Wall clock time and date at job start Sun Mar 29 2020 23:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99905 * 2 1 4 4 H 1.48497 * 109.46999 * 270.00401 * 3 2 1 5 5 H 1.48508 * 109.46842 * 30.00063 * 3 2 1 6 6 H 1.48495 * 109.47146 * 149.99820 * 3 2 1 7 7 C 1.37871 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99574 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00128 * 180.02562 * 7 2 1 10 10 C 1.53521 * 114.16689 * 179.97438 * 9 7 2 11 11 N 1.47486 * 87.92805 * 220.13670 * 10 9 7 12 12 C 1.46901 * 110.99364 * 138.70668 * 11 10 9 13 13 C 1.50706 * 109.46848 * 170.00292 * 12 11 10 14 14 C 1.38303 * 119.98103 * 259.99524 * 13 12 11 15 15 C 1.38221 * 120.12208 * 179.97438 * 14 13 12 16 16 C 1.38217 * 120.09832 * 0.02562 * 15 14 13 17 17 C 1.38624 * 119.96893 * 359.96953 * 16 15 14 18 18 O 1.35953 * 120.06414 * 180.02562 * 17 16 15 19 19 C 1.38286 * 119.98896 * 79.72205 * 13 12 11 20 20 F 1.35101 * 120.04454 * 0.02562 * 19 13 12 21 21 C 1.47481 * 87.83644 * 27.01437 * 11 10 9 22 22 H 0.96999 * 120.00370 * 0.02562 * 1 2 3 23 23 H 1.08999 * 113.25858 * 312.95083 * 9 7 2 24 24 H 1.09003 * 113.47652 * 105.37762 * 10 9 7 25 25 H 1.08995 * 113.53424 * 334.91307 * 10 9 7 26 26 H 1.08995 * 109.47466 * 50.00134 * 12 11 10 27 27 H 1.08999 * 109.47282 * 289.99583 * 12 11 10 28 28 H 1.08001 * 119.93869 * 359.97438 * 14 13 12 29 29 H 1.08001 * 119.94868 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.01703 * 179.97438 * 16 15 14 31 31 H 0.96696 * 113.99942 * 90.00078 * 18 17 16 32 32 H 1.08997 * 113.47684 * 87.75069 * 21 11 10 33 33 H 1.08998 * 113.47468 * 218.21959 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.1401 -2.5945 0.0000 11 7 5.1459 -2.0847 0.9506 12 6 5.4199 -3.0697 2.0054 13 6 6.6154 -2.6260 2.8087 14 6 7.8581 -3.1806 2.5622 15 6 8.9566 -2.7754 3.2968 16 6 8.8165 -1.8149 4.2808 17 6 7.5727 -1.2564 4.5311 18 8 7.4327 -0.3111 5.4981 19 6 6.4703 -1.6606 3.7881 20 9 5.2574 -1.1151 4.0258 21 6 4.1438 -1.0985 1.3957 22 1 -0.4850 0.8400 -0.0004 23 1 3.9422 -0.5111 -0.7323 24 1 4.5601 -2.8819 -0.9639 25 1 3.4924 -3.3622 0.4232 26 1 5.6261 -4.0394 1.5525 27 1 4.5524 -3.1517 2.6603 28 1 7.9705 -3.9316 1.7942 29 1 9.9257 -3.2106 3.1022 30 1 9.6756 -1.4996 4.8542 31 1 7.5566 0.5948 5.1835 32 1 3.4964 -1.4664 2.1917 33 1 4.5668 -0.1182 1.6147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233049719.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:21 Heat of formation + Delta-G solvation = -24.787375 kcal Electronic energy + Delta-G solvation = -18236.582192 eV Core-core repulsion = 15178.192444 eV Total energy + Delta-G solvation = -3058.389748 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.70550 -39.74695 -38.97586 -36.89731 -32.97890 -31.96855 -29.71410 -28.90107 -25.87204 -25.04632 -22.93197 -22.66288 -21.04809 -18.69966 -18.36850 -17.37244 -17.07428 -16.52144 -16.00523 -15.32105 -14.84628 -14.58197 -14.40450 -14.00998 -13.65751 -13.47261 -13.28617 -12.62835 -12.21761 -12.03615 -11.85577 -11.74458 -11.43878 -11.01961 -10.64892 -10.36194 -9.96818 -9.94582 -9.65544 -9.13889 -8.78466 -8.62531 -8.53746 -8.19724 -6.10544 -4.10953 1.01888 1.09033 3.30009 3.36818 3.38451 3.44008 3.93266 4.34272 4.42608 4.59356 4.76446 4.89954 5.08103 5.15758 5.19070 5.39170 5.58130 5.77890 5.90324 5.96171 6.00576 6.12252 6.15398 6.30062 6.33477 6.42843 6.48808 6.65762 6.77736 6.94692 7.34079 7.46236 7.67234 7.80364 8.48285 8.92179 9.52607 11.01974 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.029731 B = 0.006216 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.563060 B = 4503.611217 C = 5045.360314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.511 4.511 8 H 0.074 0.926 9 C -0.001 4.001 10 C 0.010 3.990 11 N -0.480 5.480 12 C 0.054 3.946 13 C -0.081 4.081 14 C -0.088 4.088 15 C -0.118 4.118 16 C -0.126 4.126 17 C 0.067 3.933 18 O -0.490 6.490 19 C 0.085 3.915 20 F -0.125 7.125 21 C -0.006 4.006 22 H 0.264 0.736 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.391 0.609 32 H 0.067 0.933 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.764 -4.013 6.916 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.119 4.119 11 N -0.202 5.202 12 C -0.074 4.074 13 C -0.083 4.083 14 C -0.107 4.107 15 C -0.136 4.136 16 C -0.144 4.144 17 C 0.022 3.978 18 O -0.300 6.300 19 C 0.065 3.935 20 F -0.103 7.103 21 C -0.135 4.135 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.247 0.753 32 H 0.086 0.914 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.104 -4.168 7.084 19.883 hybrid contribution -0.496 1.151 0.252 1.279 sum 17.608 -3.017 7.336 19.312 Atomic orbital electron populations 1.69906 1.06399 1.27124 1.50162 1.24998 0.94632 0.99215 0.93931 0.86883 0.80834 0.83472 0.78623 1.20278 1.21455 1.18183 1.20901 0.88181 0.94538 1.51258 0.90767 1.20523 0.96306 0.92675 0.92506 1.23810 0.92354 0.99633 0.96068 1.68935 1.31904 1.09471 1.09894 1.21594 0.94396 0.97111 0.94342 1.19897 0.96987 0.96020 0.95371 1.20965 0.90858 0.99789 0.99092 1.21032 0.99096 0.97607 0.95874 1.21242 0.95948 0.98607 0.98654 1.18432 0.91839 0.95670 0.91874 1.84854 1.93708 1.18167 1.33300 1.18050 0.81164 0.97052 0.97243 1.91540 1.41265 1.84055 1.93442 1.24457 0.92135 0.95748 1.01166 0.92582 0.92615 0.91350 0.91920 0.90050 0.92435 0.84854 0.85071 0.84792 0.75339 0.91448 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.55 27.14 -169.99 -4.61 16.93 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.11 5.68 56.52 0.32 -5.79 16 7 C -0.51 -14.21 9.38 -34.44 -0.32 -14.53 16 8 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16 9 C 0.00 -0.02 2.95 -91.24 -0.27 -0.28 16 10 C 0.01 0.19 7.25 -7.53 -0.05 0.14 16 11 N -0.48 -9.20 6.32 -246.05 -1.55 -10.75 16 12 C 0.05 0.88 4.72 -4.97 -0.02 0.85 16 13 C -0.08 -1.21 5.47 -104.58 -0.57 -1.78 16 14 C -0.09 -1.05 9.66 -39.56 -0.38 -1.43 16 15 C -0.12 -1.19 10.04 -39.60 -0.40 -1.59 16 16 C -0.13 -1.37 9.98 -39.45 -0.39 -1.76 16 17 C 0.07 0.91 6.71 -39.18 -0.26 0.65 16 18 O -0.49 -6.16 13.37 -19.59 -0.26 -6.42 16 19 C 0.09 1.36 7.23 -39.30 -0.28 1.07 16 20 F -0.12 -2.29 14.90 2.25 0.03 -2.26 16 21 C -0.01 -0.13 5.26 -7.54 -0.04 -0.17 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.06 1.33 7.04 -51.93 -0.37 0.97 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.06 1.24 7.87 -51.93 -0.41 0.83 16 26 H 0.08 1.13 7.94 -51.93 -0.41 0.72 16 27 H 0.06 1.00 7.11 -51.93 -0.37 0.63 16 28 H 0.13 1.30 8.04 -52.49 -0.42 0.88 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.39 3.17 9.06 45.56 0.41 3.58 16 32 H 0.07 1.55 7.19 -51.93 -0.37 1.17 16 33 H 0.06 1.38 7.11 -51.93 -0.37 1.01 16 LS Contribution 281.68 15.07 4.24 4.24 Total: -1.00 -31.88 281.68 -7.69 -39.57 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -3.21 Total: 2.03 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -3.10 Total: -16.79 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.78 Total: -37.32 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.26 Total: -6.42 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.03 Total: -2.26 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.61 Total: 16.93 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.88 -7.69 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233049719.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.785 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds