Wall clock time and date at job start Mon Mar 30 2020 00:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99673 * 186.42530 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 C 1.53001 * 114.57173 * 272.66123 * 11 10 9 13 13 N 1.46501 * 109.47379 * 268.67262 * 12 11 10 14 14 C 1.34778 * 120.00016 * 179.97438 * 13 12 11 15 15 O 1.21497 * 119.99990 * 359.97438 * 14 13 12 16 16 C 1.48324 * 119.99815 * 180.02562 * 14 13 12 17 17 C 1.42279 * 126.93902 * 179.70814 * 16 14 13 18 18 C 1.35314 * 103.92245 * 179.88959 * 17 16 14 19 19 O 1.34015 * 106.66959 * 0.36941 * 18 17 16 20 20 N 1.20907 * 111.84427 * 359.74785 * 19 18 17 21 21 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 22 22 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 23 23 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 24 24 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 25 25 H 1.08998 * 114.08759 * 139.78710 * 11 10 9 26 26 H 1.09001 * 109.47442 * 28.67369 * 12 11 10 27 27 H 1.08998 * 109.47413 * 148.67312 * 12 11 10 28 28 H 0.96994 * 119.99644 * 0.02562 * 13 12 11 29 29 H 1.07996 * 128.03472 * 0.02562 * 17 16 14 30 30 H 1.08000 * 126.66592 * 180.08710 * 18 17 16 31 31 H 1.08996 * 113.46819 * 321.85844 * 21 9 7 32 32 H 1.09007 * 113.47055 * 92.24673 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0851 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 6 0.8454 -3.9928 -2.4929 13 7 -0.3161 -4.3838 -3.2956 14 6 -0.2378 -4.3789 -4.6411 15 8 0.7958 -4.0498 -5.1883 16 6 -1.4140 -4.7743 -5.4538 17 6 -1.4970 -4.8170 -6.8735 18 6 -2.7605 -5.2375 -7.1133 19 8 -3.3422 -5.4083 -5.9181 20 7 -2.5878 -5.1491 -5.0095 21 6 1.6717 -3.8136 -0.0623 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6458 -2.9419 0.5050 24 1 -0.5617 -2.1435 -1.1235 25 1 -0.0867 -4.9727 -0.7557 26 1 1.1275 -2.9686 -2.7370 27 1 1.6787 -4.6608 -2.7103 28 1 -1.1416 -4.6454 -2.8587 29 1 -0.7291 -4.5728 -7.5926 30 1 -3.2139 -5.3992 -8.0801 31 1 2.6415 -4.0509 -0.4996 32 1 1.5408 -4.2432 0.9310 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031561429.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:08:51 Heat of formation + Delta-G solvation = 63.003999 kcal Electronic energy + Delta-G solvation = -17768.977692 eV Core-core repulsion = 14734.314825 eV Total energy + Delta-G solvation = -3034.662867 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.11624 -40.97595 -39.84605 -35.90263 -35.00344 -34.24157 -32.80402 -30.52147 -28.18635 -26.40131 -25.55531 -24.11880 -23.92986 -21.70183 -20.63820 -19.32928 -18.79150 -18.69890 -17.84950 -17.32612 -16.98353 -16.45561 -15.90815 -15.73065 -15.26585 -14.77562 -14.50878 -14.22229 -14.14381 -13.44820 -13.06512 -12.83259 -12.72954 -12.61834 -12.32926 -11.87030 -11.70364 -11.53759 -11.52167 -11.08346 -10.88134 -10.71028 -10.25242 -8.94897 -7.95922 -5.26711 0.08228 0.80510 1.42048 1.44212 1.53386 1.79356 2.02646 2.35104 2.45075 2.88531 3.28200 3.46807 3.57340 3.71657 3.87591 4.03676 4.27273 4.45527 4.54462 4.68285 4.73805 4.84934 4.92551 5.00280 5.00488 5.19203 5.21433 5.46837 5.53974 5.89231 6.25827 6.87440 6.88995 7.08856 7.57360 8.58524 9.23389 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.029056 B = 0.004710 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.422655 B = 5943.282106 C = 6230.697770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.296 1.296 7 C -0.229 4.229 8 H 0.086 0.914 9 N -0.642 5.642 10 C 0.161 3.839 11 C -0.127 4.127 12 C 0.160 3.840 13 N -0.699 5.699 14 C 0.590 3.410 15 O -0.564 6.564 16 C -0.057 4.057 17 C -0.205 4.205 18 C -0.023 4.023 19 O 0.131 5.869 20 N -0.350 5.350 21 C 0.127 3.873 22 H 0.248 0.752 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.118 0.882 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.414 0.586 29 H 0.190 0.810 30 H 0.282 0.718 31 H 0.056 0.944 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 -14.238 -13.595 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.210 1.210 5 H -0.192 1.192 6 H -0.222 1.222 7 C -0.357 4.357 8 H 0.103 0.897 9 N -0.368 5.368 10 C 0.035 3.965 11 C -0.147 4.147 12 C 0.037 3.963 13 N -0.350 5.350 14 C 0.375 3.625 15 O -0.441 6.441 16 C -0.214 4.214 17 C -0.228 4.228 18 C -0.103 4.103 19 O 0.053 5.947 20 N -0.049 5.049 21 C 0.001 3.999 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.136 0.864 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.251 0.749 29 H 0.208 0.792 30 H 0.298 0.702 31 H 0.074 0.926 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.347 -13.781 -12.638 19.746 hybrid contribution 0.507 1.406 -0.027 1.495 sum -5.840 -12.374 -12.666 18.646 Atomic orbital electron populations 1.70020 1.06562 1.25613 1.58227 1.25646 0.96501 1.00982 1.02963 0.85091 0.77891 0.79174 0.77413 1.21049 1.19160 1.22238 1.19368 0.91048 0.83122 1.42148 0.89671 1.46097 1.06736 1.00847 1.83164 1.22064 0.87763 0.90953 0.95678 1.23059 0.99845 0.99000 0.92778 1.20857 0.87257 0.99518 0.88692 1.45835 1.17180 1.66704 1.05289 1.17286 0.85781 0.77335 0.82121 1.90770 1.31166 1.49765 1.72448 1.23524 0.93858 1.08497 0.95548 1.23075 1.00510 1.06172 0.93083 1.26997 0.92108 0.99158 0.92037 1.84764 1.35830 1.61379 1.12748 1.74202 1.01842 1.14820 1.14048 1.22554 0.96720 0.83872 0.96721 0.94357 0.95795 0.95675 0.86427 0.94063 0.90204 0.74930 0.79237 0.70250 0.92561 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.72 11.81 21.65 0.26 -59.46 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.98 47.30 29.56 68.60 2.03 49.33 16 4 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 7 C -0.23 -13.19 10.73 84.04 0.90 -12.29 16 8 H 0.09 4.69 7.84 -2.91 -0.02 4.67 16 9 N -0.64 -33.38 3.61 -737.95 -2.66 -36.04 16 10 C 0.16 7.66 6.75 83.27 0.56 8.22 16 11 C -0.13 -4.47 4.17 -10.37 -0.04 -4.51 16 12 C 0.16 5.79 5.51 86.38 0.48 6.26 16 13 N -0.70 -22.66 5.55 -465.50 -2.59 -25.25 16 14 C 0.59 20.12 7.85 86.93 0.68 20.80 16 15 O -0.56 -22.86 16.95 -3.70 -0.06 -22.92 16 16 C -0.06 -1.54 7.19 42.96 0.31 -1.23 16 17 C -0.21 -3.82 10.99 22.60 0.25 -3.57 16 18 C -0.02 -0.24 12.28 67.14 0.82 0.59 16 19 O 0.13 2.28 11.18 71.89 0.80 3.08 16 20 N -0.35 -8.61 11.84 -49.51 -0.59 -9.19 16 21 C 0.13 4.94 8.25 83.18 0.69 5.63 16 22 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 23 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.02 1.35 7.56 -2.39 -0.02 1.33 16 25 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 26 H 0.04 1.88 7.93 -2.39 -0.02 1.86 16 27 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.41 11.78 8.23 -92.71 -0.76 11.02 16 29 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.28 -0.71 8.06 -2.91 -0.02 -0.73 16 31 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 32 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -78.31 287.71 2.69 -75.62 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.38 Total: 8.48 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 5.11 Total: 16.36 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -5.58 Total: -129.95 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.74 Total: -19.84 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -78.31 2.69 -75.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031561429.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.621 kcal (2) G-P(sol) polarization free energy of solvation -78.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds