Wall clock time and date at job start Sun Mar 29 2020 23:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99767 * 2 1 4 4 H 1.48498 * 109.47061 * 269.99655 * 3 2 1 5 5 H 1.48495 * 109.47155 * 29.99526 * 3 2 1 6 6 H 1.48496 * 109.46823 * 149.99715 * 3 2 1 7 7 C 1.37878 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99653 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00023 * 0.02562 * 7 2 1 10 10 C 1.53515 * 114.17118 * 179.97438 * 9 7 2 11 11 N 1.47476 * 87.93528 * 220.14055 * 10 9 7 12 12 C 1.46898 * 110.99430 * 138.70499 * 11 10 9 13 13 C 1.50710 * 109.46862 * 170.00246 * 12 11 10 14 14 C 1.38243 * 119.95556 * 260.04278 * 13 12 11 15 15 C 1.38129 * 120.08106 * 179.97438 * 14 13 12 16 16 C 1.38775 * 119.99321 * 359.97438 * 15 14 13 17 17 O 1.35905 * 120.04156 * 180.02562 * 16 15 14 18 18 C 1.38663 * 119.91420 * 359.97438 * 16 15 14 19 19 C 1.38389 * 119.92039 * 0.02562 * 18 16 15 20 20 F 1.35096 * 119.99485 * 179.97438 * 19 18 16 21 21 C 1.47481 * 87.83519 * 27.01254 * 11 10 9 22 22 H 0.96998 * 120.00238 * 0.02562 * 1 2 3 23 23 H 1.08993 * 113.26052 * 312.95593 * 9 7 2 24 24 H 1.09009 * 113.47094 * 105.37300 * 10 9 7 25 25 H 1.08993 * 113.53053 * 334.92477 * 10 9 7 26 26 H 1.09004 * 109.47707 * 50.00541 * 12 11 10 27 27 H 1.09003 * 109.47369 * 290.00136 * 12 11 10 28 28 H 1.08002 * 119.96105 * 359.97438 * 14 13 12 29 29 H 1.08009 * 120.00571 * 180.25024 * 15 14 13 30 30 H 0.96702 * 113.99191 * 89.99811 * 17 16 15 31 31 H 1.07995 * 120.03978 * 179.97438 * 18 16 15 32 32 H 1.09003 * 113.47298 * 87.75232 * 21 11 10 33 33 H 1.08999 * 113.47316 * 218.21925 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1498 -3.7437 0.0005 11 7 1.2052 -4.3602 -0.9496 12 6 1.9209 -5.0901 -2.0045 13 6 0.9388 -5.9039 -2.8073 14 6 0.7976 -7.2565 -2.5594 15 6 -0.1022 -8.0047 -3.2932 16 6 -0.8662 -7.3984 -4.2804 17 8 -1.7521 -8.1335 -5.0027 18 6 -0.7252 -6.0414 -4.5282 19 6 0.1774 -5.2952 -3.7908 20 9 0.3164 -3.9731 -4.0313 21 6 0.8520 -2.9993 -1.3949 22 1 -0.4850 0.8400 -0.0004 23 1 0.4447 -2.5305 0.7331 24 1 2.1890 -4.2509 0.9647 25 1 3.1383 -3.5667 -0.4230 26 1 2.6578 -5.7535 -1.5516 27 1 2.4255 -4.3799 -2.6596 28 1 1.3916 -7.7289 -1.7909 29 1 -0.2144 -9.0607 -3.0958 30 1 -2.6381 -8.1715 -4.6171 31 1 -1.3184 -5.5675 -5.2962 32 1 1.4940 -2.6227 -2.1912 33 1 -0.2087 -2.8757 -1.6136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140125153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:17 Heat of formation + Delta-G solvation = -28.498576 kcal Electronic energy + Delta-G solvation = -17976.867911 eV Core-core repulsion = 14918.317233 eV Total energy + Delta-G solvation = -3058.550678 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -48.66978 -39.74786 -38.81823 -36.70229 -32.86066 -31.52041 -30.59482 -28.10326 -25.43735 -24.78091 -22.96927 -22.81737 -21.01965 -18.76043 -18.60919 -16.82087 -16.66102 -16.27180 -15.79513 -15.40661 -14.73984 -14.68736 -14.23699 -13.97908 -13.68759 -13.67762 -13.35164 -12.21733 -12.00619 -11.81736 -11.69382 -11.50386 -11.04467 -10.93168 -10.82816 -10.60341 -10.26847 -9.76743 -9.34349 -8.95352 -8.88185 -8.48415 -8.35402 -8.02058 -6.04432 -4.09063 1.08191 1.18238 3.29624 3.36538 3.39043 3.41274 3.96125 4.41031 4.52819 4.73603 4.81185 4.95654 5.17489 5.25314 5.28014 5.54313 5.66472 5.87482 6.02447 6.03959 6.11010 6.24884 6.34466 6.39701 6.51240 6.66626 6.71445 6.77904 7.15818 7.19099 7.46722 7.72768 7.90561 8.05051 8.37756 8.93914 9.55911 11.05250 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.040594 B = 0.004941 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.589240 B = 5665.550966 C = 6020.935899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.040 3.960 10 C -0.005 4.005 11 N -0.481 5.481 12 C 0.055 3.945 13 C -0.101 4.101 14 C -0.065 4.065 15 C -0.158 4.158 16 C 0.123 3.877 17 O -0.498 6.498 18 C -0.184 4.184 19 C 0.128 3.872 20 F -0.127 7.127 21 C 0.010 3.990 22 H 0.262 0.738 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.392 0.608 31 H 0.138 0.862 32 H 0.056 0.944 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 -14.266 -6.739 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.021 3.979 10 C -0.133 4.133 11 N -0.203 5.203 12 C -0.073 4.073 13 C -0.102 4.102 14 C -0.084 4.084 15 C -0.176 4.176 16 C 0.078 3.922 17 O -0.308 6.308 18 C -0.204 4.204 19 C 0.108 3.892 20 F -0.105 7.105 21 C -0.119 4.119 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.248 0.752 31 H 0.156 0.844 32 H 0.074 0.926 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.078 -14.663 -6.907 16.244 hybrid contribution 0.591 1.667 -0.309 1.795 sum -0.487 -12.996 -7.216 14.874 Atomic orbital electron populations 1.69969 1.06012 1.26747 1.49567 1.25016 0.94808 0.99162 0.94570 0.86617 0.79925 0.83453 0.78153 1.20638 1.21137 1.19810 1.21019 0.92726 0.90241 1.51514 0.92417 1.20110 0.94259 0.90812 0.92697 1.24018 0.95770 0.97726 0.95809 1.68954 1.27012 1.14544 1.09790 1.21572 0.93862 0.97459 0.94417 1.19987 0.99161 0.94798 0.96263 1.20773 0.97264 0.92225 0.98090 1.21387 0.99016 1.00817 0.96423 1.18048 0.93452 0.88551 0.92160 1.84806 1.23774 1.71651 1.50589 1.21319 1.02040 0.94031 1.02981 1.17363 0.97203 0.78224 0.96430 1.91563 1.94473 1.31084 1.93362 1.24125 1.00338 0.86279 1.01167 0.92861 0.91821 0.91862 0.92710 0.90490 0.92803 0.84681 0.85020 0.75230 0.84416 0.92583 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.26 55.43 0.74 -25.07 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.15 8.83 -34.44 -0.30 -14.46 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.04 1.02 3.76 -91.24 -0.34 0.68 16 10 C 0.00 -0.10 7.24 -7.55 -0.05 -0.15 16 11 N -0.48 -9.80 6.32 -246.09 -1.55 -11.35 16 12 C 0.06 0.94 4.72 -4.97 -0.02 0.92 16 13 C -0.10 -1.57 5.47 -104.53 -0.57 -2.14 16 14 C -0.06 -0.83 9.66 -39.62 -0.38 -1.21 16 15 C -0.16 -1.82 9.99 -39.42 -0.39 -2.21 16 16 C 0.12 1.50 6.70 -39.23 -0.26 1.24 16 17 O -0.50 -5.10 13.50 -19.44 -0.26 -5.36 16 18 C -0.18 -2.54 9.97 -39.37 -0.39 -2.94 16 19 C 0.13 2.07 7.22 -39.44 -0.28 1.79 16 20 F -0.13 -2.34 15.06 2.25 0.03 -2.30 16 21 C 0.01 0.23 5.87 -7.55 -0.04 0.18 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 23 H 0.06 1.76 8.11 -51.93 -0.42 1.34 16 24 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 25 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 26 H 0.08 1.13 7.94 -51.93 -0.41 0.72 16 27 H 0.05 0.96 7.10 -51.93 -0.37 0.59 16 28 H 0.14 1.43 8.03 -52.49 -0.42 1.01 16 29 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.39 2.13 9.06 45.56 0.41 2.54 16 31 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.06 1.35 7.19 -51.93 -0.37 0.98 16 33 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 287.72 15.07 4.34 4.34 Total: -1.00 -30.62 287.72 -8.12 -38.74 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.23 Total: 1.39 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -3.16 Total: -16.53 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.82 Total: -36.43 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.26 Total: -5.36 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.03 Total: -2.30 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.62 -8.12 -38.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140125153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.243 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds