 * 108.87290 * 323.10887 * 21 13 12 33 33 H 1.09002 * 108.67121 * 204.96693 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1669 12 6 2.2452 -3.6621 -0.0005 13 7 1.5107 -4.9342 0.0001 14 6 0.7631 -5.1120 1.2579 15 6 0.2708 -6.5314 1.4151 16 8 1.2476 -7.2454 2.1856 17 6 2.3431 -7.7341 1.5318 18 6 3.1566 -6.5857 0.8893 19 9 3.3216 -5.5525 1.8182 20 9 4.4105 -7.0645 0.4946 21 6 2.4122 -6.0660 -0.3170 22 1 -0.4850 0.8400 0.0004 23 1 0.9209 -2.5291 -1.9983 24 1 2.8719 -3.6043 0.8894 25 1 2.8718 -3.6044 -0.8905 26 1 -0.0919 -4.4361 1.2624 27 1 1.4152 -4.8666 2.0961 28 1 0.1613 -6.9956 0.4349 29 1 -0.6868 -6.5363 1.9357 30 1 2.0179 -8.4231 0.7524 31 1 2.9753 -8.2684 2.2411 32 1 3.1373 -5.7408 -1.0631 33 1 1.8187 -6.8771 -0.7389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930502402.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:28 Heat of formation + Delta-G solvation = -175.633059 kcal Electronic energy + Delta-G solvation = -20017.856856 eV Core-core repulsion = 16522.156723 eV Total energy + Delta-G solvation = -3495.700133 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.95446 -46.97243 -39.56031 -36.93382 -34.76447 -32.08116 -31.67993 -29.65980 -27.31625 -26.44783 -24.11388 -22.03860 -21.27784 -19.95404 -17.80582 -17.67036 -17.12395 -16.89461 -15.98781 -15.23878 -15.07687 -14.60633 -14.53887 -14.14840 -13.75597 -13.57531 -13.47234 -13.18281 -12.92462 -12.52582 -12.27276 -11.91183 -11.53122 -11.42594 -11.13343 -10.94911 -10.76099 -10.63188 -10.48088 -10.05382 -9.73574 -9.02984 -8.57378 -8.16189 -7.77245 -6.01083 -4.19078 3.26949 3.35151 3.38842 3.43742 3.65026 3.98521 4.10770 4.30728 4.41460 4.75098 4.95963 5.18589 5.26530 5.28559 5.31619 5.36556 5.44894 5.70100 6.03082 6.08716 6.25272 6.34268 6.51038 6.78523 7.11697 7.34090 7.39072 7.75373 7.85478 8.19090 8.84715 9.44934 9.61051 11.03203 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.035533 B = 0.006243 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.813546 B = 4483.935043 C = 4810.441200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.574 4.574 8 H 0.055 0.945 9 C 0.238 3.762 10 H 0.055 0.945 11 O -0.555 6.555 12 C 0.024 3.976 13 N -0.513 5.513 14 C 0.008 3.992 15 C 0.057 3.943 16 O -0.370 6.370 17 C 0.051 3.949 18 C 0.215 3.785 19 F -0.187 7.187 20 F -0.201 7.201 21 C 0.005 3.995 22 H 0.260 0.740 23 H 0.343 0.657 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 -14.919 1.089 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.180 3.820 10 H 0.073 0.927 11 O -0.357 6.357 12 C -0.103 4.103 13 N -0.236 5.236 14 C -0.119 4.119 15 C -0.018 4.018 16 O -0.287 6.287 17 C -0.029 4.029 18 C 0.176 3.824 19 F -0.167 7.167 20 F -0.182 7.182 21 C -0.125 4.125 22 H 0.070 0.930 23 H 0.186 0.814 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.969 -14.829 1.397 15.024 hybrid contribution 1.928 1.118 -0.024 2.229 sum 3.897 -13.711 1.373 14.320 Atomic orbital electron populations 1.70087 1.05899 1.26313 1.47154 1.25013 0.94695 0.99088 0.93814 0.86615 0.80234 0.83833 0.77700 1.19741 1.20835 1.20873 1.21678 0.93224 0.91550 1.54752 0.92671 1.19309 0.87747 0.88435 0.86489 0.92744 1.86551 1.37805 1.96290 1.15013 1.23323 0.97552 0.89020 1.00380 1.62390 1.25855 1.01317 1.34025 1.22782 1.00365 0.97206 0.91507 1.22849 0.91269 0.91198 0.96494 1.86536 1.30899 1.72972 1.38324 1.22672 0.88525 0.92655 0.99085 1.23298 0.81756 0.87157 0.90224 1.92989 1.95700 1.60169 1.67891 1.92987 1.44943 1.88807 1.91466 1.23309 0.96689 0.97367 0.95152 0.93043 0.81429 0.94032 0.91818 0.88287 0.91753 0.91272 0.87184 0.91337 0.87156 0.88692 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.35 12.84 55.43 0.71 -24.64 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.57 -15.82 8.76 -34.44 -0.30 -16.13 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.24 5.99 2.70 -27.88 -0.08 5.92 16 10 H 0.05 1.50 6.84 -51.93 -0.36 1.15 16 11 O -0.55 -14.20 12.60 -35.23 -0.44 -14.64 16 12 C 0.02 0.51 4.24 -3.83 -0.02 0.49 16 13 N -0.51 -8.97 4.59 -235.64 -1.08 -10.05 16 14 C 0.01 0.14 4.46 -4.53 -0.02 0.12 16 15 C 0.06 0.72 6.50 36.18 0.24 0.96 16 16 O -0.37 -4.87 9.75 -21.73 -0.21 -5.08 16 17 C 0.05 0.58 6.01 38.06 0.23 0.81 16 18 C 0.21 3.04 2.10 -26.84 -0.06 2.99 16 19 F -0.19 -3.27 12.33 2.25 0.03 -3.24 16 20 F -0.20 -2.87 17.01 2.25 0.04 -2.83 16 21 C 0.00 0.07 4.92 -4.17 -0.02 0.05 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.34 7.89 9.04 45.56 0.41 8.30 16 24 H 0.04 0.91 6.44 -51.93 -0.33 0.57 16 25 H 0.06 1.29 7.71 -51.93 -0.40 0.89 16 26 H 0.10 1.80 7.11 -51.93 -0.37 1.43 16 27 H 0.06 1.17 5.81 -51.93 -0.30 0.87 16 28 H 0.07 0.79 6.78 -51.93 -0.35 0.44 16 29 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.07 0.61 7.72 -51.93 -0.40 0.21 16 31 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.09 1.35 7.51 -51.93 -0.39 0.96 16 33 H 0.09 1.10 6.55 -51.93 -0.34 0.76 16 LS Contribution 268.94 15.07 4.05 4.05 Total: -1.00 -31.19 268.94 -5.27 -36.46 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -3.22 Total: 6.37 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.12 Total: -2.65 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.37 Total: -34.69 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.66 Total: -19.72 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.07 Total: -6.07 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.19 -5.27 -36.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930502402.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.176 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds