Wall clock time and date at job start Sun Mar 29 2020 23:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 120.00452 * 2 1 4 4 H 1.48491 * 109.47107 * 239.99787 * 3 2 1 5 5 H 1.48498 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47111 * 119.99441 * 3 2 1 7 7 C 1.40046 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99838 * 197.02769 * 7 2 1 9 9 C 1.41527 * 120.00435 * 17.02352 * 7 2 1 10 10 C 1.41190 * 120.97590 * 203.29149 * 9 7 2 11 11 C 1.37755 * 119.15136 * 180.02562 * 10 9 7 12 12 N 1.31884 * 121.20702 * 359.97438 * 11 10 9 13 13 C 1.33077 * 122.16927 * 0.02562 * 12 11 10 14 14 C 1.47341 * 119.65803 * 179.97438 * 13 12 11 15 15 C 1.34280 * 119.99700 * 0.02562 * 14 13 12 16 16 C 1.47387 * 119.99932 * 180.02562 * 15 14 13 17 17 C 1.39742 * 120.16150 * 179.97438 * 16 15 14 18 18 C 1.37914 * 119.83379 * 179.97438 * 17 16 15 19 19 C 1.38382 * 120.16273 * 359.97438 * 18 17 16 20 20 C 1.38377 * 120.32647 * 0.02562 * 19 18 17 21 21 C 1.37917 * 120.16344 * 0.02562 * 20 19 18 22 22 C 1.39340 * 120.68519 * 0.25173 * 13 12 11 23 23 H 0.97001 * 119.99741 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.41997 * 0.04511 * 10 9 7 25 25 H 1.08001 * 119.40059 * 179.97438 * 11 10 9 26 26 H 1.08001 * 119.99998 * 179.97438 * 14 13 12 27 27 H 1.08001 * 120.00393 * 359.97438 * 15 14 13 28 28 H 1.07999 * 120.08384 * 359.97438 * 17 16 15 29 29 H 1.08007 * 119.91605 * 179.97438 * 18 17 16 30 30 H 1.07996 * 119.83241 * 179.74492 * 19 18 17 31 31 H 1.08005 * 119.91766 * 180.02562 * 20 19 18 32 32 H 1.08008 * 120.08235 * 180.02562 * 21 20 19 33 33 H 1.08000 * 120.62998 * 179.74916 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6962 -1.2124 5 1 1.2765 2.7464 -0.0006 6 1 3.0951 1.6963 1.2126 7 6 2.0075 -1.2129 0.0005 8 1 3.0520 -1.2333 0.2745 9 6 1.3464 -2.4119 -0.3577 10 6 1.8274 -3.6654 0.0791 11 6 1.1548 -4.8087 -0.2924 12 7 0.0736 -4.7513 -1.0455 13 6 -0.4233 -3.5977 -1.4850 14 6 -1.6345 -3.5980 -2.3241 15 6 -2.2313 -4.7584 -2.6410 16 6 -3.4425 -4.7589 -3.4808 17 6 -4.0660 -5.9645 -3.8132 18 6 -5.1994 -5.9570 -4.5989 19 6 -5.7196 -4.7595 -5.0576 20 6 -5.1075 -3.5617 -4.7325 21 6 -3.9729 -3.5536 -3.9485 22 6 0.1933 -2.3899 -1.1648 23 1 -0.4850 0.8401 -0.0004 24 1 2.7111 -3.7269 0.6968 25 1 1.5194 -5.7697 0.0391 26 1 -2.0427 -2.6650 -2.6834 27 1 -1.8233 -5.6915 -2.2813 28 1 -3.6614 -6.8998 -3.4556 29 1 -5.6821 -6.8881 -4.8570 30 1 -6.6049 -4.7601 -5.6760 31 1 -5.5194 -2.6309 -5.0937 32 1 -3.4966 -2.6180 -3.6952 33 1 -0.2085 -1.4544 -1.5253 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239591703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:50 Heat of formation + Delta-G solvation = 40.765308 kcal Electronic energy + Delta-G solvation = -16323.003584 eV Core-core repulsion = 13698.225638 eV Total energy + Delta-G solvation = -2624.777946 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.101 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.31609 -39.84316 -36.21424 -35.26973 -32.60505 -32.02996 -31.77883 -29.19605 -27.92598 -24.77383 -23.71242 -23.37708 -22.34795 -20.53500 -18.89836 -18.03664 -17.31273 -16.47071 -16.33805 -16.06771 -15.79634 -15.33164 -14.66958 -14.46061 -14.32932 -14.16221 -13.87227 -13.80191 -13.23839 -12.96256 -12.79591 -12.67140 -12.10396 -11.99789 -11.78454 -11.67938 -11.47735 -11.20844 -10.04207 -9.93255 -9.83758 -9.81820 -8.76959 -8.53751 -6.59864 -0.27458 0.53342 0.79198 0.97514 1.37092 1.48797 1.52287 1.88926 2.16287 2.76944 3.05799 3.68494 3.74070 3.88376 4.00373 4.15161 4.30228 4.38321 4.50420 4.60956 4.64643 4.85162 4.90385 5.00928 5.09506 5.16078 5.19723 5.33240 5.36585 5.50722 5.57197 5.62665 5.82636 5.86090 5.94842 6.12795 6.17770 6.48473 6.76538 6.77033 7.65383 8.21216 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.026702 B = 0.004680 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.345080 B = 5981.759884 C = 6956.230826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.038 3.962 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.085 0.915 9 C 0.095 3.905 10 C -0.292 4.292 11 C 0.101 3.899 12 N -0.575 5.575 13 C 0.122 3.878 14 C -0.103 4.103 15 C -0.091 4.091 16 C -0.072 4.072 17 C -0.120 4.120 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.133 4.133 22 C -0.218 4.218 23 H 0.293 0.707 24 H 0.115 0.885 25 H 0.158 0.842 26 H 0.125 0.875 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 -3.715 -7.768 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.179 4.179 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.103 0.897 9 C 0.087 3.913 10 C -0.315 4.315 11 C -0.054 4.054 12 N -0.291 5.291 13 C -0.008 4.008 14 C -0.121 4.121 15 C -0.111 4.111 16 C -0.072 4.072 17 C -0.138 4.138 18 C -0.140 4.140 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.151 4.151 22 C -0.241 4.241 23 H 0.104 0.896 24 H 0.133 0.867 25 H 0.175 0.825 26 H 0.143 0.857 27 H 0.140 0.860 28 H 0.151 0.849 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.138 0.862 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.308 -4.352 -7.982 13.011 hybrid contribution 1.099 1.570 0.677 2.032 sum -8.209 -2.782 -7.305 11.335 Atomic orbital electron populations 1.69811 1.09267 1.31275 1.33593 1.26897 0.95528 1.04861 0.90662 0.85147 0.78765 0.74952 0.80275 1.18331 1.18883 1.18057 1.19916 0.98416 0.91896 1.41751 0.89705 1.18204 0.91325 0.93615 0.88122 1.22149 1.05776 0.93781 1.09792 1.22390 0.91220 0.97951 0.93866 1.67551 1.15528 1.28141 1.17890 1.20007 0.95091 0.89275 0.96385 1.21957 0.93755 0.98637 0.97785 1.22106 0.93939 0.98334 0.96689 1.19237 0.95166 0.94599 0.98185 1.21555 0.96460 0.97119 0.98644 1.21432 0.95652 0.99564 0.97308 1.21608 1.00602 0.92010 0.99871 1.21381 0.95199 0.99726 0.97942 1.21574 0.97374 0.97456 0.98652 1.22319 1.00760 0.97318 1.03665 0.89558 0.86713 0.82473 0.85742 0.85970 0.84918 0.83158 0.83121 0.83897 0.86222 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.75 10.91 21.84 0.24 -41.51 16 2 C 0.04 1.86 5.20 85.29 0.44 2.31 16 3 Si 0.99 36.83 29.59 68.60 2.03 38.86 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 6 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 7 C -0.49 -26.10 9.12 23.52 0.21 -25.89 16 8 H 0.08 4.29 7.90 -2.91 -0.02 4.27 16 9 C 0.09 5.23 5.61 -21.13 -0.12 5.11 16 10 C -0.29 -14.59 9.90 22.88 0.23 -14.36 16 11 C 0.10 4.70 11.15 84.57 0.94 5.65 16 12 N -0.58 -28.26 9.30 -185.81 -1.73 -29.99 16 13 C 0.12 6.14 6.70 41.62 0.28 6.42 16 14 C -0.10 -4.36 9.28 23.76 0.22 -4.14 16 15 C -0.09 -3.41 9.44 23.78 0.22 -3.18 16 16 C -0.07 -2.25 5.87 -20.14 -0.12 -2.37 16 17 C -0.12 -3.09 9.79 22.56 0.22 -2.87 16 18 C -0.12 -2.48 10.03 22.23 0.22 -2.26 16 19 C -0.12 -2.38 10.04 22.34 0.22 -2.16 16 20 C -0.12 -2.82 10.03 22.23 0.22 -2.59 16 21 C -0.13 -3.81 9.41 22.56 0.21 -3.60 16 22 C -0.22 -11.85 8.52 23.15 0.20 -11.66 16 23 H 0.29 13.48 8.29 -92.71 -0.77 12.71 16 24 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 25 H 0.16 5.98 8.06 -2.91 -0.02 5.96 16 26 H 0.12 4.89 6.07 -2.91 -0.02 4.88 16 27 H 0.12 4.71 7.39 -2.91 -0.02 4.69 16 28 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.12 3.48 6.17 -2.91 -0.02 3.46 16 33 H 0.12 6.42 6.18 -2.91 -0.02 6.41 16 Total: -1.00 -62.31 291.55 5.27 -57.04 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 1.11 Total: 31.19 kcal Atomic # 6 Polarization: -59.20 SS G_CDS: 3.61 Total: -55.59 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -1.49 Total: -71.50 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -62.31 5.27 -57.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239591703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.802 kcal (2) G-P(sol) polarization free energy of solvation -62.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds