Wall clock time and date at job start Sun Mar 29 2020 23:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30702 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48496 * 109.47318 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47422 * 300.00173 * 3 2 1 6 6 H 1.48507 * 109.46854 * 59.99908 * 3 2 1 7 7 C 1.40157 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.40419 * 120.00016 * 359.97438 * 7 2 1 10 10 N 1.33907 * 120.30149 * 0.29560 * 9 7 2 11 11 C 1.31112 * 121.61366 * 180.29243 * 10 9 7 12 12 C 1.39053 * 122.11587 * 359.69007 * 11 10 9 13 13 C 1.37972 * 120.38825 * 0.02562 * 12 11 10 14 14 C 1.40453 * 118.39647 * 359.97438 * 13 12 11 15 15 C 1.46310 * 120.95560 * 180.02562 * 14 13 12 16 16 C 1.35234 * 119.99962 * 0.28037 * 15 14 13 17 17 C 1.47016 * 119.99934 * 179.72375 * 16 15 14 18 18 C 1.39974 * 120.17791 * 359.72487 * 17 16 15 19 19 C 1.37854 * 119.81239 * 179.72145 * 18 17 16 20 20 C 1.38443 * 120.17647 * 0.55165 * 19 18 17 21 21 C 1.38442 * 120.37471 * 359.71943 * 20 19 18 22 22 C 1.37846 * 120.17731 * 0.02562 * 21 20 19 23 23 H 0.97010 * 119.99488 * 0.02562 * 1 2 3 24 24 H 1.08005 * 118.93869 * 179.67366 * 11 10 9 25 25 H 1.08003 * 119.80813 * 180.02562 * 12 11 10 26 26 H 1.08003 * 120.80153 * 179.97438 * 13 12 11 27 27 H 1.08002 * 119.99617 * 179.97438 * 15 14 13 28 28 H 1.08001 * 119.99830 * 359.71588 * 16 15 14 29 29 H 1.08003 * 120.09535 * 359.97438 * 18 17 16 30 30 H 1.07996 * 119.90875 * 180.29485 * 19 18 17 31 31 H 1.08004 * 119.81081 * 179.74315 * 20 19 18 32 32 H 1.07995 * 119.91354 * 180.02562 * 21 20 19 33 33 H 1.08000 * 120.09108 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7010 1.3463 0.0006 5 1 1.8824 2.3964 -1.2124 6 1 1.8823 2.3964 1.2126 7 6 2.0077 -1.2138 -0.0005 8 1 3.0877 -1.2139 -0.0001 9 6 1.3056 -2.4299 -0.0005 10 7 -0.0335 -2.4368 -0.0060 11 6 -0.7150 -3.5569 -0.0004 12 6 -0.0931 -4.8006 0.0050 13 6 1.2836 -4.8926 0.0053 14 6 2.0324 -3.7043 -0.0006 15 6 3.4951 -3.7365 -0.0013 16 6 4.1453 -4.9223 -0.0018 17 6 5.6151 -4.9547 -0.0086 18 6 6.3452 -3.7605 -0.0202 19 6 7.7232 -3.7996 -0.0207 20 6 8.3849 -5.0156 -0.0212 21 6 7.6703 -6.2014 -0.0153 22 6 6.2920 -6.1798 -0.0095 23 1 -0.4850 0.8402 -0.0004 24 1 -1.7941 -3.5121 0.0002 25 1 -0.6911 -5.6999 0.0091 26 1 1.7736 -5.8550 0.0099 27 1 4.0556 -2.8133 -0.0063 28 1 3.5848 -5.8455 0.0028 29 1 5.8304 -2.8110 -0.0248 30 1 8.2880 -2.8791 -0.0249 31 1 9.4646 -5.0394 -0.0257 32 1 8.1941 -7.1458 -0.0153 33 1 5.7360 -7.1057 -0.0046 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239594570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:04 Heat of formation + Delta-G solvation = 49.275902 kcal Electronic energy + Delta-G solvation = -16557.138548 eV Core-core repulsion = 13932.729649 eV Total energy + Delta-G solvation = -2624.408899 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08494 -39.63821 -35.73906 -35.52221 -32.46612 -32.09017 -31.74508 -29.34950 -27.39428 -24.99374 -23.40469 -23.35048 -22.24462 -19.95612 -19.48516 -18.13637 -17.32241 -16.54669 -16.23975 -15.96776 -15.67118 -15.12678 -14.56831 -14.20035 -14.14183 -14.07664 -13.84345 -13.73675 -12.96007 -12.93578 -12.91822 -12.64468 -12.10983 -11.91161 -11.79848 -11.54423 -11.41171 -11.32245 -10.18687 -9.79521 -9.71862 -9.55990 -8.49365 -8.43801 -6.51559 -0.18622 0.58476 0.78901 1.09665 1.37713 1.52449 1.53821 2.10331 2.15648 2.76222 3.12890 3.90623 3.93718 4.02131 4.18536 4.21908 4.28507 4.34615 4.49748 4.58931 4.65492 4.73342 4.84051 4.88169 5.11195 5.17414 5.23343 5.39656 5.41134 5.53821 5.68213 5.72369 5.75087 5.97385 6.05203 6.19014 6.19883 6.23201 6.58303 6.88677 8.08612 8.28811 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.006213 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.751897 B = 4505.313012 C = 5998.208175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.020 3.980 3 Si 0.988 3.012 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.432 4.432 8 H 0.097 0.903 9 C 0.229 3.771 10 N -0.527 5.527 11 C 0.119 3.881 12 C -0.321 4.321 13 C -0.038 4.038 14 C -0.269 4.269 15 C -0.038 4.038 16 C -0.191 4.191 17 C -0.046 4.046 18 C -0.150 4.150 19 C -0.120 4.120 20 C -0.139 4.139 21 C -0.118 4.118 22 C -0.135 4.135 23 H 0.285 0.715 24 H 0.138 0.862 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.576 -5.269 -0.011 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.204 4.204 3 Si 0.807 3.193 4 H -0.173 1.173 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.461 4.461 8 H 0.115 0.885 9 C 0.105 3.895 10 N -0.239 5.239 11 C -0.048 4.048 12 C -0.344 4.344 13 C -0.061 4.061 14 C -0.274 4.274 15 C -0.056 4.056 16 C -0.210 4.210 17 C -0.046 4.046 18 C -0.168 4.168 19 C -0.138 4.138 20 C -0.156 4.156 21 C -0.136 4.136 22 C -0.153 4.153 23 H 0.096 0.904 24 H 0.156 0.844 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.959 -4.298 -0.018 11.772 hybrid contribution -0.007 -0.120 0.008 0.121 sum 10.952 -4.419 -0.010 11.810 Atomic orbital electron populations 1.70198 1.09132 1.29868 1.26686 1.27170 0.95802 1.04912 0.92491 0.85056 0.79597 0.75444 0.79155 1.17312 1.18734 1.18743 1.19996 0.95406 0.90173 1.40545 0.88507 1.20273 0.88466 0.92260 0.88468 1.68717 1.07896 1.28078 1.19212 1.23001 0.99949 0.89103 0.92729 1.21442 0.95208 0.98330 1.19402 1.21446 0.94010 0.96792 0.93872 1.20825 0.93501 0.93797 1.19229 1.21839 0.91953 0.97507 0.94324 1.21869 0.92075 0.97311 1.09730 1.19223 0.92700 0.94080 0.98624 1.21563 0.95208 0.97674 1.02393 1.21325 0.93589 0.99374 0.99545 1.21529 1.01064 0.92025 1.01015 1.21387 0.93524 0.99445 0.99199 1.21514 0.95282 0.96820 1.01672 0.90363 0.84434 0.85535 0.85382 0.87387 0.86429 0.86850 0.84367 0.83517 0.83418 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.82 11.47 21.86 0.25 -38.57 16 2 C 0.02 1.01 5.50 85.33 0.47 1.48 16 3 Si 0.99 36.57 29.56 68.60 2.03 38.60 16 4 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 5 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 7 C -0.43 -22.90 8.84 23.27 0.21 -22.69 16 8 H 0.10 4.77 6.11 -2.91 -0.02 4.75 16 9 C 0.23 12.68 6.72 41.57 0.28 12.96 16 10 N -0.53 -29.51 7.89 -184.50 -1.45 -30.97 16 11 C 0.12 5.79 11.12 85.00 0.94 6.74 16 12 C -0.32 -14.07 10.05 22.40 0.23 -13.85 16 13 C -0.04 -1.67 9.51 22.75 0.22 -1.46 16 14 C -0.27 -13.24 6.08 -18.42 -0.11 -13.36 16 15 C -0.04 -1.63 8.94 23.68 0.21 -1.42 16 16 C -0.19 -7.13 9.34 23.88 0.22 -6.91 16 17 C -0.05 -1.53 5.87 -20.14 -0.12 -1.65 16 18 C -0.15 -4.76 9.42 22.60 0.21 -4.55 16 19 C -0.12 -3.06 10.03 22.23 0.22 -2.84 16 20 C -0.14 -3.02 10.04 22.37 0.22 -2.79 16 21 C -0.12 -2.63 10.03 22.23 0.22 -2.40 16 22 C -0.13 -3.67 9.80 22.60 0.22 -3.45 16 23 H 0.29 13.36 8.29 -92.70 -0.77 12.59 16 24 H 0.14 5.85 8.06 -2.91 -0.02 5.83 16 25 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 26 H 0.13 4.82 6.31 -2.91 -0.02 4.80 16 27 H 0.11 4.63 4.45 -2.91 -0.01 4.62 16 28 H 0.12 4.10 6.16 -2.91 -0.02 4.08 16 29 H 0.11 3.73 6.17 -2.91 -0.02 3.71 16 30 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 31 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -62.77 287.35 5.60 -57.18 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 1.13 Total: 29.94 kcal Atomic # 6 Polarization: -59.83 SS G_CDS: 3.65 Total: -56.18 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -1.20 Total: -69.53 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -62.77 5.60 -57.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239594570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.451 kcal (2) G-P(sol) polarization free energy of solvation -62.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds