Wall clock time and date at job start Sun Mar 29 2020 23:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48494 * 109.47182 * 270.00235 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48505 * 109.47095 * 149.99711 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.39668 * 120.00181 * 180.02562 * 12 11 10 14 14 C 1.38907 * 120.07584 * 359.71907 * 13 12 11 15 15 C 1.38108 * 119.92754 * 179.77093 * 14 13 12 16 16 C 1.38283 * 120.07138 * 0.50866 * 15 14 13 17 17 C 1.50700 * 119.92567 * 179.72344 * 16 15 14 18 18 S 1.81402 * 109.47072 * 270.02505 * 17 16 15 19 19 C 1.38292 * 120.15211 * 359.74911 * 16 15 14 20 20 C 1.38103 * 120.06781 * 359.97438 * 19 16 15 21 21 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 23 23 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 24 24 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 25 25 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 26 26 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 27 27 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 28 28 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 29 29 H 1.08004 * 120.03686 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.96672 * 180.25929 * 15 14 13 31 31 H 1.08997 * 109.47151 * 30.02383 * 17 16 15 32 32 H 1.08997 * 109.47346 * 150.02750 * 17 16 15 33 33 H 1.34500 * 103.00141 * 180.02562 * 18 17 16 34 34 H 1.07994 * 119.96476 * 180.02562 * 19 16 15 35 35 H 1.08003 * 120.03201 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9662 -7.4175 0.0019 14 6 0.6009 -7.6731 0.0073 15 6 0.1438 -8.9763 0.0026 16 6 1.0437 -10.0262 0.0032 17 6 0.5413 -11.4470 0.0044 18 16 0.3395 -12.0156 1.7151 19 6 2.4037 -9.7754 0.0032 20 6 2.8674 -8.4746 0.0021 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8717 -3.6045 0.8906 25 1 2.8717 -3.6045 -0.8894 26 1 0.8530 -5.0451 -0.8886 27 1 0.8535 -5.0445 0.8914 28 1 3.3856 -5.9235 0.0021 29 1 -0.1025 -6.8535 0.0111 30 1 -0.9176 -9.1757 0.0026 31 1 -0.4188 -11.4933 -0.5095 32 1 1.2593 -12.0868 -0.5087 33 1 -0.1055 -13.2759 1.5646 34 1 3.1038 -10.5977 0.0032 35 1 3.9297 -8.2794 0.0025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:54 Heat of formation + Delta-G solvation = 4.955829 kcal Electronic energy + Delta-G solvation = -15058.075742 eV Core-core repulsion = 12567.188932 eV Total energy + Delta-G solvation = -2490.886810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.104 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.46016 -36.32851 -33.83418 -32.17182 -30.83651 -30.47192 -27.14549 -25.33939 -23.50972 -22.25704 -20.86659 -20.30388 -17.69502 -16.99085 -16.47369 -15.70847 -15.26963 -14.85115 -14.57267 -14.50969 -14.11512 -13.74607 -13.33903 -12.89584 -12.80412 -12.31849 -11.84656 -11.77495 -11.53580 -10.95170 -10.95014 -10.68043 -10.62888 -10.58501 -9.99689 -9.58144 -9.49792 -9.15652 -8.85749 -8.39859 -8.22881 -7.19626 -6.04797 -4.07615 1.05552 1.54072 2.03455 2.60203 3.29332 3.35810 3.38734 3.68320 3.99908 4.42592 4.65756 4.67320 5.05637 5.09124 5.25185 5.31323 5.48958 5.57910 5.70393 5.71065 5.86927 6.07940 6.11372 6.38153 6.46629 6.56146 6.62137 6.67854 6.95303 6.95714 7.52463 7.59652 7.72203 7.92669 7.94099 8.35694 8.98911 9.56828 11.06550 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.060688 B = 0.002941 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.266649 B = 9516.880027 C = 9773.167890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.119 3.881 12 N -0.740 5.740 13 C 0.235 3.765 14 C -0.201 4.201 15 C -0.045 4.045 16 C -0.156 4.156 17 C -0.007 4.007 18 S -0.252 6.252 19 C -0.047 4.047 20 C -0.206 4.206 21 H 0.261 0.739 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.398 0.602 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 -21.457 -0.862 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.005 4.005 12 N -0.366 5.366 13 C 0.127 3.873 14 C -0.224 4.224 15 C -0.065 4.065 16 C -0.160 4.160 17 C -0.155 4.155 18 S -0.098 6.098 19 C -0.068 4.068 20 C -0.229 4.229 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.233 0.767 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.037 0.963 34 H 0.137 0.863 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.877 -21.281 0.038 21.364 hybrid contribution 0.502 0.310 -1.040 1.195 sum 2.378 -20.972 -1.002 21.130 Atomic orbital electron populations 1.69959 1.06065 1.26718 1.50613 1.25025 0.94866 0.99320 0.95231 0.86579 0.79833 0.83387 0.78119 1.20641 1.21170 1.19878 1.21208 0.93017 0.90964 1.50908 0.92671 1.19027 0.93833 0.90935 0.97519 1.21849 0.99778 0.93300 1.00908 1.21649 0.92213 0.85803 1.00793 1.45112 1.09119 1.02366 1.80022 1.18008 0.92966 0.84978 0.91311 1.20694 0.93797 0.97216 1.10680 1.20722 0.98920 0.91546 0.95354 1.18741 0.93689 0.92041 1.11485 1.21862 1.04103 0.97025 0.92504 1.87965 1.88878 1.17496 1.15464 1.20641 0.94309 0.95953 0.95848 1.20533 0.98716 0.91739 1.11902 0.92912 0.96360 0.96310 0.92759 0.92787 0.92429 0.92389 0.76729 0.85648 0.86165 0.89558 0.89634 0.96277 0.86304 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 1.93 4.91 -4.04 -0.02 1.91 16 12 N -0.74 -10.39 5.73 -58.63 -0.34 -10.73 16 13 C 0.23 3.18 6.65 -83.79 -0.56 2.62 16 14 C -0.20 -2.67 9.31 -39.38 -0.37 -3.04 16 15 C -0.04 -0.52 9.69 -39.61 -0.38 -0.90 16 16 C -0.16 -1.68 5.14 -104.59 -0.54 -2.22 16 17 C -0.01 -0.06 6.43 36.01 0.23 0.17 16 18 S -0.25 -2.57 25.86 -107.50 -2.78 -5.35 16 19 C -0.05 -0.51 9.69 -39.61 -0.38 -0.89 16 20 C -0.21 -2.45 9.90 -39.38 -0.39 -2.84 16 21 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 27 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 28 H 0.40 5.03 8.49 -40.82 -0.35 4.69 16 29 H 0.13 1.67 6.73 -52.48 -0.35 1.32 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.07 0.64 9.07 97.61 0.89 1.53 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -29.56 311.43 -9.79 -39.34 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -3.98 Total: 1.95 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -3.10 Total: -20.48 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.40 Total: -36.52 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.78 Total: -5.35 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.56 -9.79 -39.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.299 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds