Wall clock time and date at job start Sun Mar 29 2020 23:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86809 * 119.99682 * 2 1 4 4 H 1.48490 * 109.47206 * 275.26238 * 3 2 1 5 5 H 1.48496 * 109.46679 * 35.26407 * 3 2 1 6 6 H 1.48497 * 109.46790 * 155.26076 * 3 2 1 7 7 C 1.40047 * 120.00471 * 180.27676 * 2 1 3 8 8 H 1.07997 * 119.99823 * 173.22025 * 7 2 1 9 9 C 1.41148 * 119.99795 * 353.22527 * 7 2 1 10 10 N 1.33598 * 119.16993 * 5.92019 * 9 7 2 11 11 C 1.31663 * 120.78978 * 179.71853 * 10 9 7 12 12 C 1.40083 * 119.13616 * 0.54521 * 11 10 9 13 13 N 1.38802 * 120.75735 * 179.70653 * 12 11 10 14 14 C 1.46497 * 120.00292 * 0.02725 * 13 12 11 15 15 C 1.50698 * 109.47402 * 180.02562 * 14 13 12 16 16 O 1.20762 * 120.00306 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99977 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.46866 * 179.97438 * 17 15 14 19 19 O 1.42904 * 109.46958 * 179.97438 * 18 17 15 20 20 C 1.40082 * 118.48480 * 359.72916 * 12 11 10 21 21 N 1.31661 * 119.13689 * 0.02562 * 20 12 11 22 22 H 0.96999 * 120.00552 * 359.72045 * 1 2 3 23 23 H 1.07999 * 120.43574 * 180.25455 * 11 10 9 24 24 H 0.97000 * 120.00392 * 180.02562 * 13 12 11 25 25 H 1.09001 * 109.46972 * 299.99677 * 14 13 12 26 26 H 1.09003 * 109.47347 * 59.99484 * 14 13 12 27 27 H 1.08995 * 109.47293 * 299.99777 * 17 15 14 28 28 H 1.08997 * 109.47537 * 60.00149 * 17 15 14 29 29 H 1.09002 * 109.47231 * 299.99959 * 18 17 15 30 30 H 1.09000 * 109.47201 * 60.00074 * 18 17 15 31 31 H 0.96698 * 114.00240 * 180.02562 * 19 18 17 32 32 H 1.07993 * 120.43040 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6179 0.0000 4 1 2.3775 2.1107 -1.3941 5 1 1.4986 2.6180 0.8083 6 1 3.5899 1.4108 0.5859 7 6 2.0076 -1.2128 -0.0059 8 1 3.0819 -1.2154 -0.1163 9 6 1.3093 -2.4316 0.1325 10 7 -0.0265 -2.4186 0.1480 11 6 -0.7101 -3.5373 0.2699 12 6 -0.0184 -4.7489 0.3956 13 7 -0.7051 -5.9474 0.5321 14 6 -2.1700 -5.9550 0.5454 15 6 -2.6636 -7.3699 0.7045 16 8 -1.8734 -8.2784 0.7968 17 6 -4.1435 -7.6511 0.7485 18 6 -4.3721 -9.1549 0.9144 19 8 -5.7754 -9.4215 0.9567 20 6 1.3821 -4.7234 0.3808 21 7 2.0009 -3.5685 0.2505 22 1 -0.4851 0.8400 0.0041 23 1 -1.7899 -3.5206 0.2777 24 1 -0.2151 -6.7801 0.6187 25 1 -2.5289 -5.3496 1.3778 26 1 -2.5440 -5.5425 -0.3917 27 1 -4.5894 -7.1206 1.5898 28 1 -4.6052 -7.3140 -0.1795 29 1 -3.9263 -9.6852 0.0728 30 1 -3.9104 -9.4925 1.8422 31 1 -5.9950 -10.3575 1.0610 32 1 1.9469 -5.6389 0.4758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170099337.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:38 Heat of formation + Delta-G solvation = -34.531400 kcal Electronic energy + Delta-G solvation = -17239.123523 eV Core-core repulsion = 14200.231204 eV Total energy + Delta-G solvation = -3038.892319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.96337 -38.88197 -37.09481 -35.20989 -33.36243 -31.92212 -31.72183 -29.71011 -27.50116 -25.06592 -23.57251 -22.66835 -21.07157 -19.76035 -18.00841 -17.77192 -16.78860 -16.31081 -15.89140 -15.36583 -14.81722 -14.80781 -14.62820 -14.28169 -13.77577 -13.38926 -13.22073 -12.63878 -12.61854 -12.15213 -11.88029 -11.58663 -11.25289 -11.17082 -10.58951 -10.33482 -10.23553 -9.90956 -9.86606 -9.39452 -9.19643 -8.93520 -7.27638 -6.82287 -6.43035 -4.38505 1.74041 2.72356 2.90081 3.12979 3.15713 3.21703 3.34262 3.99266 4.21767 4.37271 4.62282 4.70414 4.75168 5.07052 5.36113 5.42950 5.47563 5.54929 5.57438 5.78338 5.90499 5.99468 6.25192 6.44076 7.07669 7.11167 7.21106 7.28791 7.36954 8.07446 8.27787 8.48368 8.56088 8.73835 9.20186 10.22522 10.38466 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.053919 B = 0.003733 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.176422 B = 7497.946611 C = 7987.751563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.413 4.413 8 H 0.089 0.911 9 C 0.369 3.631 10 N -0.477 5.477 11 C 0.100 3.900 12 C -0.043 4.043 13 N -0.747 5.747 14 C 0.090 3.910 15 C 0.359 3.641 16 O -0.453 6.453 17 C -0.171 4.171 18 C 0.084 3.916 19 O -0.576 6.576 20 C 0.108 3.892 21 N -0.566 5.566 22 H 0.272 0.728 23 H 0.126 0.874 24 H 0.395 0.605 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.383 0.617 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.750 -11.442 1.399 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.156 4.156 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.450 4.450 8 H 0.107 0.893 9 C 0.129 3.871 10 N -0.193 5.193 11 C -0.077 4.077 12 C -0.147 4.147 13 N -0.388 5.388 14 C -0.037 4.037 15 C 0.234 3.766 16 O -0.326 6.326 17 C -0.209 4.209 18 C 0.006 3.994 19 O -0.382 6.382 20 C -0.067 4.067 21 N -0.284 5.284 22 H 0.083 0.917 23 H 0.144 0.856 24 H 0.230 0.770 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.230 0.770 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.169 -10.104 1.264 13.702 hybrid contribution -0.143 -1.031 0.211 1.062 sum -9.312 -11.135 1.475 14.590 Atomic orbital electron populations 1.70138 1.07158 1.27692 1.29897 1.26005 0.94927 1.01065 0.93616 0.86206 0.80543 0.80477 0.78955 1.19535 1.20158 1.18431 1.19096 0.94988 0.87788 1.43104 0.89285 1.19814 0.85513 0.90765 0.91055 1.69271 1.08680 1.25397 1.15996 1.22687 0.98934 0.87454 0.98593 1.19162 0.93579 0.87556 1.14420 1.43297 1.02034 1.06568 1.86897 1.21315 0.84959 0.94381 1.03050 1.24691 0.90561 0.90993 0.70361 1.90377 1.58670 1.47603 1.35982 1.21948 0.95279 0.97433 1.06219 1.21893 0.81501 0.95100 1.00911 1.86420 1.23566 1.31227 1.96997 1.22204 0.89145 0.96377 0.98980 1.68580 1.40430 0.98368 1.21058 0.91733 0.85631 0.76983 0.89688 0.89672 0.87272 0.87274 0.92933 0.92944 0.77015 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.38 11.44 55.55 0.64 -18.74 16 2 C 0.07 1.79 5.49 -17.35 -0.10 1.69 16 3 Si 0.91 19.00 29.57 -169.99 -5.03 13.97 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.41 -11.59 9.35 -37.80 -0.35 -11.94 16 8 H 0.09 2.42 7.86 -52.49 -0.41 2.00 16 9 C 0.37 10.59 7.35 -158.23 -1.16 9.43 16 10 N -0.48 -13.18 7.86 -12.49 -0.10 -13.28 16 11 C 0.10 2.34 10.58 -16.93 -0.18 2.16 16 12 C -0.04 -0.92 6.72 -83.32 -0.56 -1.48 16 13 N -0.75 -12.74 5.68 -59.40 -0.34 -13.08 16 14 C 0.09 1.16 5.35 -5.20 -0.03 1.13 16 15 C 0.36 4.08 7.23 -29.04 -0.21 3.87 16 16 O -0.45 -6.39 15.29 6.00 0.09 -6.30 16 17 C -0.17 -1.48 6.01 -27.88 -0.17 -1.64 16 18 C 0.08 0.74 6.34 37.16 0.24 0.97 16 19 O -0.58 -4.90 13.66 -35.23 -0.48 -5.39 16 20 C 0.11 2.49 11.20 -16.93 -0.19 2.30 16 21 N -0.57 -15.24 10.34 -12.49 -0.13 -15.36 16 22 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 23 H 0.13 2.52 6.88 -52.49 -0.36 2.16 16 24 H 0.39 6.54 7.47 -40.82 -0.30 6.24 16 25 H 0.09 1.03 7.99 -51.93 -0.41 0.62 16 26 H 0.09 1.03 7.99 -51.93 -0.41 0.62 16 27 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.38 1.53 9.12 45.56 0.42 1.95 16 32 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 286.89 15.07 4.32 4.32 Total: -1.00 -33.38 286.89 -6.47 -39.84 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -2.74 Total: 7.52 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -2.71 Total: 6.49 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.07 Total: -60.47 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.39 Total: -11.69 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.38 -6.47 -39.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170099337.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.312 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds