Wall clock time and date at job start Sun Mar 29 2020 23:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99905 * 2 1 4 4 H 1.48497 * 109.46999 * 270.00401 * 3 2 1 5 5 H 1.48508 * 109.46842 * 30.00063 * 3 2 1 6 6 H 1.48495 * 109.47146 * 149.99820 * 3 2 1 7 7 C 1.37871 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99574 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00128 * 180.02562 * 7 2 1 10 10 C 1.53521 * 114.16689 * 179.97438 * 9 7 2 11 11 N 1.47486 * 87.92805 * 220.13670 * 10 9 7 12 12 C 1.46901 * 110.99364 * 138.70668 * 11 10 9 13 13 C 1.50706 * 109.46848 * 170.00292 * 12 11 10 14 14 C 1.38303 * 119.98103 * 259.99524 * 13 12 11 15 15 C 1.38221 * 120.12208 * 179.97438 * 14 13 12 16 16 C 1.38217 * 120.09832 * 0.02562 * 15 14 13 17 17 C 1.38624 * 119.96893 * 359.96953 * 16 15 14 18 18 O 1.35953 * 120.06414 * 180.02562 * 17 16 15 19 19 C 1.38286 * 119.98896 * 79.72205 * 13 12 11 20 20 F 1.35101 * 120.04454 * 0.02562 * 19 13 12 21 21 C 1.47481 * 87.83644 * 27.01437 * 11 10 9 22 22 H 0.96999 * 120.00370 * 0.02562 * 1 2 3 23 23 H 1.08999 * 113.25858 * 312.95083 * 9 7 2 24 24 H 1.09003 * 113.47652 * 105.37762 * 10 9 7 25 25 H 1.08995 * 113.53424 * 334.91307 * 10 9 7 26 26 H 1.08995 * 109.47466 * 50.00134 * 12 11 10 27 27 H 1.08999 * 109.47282 * 289.99583 * 12 11 10 28 28 H 1.08001 * 119.93869 * 359.97438 * 14 13 12 29 29 H 1.08001 * 119.94868 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.01703 * 179.97438 * 16 15 14 31 31 H 0.96696 * 113.99942 * 90.00078 * 18 17 16 32 32 H 1.08997 * 113.47684 * 87.75069 * 21 11 10 33 33 H 1.08998 * 113.47468 * 218.21959 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.1401 -2.5945 0.0000 11 7 5.1459 -2.0847 0.9506 12 6 5.4199 -3.0697 2.0054 13 6 6.6154 -2.6260 2.8087 14 6 7.8581 -3.1806 2.5622 15 6 8.9566 -2.7754 3.2968 16 6 8.8165 -1.8149 4.2808 17 6 7.5727 -1.2564 4.5311 18 8 7.4327 -0.3111 5.4981 19 6 6.4703 -1.6606 3.7881 20 9 5.2574 -1.1151 4.0258 21 6 4.1438 -1.0985 1.3957 22 1 -0.4850 0.8400 -0.0004 23 1 3.9422 -0.5111 -0.7323 24 1 4.5601 -2.8819 -0.9639 25 1 3.4924 -3.3622 0.4232 26 1 5.6261 -4.0394 1.5525 27 1 4.5524 -3.1517 2.6603 28 1 7.9705 -3.9316 1.7942 29 1 9.9257 -3.2106 3.1022 30 1 9.6756 -1.4996 4.8542 31 1 7.5566 0.5948 5.1835 32 1 3.4964 -1.4664 2.1917 33 1 4.5668 -0.1182 1.6147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233049719.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:21 Heat of formation + Delta-G solvation = -49.555893 kcal Electronic energy + Delta-G solvation = -18237.656236 eV Core-core repulsion = 15178.192444 eV Total energy + Delta-G solvation = -3059.463792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.92594 -41.04184 -40.25316 -37.87227 -34.87589 -33.42842 -30.69882 -30.40059 -27.50419 -26.74896 -24.44972 -23.62084 -22.27445 -20.50349 -19.41665 -19.11239 -18.36128 -17.64316 -17.22333 -16.83377 -16.26787 -16.04032 -15.49333 -15.39535 -15.31266 -14.71500 -14.67852 -14.43872 -13.50263 -13.35152 -13.22660 -13.02195 -12.84292 -12.61334 -12.15753 -11.91008 -11.77574 -11.52924 -11.45537 -11.13060 -10.68119 -9.93769 -9.70319 -9.59999 -8.32535 -6.37200 0.09700 0.12829 1.33677 1.36361 1.48892 2.34423 2.45576 3.00498 3.01958 3.28146 3.37258 3.61327 3.85291 4.05923 4.12433 4.24483 4.25742 4.39828 4.50923 4.63264 4.67265 4.80419 4.85710 4.98048 5.04761 5.08813 5.27196 5.35912 5.41704 5.45048 5.60660 5.79543 6.16040 6.26360 6.65994 6.68250 7.29711 8.83572 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.029731 B = 0.006216 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.563060 B = 4503.611217 C = 5045.360314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.017 3.983 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.245 1.245 7 C -0.514 4.514 8 H 0.036 0.964 9 C -0.016 4.016 10 C 0.020 3.980 11 N -0.468 5.468 12 C 0.055 3.945 13 C -0.102 4.102 14 C -0.087 4.087 15 C -0.101 4.101 16 C -0.118 4.118 17 C 0.059 3.941 18 O -0.503 6.503 19 C 0.042 3.958 20 F -0.152 7.152 21 C 0.007 3.993 22 H 0.267 0.733 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.109 0.891 27 H 0.037 0.963 28 H 0.158 0.842 29 H 0.174 0.826 30 H 0.165 0.835 31 H 0.408 0.592 32 H 0.048 0.952 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.698 -4.270 6.867 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.168 1.168 7 C -0.552 4.552 8 H 0.055 0.945 9 C -0.035 4.035 10 C -0.109 4.109 11 N -0.190 5.190 12 C -0.073 4.073 13 C -0.103 4.103 14 C -0.105 4.105 15 C -0.119 4.119 16 C -0.136 4.136 17 C 0.013 3.987 18 O -0.316 6.316 19 C 0.022 3.978 20 F -0.131 7.131 21 C -0.122 4.122 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.127 0.873 27 H 0.055 0.945 28 H 0.176 0.824 29 H 0.191 0.809 30 H 0.182 0.818 31 H 0.266 0.734 32 H 0.066 0.934 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 22.063 -4.431 7.031 23.576 hybrid contribution -1.658 1.125 0.315 2.029 sum 20.405 -3.306 7.347 21.937 Atomic orbital electron populations 1.70045 1.08237 1.28184 1.52187 1.25864 0.95364 1.03099 0.93737 0.85853 0.79839 0.78720 0.79288 1.18944 1.21390 1.16812 1.21140 0.90617 0.93098 1.50325 0.94535 1.20544 0.93601 0.95664 0.93719 1.23689 0.92289 0.97315 0.97565 1.68870 1.30115 1.09588 1.10428 1.21603 0.94725 0.97513 0.93479 1.19894 0.97634 0.97108 0.95701 1.21302 0.89907 0.99693 0.99605 1.21519 1.00215 0.96094 0.94090 1.21639 0.95547 0.97829 0.98585 1.18679 0.92183 0.96121 0.91694 1.84799 1.93874 1.19341 1.33581 1.18565 0.81035 0.98792 0.99386 1.91458 1.43039 1.84739 1.93868 1.24117 0.92489 0.96372 0.99262 0.92439 0.92197 0.88883 0.92344 0.87288 0.94495 0.82403 0.80897 0.81787 0.73390 0.93411 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 2 C 0.02 1.01 5.47 84.65 0.46 1.47 16 3 Si 0.94 44.93 27.14 68.60 1.86 46.79 16 4 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.24 -11.08 5.68 99.48 0.56 -10.52 16 7 C -0.51 -29.47 9.38 25.60 0.24 -29.23 16 8 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 9 C -0.02 -0.75 2.95 -11.19 -0.03 -0.78 16 10 C 0.02 0.77 7.25 83.58 0.61 1.38 16 11 N -0.47 -17.40 6.32 -932.38 -5.89 -23.29 16 12 C 0.05 1.73 4.72 85.56 0.40 2.13 16 13 C -0.10 -2.88 5.47 -19.84 -0.11 -2.99 16 14 C -0.09 -1.72 9.66 22.28 0.22 -1.50 16 15 C -0.10 -1.54 10.04 22.26 0.22 -1.32 16 16 C -0.12 -2.09 9.98 22.36 0.22 -1.87 16 17 C 0.06 1.49 6.71 22.53 0.15 1.64 16 18 O -0.50 -12.06 13.37 -93.02 -1.24 -13.30 16 19 C 0.04 1.33 7.23 22.45 0.16 1.49 16 20 F -0.15 -5.81 14.90 44.97 0.67 -5.14 16 21 C 0.01 0.31 5.26 83.58 0.44 0.75 16 22 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 23 H 0.06 2.79 7.04 -2.39 -0.02 2.78 16 24 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 25 H 0.06 2.32 7.87 -2.39 -0.02 2.30 16 26 H 0.11 2.78 7.94 -2.39 -0.02 2.76 16 27 H 0.04 1.31 7.11 -2.39 -0.02 1.29 16 28 H 0.16 2.31 8.04 -2.91 -0.02 2.28 16 29 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.41 6.16 9.06 -74.06 -0.67 5.49 16 32 H 0.05 2.28 7.19 -2.39 -0.02 2.27 16 33 H 0.05 2.46 7.11 -2.39 -0.02 2.45 16 Total: -1.00 -71.77 281.68 -1.00 -72.76 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.32 Total: 10.27 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 2.99 Total: -28.83 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -5.59 Total: -82.56 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -1.24 Total: -13.30 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.67 Total: -5.14 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.86 Total: 46.79 kcal Total: -71.77 -1.00 -72.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233049719.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.207 kcal (2) G-P(sol) polarization free energy of solvation -71.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds