Wall clock time and date at job start Sun Mar 29 2020 23:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86809 * 119.99682 * 2 1 4 4 H 1.48490 * 109.47206 * 275.26238 * 3 2 1 5 5 H 1.48496 * 109.46679 * 35.26407 * 3 2 1 6 6 H 1.48497 * 109.46790 * 155.26076 * 3 2 1 7 7 C 1.40047 * 120.00471 * 180.27676 * 2 1 3 8 8 H 1.07997 * 119.99823 * 173.22025 * 7 2 1 9 9 C 1.41148 * 119.99795 * 353.22527 * 7 2 1 10 10 N 1.33598 * 119.16993 * 5.92019 * 9 7 2 11 11 C 1.31663 * 120.78978 * 179.71853 * 10 9 7 12 12 C 1.40083 * 119.13616 * 0.54521 * 11 10 9 13 13 N 1.38802 * 120.75735 * 179.70653 * 12 11 10 14 14 C 1.46497 * 120.00292 * 0.02725 * 13 12 11 15 15 C 1.50698 * 109.47402 * 180.02562 * 14 13 12 16 16 O 1.20762 * 120.00306 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99977 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.46866 * 179.97438 * 17 15 14 19 19 O 1.42904 * 109.46958 * 179.97438 * 18 17 15 20 20 C 1.40082 * 118.48480 * 359.72916 * 12 11 10 21 21 N 1.31661 * 119.13689 * 0.02562 * 20 12 11 22 22 H 0.96999 * 120.00552 * 359.72045 * 1 2 3 23 23 H 1.07999 * 120.43574 * 180.25455 * 11 10 9 24 24 H 0.97000 * 120.00392 * 180.02562 * 13 12 11 25 25 H 1.09001 * 109.46972 * 299.99677 * 14 13 12 26 26 H 1.09003 * 109.47347 * 59.99484 * 14 13 12 27 27 H 1.08995 * 109.47293 * 299.99777 * 17 15 14 28 28 H 1.08997 * 109.47537 * 60.00149 * 17 15 14 29 29 H 1.09002 * 109.47231 * 299.99959 * 18 17 15 30 30 H 1.09000 * 109.47201 * 60.00074 * 18 17 15 31 31 H 0.96698 * 114.00240 * 180.02562 * 19 18 17 32 32 H 1.07993 * 120.43040 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6179 0.0000 4 1 2.3775 2.1107 -1.3941 5 1 1.4986 2.6180 0.8083 6 1 3.5899 1.4108 0.5859 7 6 2.0076 -1.2128 -0.0059 8 1 3.0819 -1.2154 -0.1163 9 6 1.3093 -2.4316 0.1325 10 7 -0.0265 -2.4186 0.1480 11 6 -0.7101 -3.5373 0.2699 12 6 -0.0184 -4.7489 0.3956 13 7 -0.7051 -5.9474 0.5321 14 6 -2.1700 -5.9550 0.5454 15 6 -2.6636 -7.3699 0.7045 16 8 -1.8734 -8.2784 0.7968 17 6 -4.1435 -7.6511 0.7485 18 6 -4.3721 -9.1549 0.9144 19 8 -5.7754 -9.4215 0.9567 20 6 1.3821 -4.7234 0.3808 21 7 2.0009 -3.5685 0.2505 22 1 -0.4851 0.8400 0.0041 23 1 -1.7899 -3.5206 0.2777 24 1 -0.2151 -6.7801 0.6187 25 1 -2.5289 -5.3496 1.3778 26 1 -2.5440 -5.5425 -0.3917 27 1 -4.5894 -7.1206 1.5898 28 1 -4.6052 -7.3140 -0.1795 29 1 -3.9263 -9.6852 0.0728 30 1 -3.9104 -9.4925 1.8422 31 1 -5.9950 -10.3575 1.0610 32 1 1.9469 -5.6389 0.4758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170099337.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:37 Heat of formation + Delta-G solvation = -61.163535 kcal Electronic energy + Delta-G solvation = -17240.278380 eV Core-core repulsion = 14200.231204 eV Total energy + Delta-G solvation = -3040.047175 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12377 -40.58417 -37.76415 -36.76203 -35.19864 -33.66545 -32.74567 -31.31505 -28.99527 -26.70064 -24.99993 -24.09721 -22.76660 -20.72273 -19.73443 -18.85366 -18.11372 -17.35537 -17.12382 -17.12151 -16.26017 -16.04532 -15.74596 -15.67183 -14.98940 -14.76948 -14.47028 -14.30737 -13.94238 -13.55492 -12.99582 -12.89702 -12.86130 -12.54372 -12.23746 -11.93102 -11.55584 -11.35907 -11.16016 -10.96301 -10.80356 -10.74452 -9.22767 -8.54371 -8.32417 -6.33696 0.83210 0.87362 1.01293 1.44362 1.54003 1.60576 2.28159 2.40293 2.84796 2.99058 3.64816 3.85514 3.96325 4.03116 4.06593 4.12192 4.33065 4.38573 4.45291 4.48637 4.62615 4.72439 4.86542 4.90799 5.18757 5.32012 5.54019 6.24375 6.31307 6.49910 6.57999 6.79601 6.83011 6.96936 7.31198 8.29345 8.50792 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.053919 B = 0.003733 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.176422 B = 7497.946611 C = 7987.751563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.027 3.973 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.338 3.662 10 N -0.506 5.506 11 C 0.082 3.918 12 C -0.010 4.010 13 N -0.741 5.741 14 C 0.077 3.923 15 C 0.372 3.628 16 O -0.483 6.483 17 C -0.165 4.165 18 C 0.084 3.916 19 O -0.589 6.589 20 C 0.085 3.915 21 N -0.591 5.591 22 H 0.280 0.720 23 H 0.158 0.842 24 H 0.399 0.601 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.401 0.599 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -11.910 1.573 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.194 4.194 3 Si 0.813 3.187 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.098 0.902 9 C 0.095 3.905 10 N -0.223 5.223 11 C -0.094 4.094 12 C -0.116 4.116 13 N -0.380 5.380 14 C -0.048 4.048 15 C 0.249 3.751 16 O -0.358 6.358 17 C -0.202 4.202 18 C 0.006 3.994 19 O -0.397 6.397 20 C -0.089 4.089 21 N -0.310 5.310 22 H 0.091 0.909 23 H 0.175 0.825 24 H 0.235 0.765 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.251 0.749 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.694 -10.667 1.445 15.174 hybrid contribution 0.172 -1.173 0.177 1.198 sum -10.522 -11.840 1.622 15.923 Atomic orbital electron populations 1.70194 1.08587 1.29137 1.30542 1.26877 0.95856 1.04146 0.92545 0.85040 0.78809 0.75457 0.79380 1.18561 1.18786 1.18530 1.19347 0.94920 0.89231 1.45975 0.90154 1.20120 0.86345 0.91536 0.92503 1.69203 1.08544 1.27474 1.17078 1.23204 1.00370 0.87182 0.98651 1.19146 0.93240 0.88656 1.10566 1.43407 1.04032 1.05089 1.85442 1.21674 0.82225 0.96308 1.04567 1.24765 0.91682 0.89595 0.69029 1.90387 1.59674 1.48118 1.37665 1.21919 0.92838 0.97703 1.07735 1.21834 0.81741 0.95132 1.00649 1.86368 1.23156 1.33236 1.96986 1.22746 0.90493 0.96428 0.99197 1.68554 1.41354 0.99177 1.21927 0.90929 0.82455 0.76487 0.88068 0.88026 0.85625 0.85615 0.93272 0.93292 0.74880 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.24 11.44 21.84 0.25 -40.99 16 2 C 0.03 1.43 5.49 85.30 0.47 1.90 16 3 Si 0.99 39.44 29.57 68.60 2.03 41.47 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.46 -26.62 9.35 23.42 0.22 -26.40 16 8 H 0.08 4.58 7.86 -2.91 -0.02 4.55 16 9 C 0.34 19.95 7.35 134.95 0.99 20.94 16 10 N -0.51 -28.39 7.86 -193.42 -1.52 -29.91 16 11 C 0.08 3.75 10.58 85.17 0.90 4.65 16 12 C -0.01 -0.42 6.72 38.93 0.26 -0.15 16 13 N -0.74 -23.54 5.68 -341.86 -1.94 -25.48 16 14 C 0.08 1.77 5.35 85.63 0.46 2.23 16 15 C 0.37 7.43 7.23 29.10 0.21 7.64 16 16 O -0.48 -12.67 15.29 -1.45 -0.02 -12.69 16 17 C -0.16 -2.31 6.01 29.85 0.18 -2.13 16 18 C 0.08 1.28 6.34 71.98 0.46 1.74 16 19 O -0.59 -8.51 13.66 -148.98 -2.04 -10.54 16 20 C 0.08 3.90 11.20 85.17 0.95 4.86 16 21 N -0.59 -32.53 10.34 -193.43 -2.00 -34.53 16 22 H 0.28 13.56 8.29 -92.71 -0.77 12.79 16 23 H 0.16 5.98 6.88 -2.91 -0.02 5.96 16 24 H 0.40 12.35 7.47 -92.71 -0.69 11.66 16 25 H 0.10 2.10 7.99 -2.39 -0.02 2.08 16 26 H 0.10 2.10 7.99 -2.39 -0.02 2.08 16 27 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 30 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.40 2.29 9.12 -74.06 -0.68 1.61 16 32 H 0.16 6.03 8.06 -2.91 -0.02 6.01 16 Total: -1.00 -73.82 286.89 -0.34 -74.16 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.20 Total: 23.25 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 5.10 Total: 15.28 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -5.21 Total: -130.92 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -2.06 Total: -23.23 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -73.82 -0.34 -74.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170099337.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.992 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds