Wall clock time and date at job start Mon Mar 30 2020 00:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48502 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47045 * 300.00033 * 3 2 1 6 6 H 1.48497 * 109.47296 * 60.00050 * 3 2 1 7 7 C 1.38804 * 119.99439 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00124 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00641 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.48817 * 359.97438 * 9 7 2 11 11 C 1.53944 * 86.12022 * 204.64223 * 10 9 7 12 12 C 1.47578 * 134.49751 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.87533 * 269.67502 * 12 9 7 14 14 C 1.53004 * 113.76959 * 41.06004 * 12 9 7 15 15 N 1.46500 * 109.46873 * 281.49698 * 14 12 9 16 16 C 1.34775 * 119.99826 * 180.02562 * 15 14 12 17 17 O 1.21684 * 120.00409 * 359.97438 * 16 15 14 18 18 C 1.46728 * 120.00055 * 179.97438 * 16 15 14 19 19 C 1.36337 * 126.64304 * 180.02562 * 18 16 15 20 20 N 1.33695 * 107.44965 * 179.97438 * 19 18 16 21 21 C 1.30620 * 108.99730 * 359.97438 * 20 19 18 22 22 O 1.33665 * 109.15088 * 0.24955 * 21 20 19 23 23 H 0.96998 * 119.99386 * 0.02562 * 1 2 3 24 24 H 1.09005 * 113.76833 * 90.34438 * 10 9 7 25 25 H 1.08998 * 113.87379 * 318.96063 * 10 9 7 26 26 H 1.08997 * 113.74258 * 222.05190 * 11 10 9 27 27 H 1.08998 * 113.83972 * 90.75036 * 11 10 9 28 28 H 1.08994 * 109.47315 * 161.49452 * 14 12 9 29 29 H 1.08996 * 109.46971 * 41.49139 * 14 12 9 30 30 H 0.96996 * 119.99992 * 359.97438 * 15 14 12 31 31 H 1.07996 * 126.27587 * 359.97438 * 19 18 16 32 32 H 1.08002 * 125.42040 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1034 -2.7573 0.0005 11 6 0.3468 -4.0829 0.6409 12 6 1.7200 -3.8102 0.0005 13 1 1.8325 -4.2368 -0.9961 14 6 2.9022 -4.1222 0.9203 15 7 4.1495 -3.7190 0.2661 16 6 5.3285 -3.9001 0.8934 17 8 5.3571 -4.3980 2.0034 18 6 6.5778 -3.4968 0.2380 19 6 7.8379 -3.6168 0.7445 20 7 8.6851 -3.1322 -0.1693 21 6 8.0040 -2.7238 -1.2063 22 8 6.7020 -2.9299 -0.9846 23 1 -0.4849 0.8401 -0.0004 24 1 -0.5272 -2.8730 -0.9970 25 1 -0.7186 -2.1398 0.6550 26 1 -0.1594 -4.9596 0.2370 27 1 0.3592 -4.0638 1.7307 28 1 2.9295 -5.1921 1.1266 29 1 2.7891 -3.5745 1.8558 30 1 4.1268 -3.3224 -0.6188 31 1 8.1032 -4.0281 1.7072 32 1 8.4254 -2.2850 -2.0987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038562265.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:33 Heat of formation + Delta-G solvation = 46.462563 kcal Electronic energy + Delta-G solvation = -18136.264770 eV Core-core repulsion = 15100.884612 eV Total energy + Delta-G solvation = -3035.380158 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.47779 -39.40939 -37.95190 -35.12458 -34.15168 -32.23882 -30.70464 -28.11551 -27.71975 -24.09849 -23.41947 -22.80775 -21.98628 -20.60149 -19.30307 -18.44143 -17.03898 -16.87644 -16.47168 -15.87202 -15.32139 -14.56932 -14.41215 -14.36353 -13.83614 -13.48236 -13.37099 -13.02689 -11.98816 -11.61018 -11.49469 -11.19215 -11.07739 -10.99568 -10.78947 -10.61247 -10.29675 -9.92235 -9.78556 -9.49996 -9.24450 -8.85152 -8.74238 -6.94750 -5.81401 -3.14229 0.80419 2.36483 2.42560 3.18444 3.33899 3.37208 3.40554 3.42393 4.04039 4.38331 4.83888 4.86391 5.07476 5.32327 5.42519 5.49202 5.55567 5.63185 5.84388 5.97367 6.07460 6.22877 6.33888 6.53123 6.58583 6.71915 7.19966 7.34690 7.35854 7.54913 7.66136 7.93572 8.19627 8.99509 9.66198 10.53646 11.35283 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.007106 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.683067 B = 3939.221359 C = 5031.122425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.125 3.875 13 H 0.051 0.949 14 C 0.121 3.879 15 N -0.697 5.697 16 C 0.601 3.399 17 O -0.526 6.526 18 C -0.097 4.097 19 C 0.042 3.958 20 N -0.497 5.497 21 C 0.194 3.806 22 O -0.187 6.187 23 H 0.253 0.747 24 H 0.027 0.973 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.408 0.592 31 H 0.196 0.804 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.542 -7.998 -2.761 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.193 4.193 12 C 0.017 3.983 13 H 0.068 0.932 14 C -0.003 4.003 15 N -0.346 5.346 16 C 0.385 3.615 17 O -0.405 6.405 18 C -0.153 4.153 19 C -0.101 4.101 20 N -0.225 5.225 21 C -0.031 4.031 22 O -0.072 6.072 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.243 0.757 31 H 0.213 0.787 32 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 10.138 -7.932 -1.977 13.023 hybrid contribution -0.119 1.293 -0.767 1.508 sum 10.018 -6.639 -2.744 12.328 Atomic orbital electron populations 1.69830 1.04956 1.25207 1.56548 1.24757 0.95628 0.97430 1.02464 0.86124 0.78733 0.84033 0.77335 1.20590 1.21719 1.21657 1.18973 0.90131 0.81925 1.43792 0.90413 1.46095 1.02350 0.98504 1.85940 1.22203 0.87888 0.89609 0.96959 1.23773 0.95897 0.99050 1.00628 1.22522 0.92267 0.87840 0.95686 0.93176 1.21923 0.81679 0.99108 0.97603 1.45924 1.05797 1.61451 1.21422 1.16382 0.81143 0.79221 0.84732 1.90870 1.85983 1.45367 1.18242 1.23425 0.98308 1.07504 0.86033 1.23557 0.87058 0.99142 1.00304 1.70427 1.34970 1.15372 1.01781 1.28381 0.76494 0.98162 1.00082 1.84545 1.30629 1.59869 1.32199 0.93682 0.95512 0.90758 0.92693 0.90395 0.91557 0.90389 0.75654 0.78695 0.72944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 11.39 55.49 0.63 -26.07 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.22 -5.87 10.51 -15.06 -0.16 -6.03 16 8 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 9 N -0.60 -14.41 3.57 -170.72 -0.61 -15.02 16 10 C 0.16 3.56 7.51 -2.98 -0.02 3.54 16 11 C -0.15 -2.72 7.86 -25.80 -0.20 -2.92 16 12 C 0.12 2.32 4.33 -66.86 -0.29 2.03 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.12 2.10 5.54 -4.04 -0.02 2.08 16 15 N -0.70 -11.75 5.52 -61.61 -0.34 -12.09 16 16 C 0.60 10.21 7.79 -12.83 -0.10 10.11 16 17 O -0.53 -10.08 16.89 5.20 0.09 -9.99 16 18 C -0.10 -1.44 7.18 -36.84 -0.26 -1.71 16 19 C 0.04 0.57 11.66 -17.43 -0.20 0.37 16 20 N -0.50 -6.39 11.26 -14.67 -0.17 -6.55 16 21 C 0.19 2.02 13.21 52.25 0.69 2.71 16 22 O -0.19 -2.48 10.57 4.43 0.05 -2.43 16 23 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.86 7.16 -51.93 -0.37 1.49 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.41 6.71 8.27 -40.82 -0.34 6.37 16 31 H 0.20 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.25 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 287.63 15.07 4.33 4.33 Total: -1.00 -32.53 287.63 -5.34 -37.87 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -3.63 Total: 3.09 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -0.67 Total: 9.91 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.48 Total: -59.74 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.13 Total: -12.42 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.53 -5.34 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038562265.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.337 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds