Wall clock time and date at job start Sun Mar 29 2020 23:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30702 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48496 * 109.47318 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47422 * 300.00173 * 3 2 1 6 6 H 1.48507 * 109.46854 * 59.99908 * 3 2 1 7 7 C 1.40157 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.40419 * 120.00016 * 359.97438 * 7 2 1 10 10 N 1.33907 * 120.30149 * 0.29560 * 9 7 2 11 11 C 1.31112 * 121.61366 * 180.29243 * 10 9 7 12 12 C 1.39053 * 122.11587 * 359.69007 * 11 10 9 13 13 C 1.37972 * 120.38825 * 0.02562 * 12 11 10 14 14 C 1.40453 * 118.39647 * 359.97438 * 13 12 11 15 15 C 1.46310 * 120.95560 * 180.02562 * 14 13 12 16 16 C 1.35234 * 119.99962 * 0.28037 * 15 14 13 17 17 C 1.47016 * 119.99934 * 179.72375 * 16 15 14 18 18 C 1.39974 * 120.17791 * 359.72487 * 17 16 15 19 19 C 1.37854 * 119.81239 * 179.72145 * 18 17 16 20 20 C 1.38443 * 120.17647 * 0.55165 * 19 18 17 21 21 C 1.38442 * 120.37471 * 359.71943 * 20 19 18 22 22 C 1.37846 * 120.17731 * 0.02562 * 21 20 19 23 23 H 0.97010 * 119.99488 * 0.02562 * 1 2 3 24 24 H 1.08005 * 118.93869 * 179.67366 * 11 10 9 25 25 H 1.08003 * 119.80813 * 180.02562 * 12 11 10 26 26 H 1.08003 * 120.80153 * 179.97438 * 13 12 11 27 27 H 1.08002 * 119.99617 * 179.97438 * 15 14 13 28 28 H 1.08001 * 119.99830 * 359.71588 * 16 15 14 29 29 H 1.08003 * 120.09535 * 359.97438 * 18 17 16 30 30 H 1.07996 * 119.90875 * 180.29485 * 19 18 17 31 31 H 1.08004 * 119.81081 * 179.74315 * 20 19 18 32 32 H 1.07995 * 119.91354 * 180.02562 * 21 20 19 33 33 H 1.08000 * 120.09108 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7010 1.3463 0.0006 5 1 1.8824 2.3964 -1.2124 6 1 1.8823 2.3964 1.2126 7 6 2.0077 -1.2138 -0.0005 8 1 3.0877 -1.2139 -0.0001 9 6 1.3056 -2.4299 -0.0005 10 7 -0.0335 -2.4368 -0.0060 11 6 -0.7150 -3.5569 -0.0004 12 6 -0.0931 -4.8006 0.0050 13 6 1.2836 -4.8926 0.0053 14 6 2.0324 -3.7043 -0.0006 15 6 3.4951 -3.7365 -0.0013 16 6 4.1453 -4.9223 -0.0018 17 6 5.6151 -4.9547 -0.0086 18 6 6.3452 -3.7605 -0.0202 19 6 7.7232 -3.7996 -0.0207 20 6 8.3849 -5.0156 -0.0212 21 6 7.6703 -6.2014 -0.0153 22 6 6.2920 -6.1798 -0.0095 23 1 -0.4850 0.8402 -0.0004 24 1 -1.7941 -3.5121 0.0002 25 1 -0.6911 -5.6999 0.0091 26 1 1.7736 -5.8550 0.0099 27 1 4.0556 -2.8133 -0.0063 28 1 3.5848 -5.8455 0.0028 29 1 5.8304 -2.8110 -0.0248 30 1 8.2880 -2.8791 -0.0249 31 1 9.4646 -5.0394 -0.0257 32 1 8.1941 -7.1458 -0.0153 33 1 5.7360 -7.1057 -0.0046 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239594570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:05 Heat of formation + Delta-G solvation = 61.883515 kcal Electronic energy + Delta-G solvation = -16556.591840 eV Core-core repulsion = 13932.729649 eV Total energy + Delta-G solvation = -2623.862192 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.75694 -38.00742 -34.09969 -33.88607 -30.92412 -30.64117 -30.32327 -27.80156 -25.66175 -23.48891 -22.17005 -21.68809 -20.74990 -18.44267 -17.70261 -16.76398 -15.79996 -15.08667 -14.74115 -14.47649 -14.21745 -13.68888 -13.10969 -12.94068 -12.61134 -12.55167 -12.29527 -12.25541 -11.41822 -11.39327 -11.21764 -11.06745 -10.75313 -10.56798 -10.43395 -10.02792 -9.77901 -9.63014 -8.65795 -8.59474 -8.04050 -7.76170 -6.89698 -6.69759 -4.70157 1.21941 1.72874 2.33688 2.74274 2.94693 2.99289 3.10254 3.66481 3.72931 4.37659 4.53611 5.15161 5.21167 5.30614 5.47761 5.74118 5.76811 5.79147 5.83180 5.99795 6.07894 6.25630 6.32300 6.40616 6.53452 6.56854 6.74987 6.81759 6.84666 6.86297 7.11388 7.24384 7.32883 7.40474 7.60303 7.74768 7.90285 7.98055 8.35189 8.69172 9.85644 10.00661 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.006213 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.751897 B = 4505.313012 C = 5998.208175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.062 3.938 3 Si 0.912 3.088 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.396 4.396 8 H 0.092 0.908 9 C 0.264 3.736 10 N -0.489 5.489 11 C 0.146 3.854 12 C -0.326 4.326 13 C -0.021 4.021 14 C -0.263 4.263 15 C 0.004 3.996 16 C -0.234 4.234 17 C -0.004 4.004 18 C -0.139 4.139 19 C -0.112 4.112 20 C -0.153 4.153 21 C -0.115 4.115 22 C -0.137 4.137 23 H 0.279 0.721 24 H 0.119 0.881 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.416 -3.808 -0.008 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.166 4.166 3 Si 0.735 3.265 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.424 4.424 8 H 0.110 0.890 9 C 0.142 3.858 10 N -0.200 5.200 11 C -0.024 4.024 12 C -0.349 4.349 13 C -0.044 4.044 14 C -0.268 4.268 15 C -0.015 4.015 16 C -0.253 4.253 17 C -0.004 4.004 18 C -0.157 4.157 19 C -0.130 4.130 20 C -0.171 4.171 21 C -0.133 4.133 22 C -0.155 4.155 23 H 0.091 0.909 24 H 0.137 0.863 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.141 0.859 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.817 -2.796 -0.015 8.302 hybrid contribution 0.669 -0.271 0.008 0.721 sum 8.486 -3.067 -0.007 9.023 Atomic orbital electron populations 1.70115 1.07492 1.28647 1.25050 1.26262 0.95067 1.01715 0.93593 0.86168 0.80977 0.80337 0.78976 1.17936 1.19399 1.19404 1.19709 0.94989 0.89346 1.38358 0.88978 1.19779 0.87988 0.90694 0.87386 1.68779 1.07262 1.26419 1.17533 1.22577 0.98887 0.88814 0.92139 1.21130 0.94833 0.97841 1.21115 1.21117 0.93684 0.96167 0.93479 1.20473 0.91980 0.93899 1.20414 1.21967 0.93082 0.96580 0.89865 1.21600 0.90695 0.97999 1.15005 1.19149 0.93637 0.92558 0.95091 1.21429 0.93868 0.98151 1.02207 1.20999 0.94455 0.97535 0.99991 1.21022 0.99166 0.92720 1.04224 1.20954 0.94189 0.97698 1.00506 1.21233 0.94072 0.97199 1.03005 0.90939 0.86337 0.88673 0.88096 0.87069 0.87250 0.85859 0.86659 0.86986 0.86832 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.35 11.47 55.56 0.64 -16.71 16 2 C 0.06 1.48 5.50 -17.31 -0.10 1.38 16 3 Si 0.91 17.31 29.56 -169.99 -5.03 12.28 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.40 -9.92 8.84 -38.04 -0.34 -10.26 16 8 H 0.09 2.13 6.11 -52.49 -0.32 1.81 16 9 C 0.26 6.94 6.72 -82.72 -0.56 6.39 16 10 N -0.49 -13.01 7.89 -9.67 -0.08 -13.09 16 11 C 0.15 3.43 11.12 -17.56 -0.20 3.23 16 12 C -0.33 -7.15 10.05 -39.38 -0.40 -7.54 16 13 C -0.02 -0.46 9.51 -38.85 -0.37 -0.83 16 14 C -0.26 -6.26 6.08 -102.40 -0.62 -6.88 16 15 C 0.00 0.07 8.94 -37.41 -0.33 -0.26 16 16 C -0.23 -4.44 9.34 -37.10 -0.35 -4.79 16 17 C 0.00 -0.07 5.87 -105.04 -0.62 -0.69 16 18 C -0.14 -2.28 9.42 -39.07 -0.37 -2.65 16 19 C -0.11 -1.59 10.03 -39.65 -0.40 -1.99 16 20 C -0.15 -2.03 10.04 -39.43 -0.40 -2.43 16 21 C -0.12 -1.56 10.03 -39.65 -0.40 -1.96 16 22 C -0.14 -2.09 9.80 -39.08 -0.38 -2.47 16 23 H 0.28 6.22 8.29 -40.82 -0.34 5.89 16 24 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 25 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 26 H 0.10 1.97 6.31 -52.48 -0.33 1.64 16 27 H 0.11 2.26 4.45 -52.49 -0.23 2.03 16 28 H 0.11 2.00 6.16 -52.49 -0.32 1.67 16 29 H 0.12 2.00 6.17 -52.48 -0.32 1.67 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -27.59 287.35 -9.15 -36.73 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -3.20 Total: 8.19 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -5.81 Total: -31.74 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.56 Total: -29.80 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.59 -9.15 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239594570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.616 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds