Wall clock time and date at job start Sun Mar 29 2020 23:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47137 * 229.11998 * 3 2 1 5 5 C 1.37098 * 119.99965 * 274.37866 * 4 3 2 6 6 H 1.07998 * 120.00524 * 55.46325 * 5 4 3 7 7 C 1.38948 * 119.99496 * 235.47239 * 5 4 3 8 8 N 1.31419 * 119.99981 * 196.10661 * 7 5 4 9 9 Si 1.86803 * 120.00312 * 16.09893 * 7 5 4 10 10 H 1.48499 * 109.46727 * 92.38680 * 9 7 5 11 11 H 1.48502 * 109.46872 * 212.38380 * 9 7 5 12 12 H 1.48502 * 109.47018 * 332.38525 * 9 7 5 13 13 C 1.34771 * 119.99738 * 94.37259 * 4 3 2 14 14 O 1.21292 * 120.00544 * 355.68183 * 13 4 3 15 15 C 1.50703 * 119.99647 * 175.40433 * 13 4 3 16 16 H 1.08994 * 109.40387 * 321.83307 * 15 13 4 17 17 C 1.53072 * 109.39704 * 202.00451 * 15 13 4 18 18 C 1.53353 * 108.42388 * 190.96960 * 17 15 13 19 19 C 1.52918 * 108.67035 * 67.53399 * 18 17 15 20 20 N 1.45755 * 110.49136 * 309.24558 * 19 18 17 21 21 C 1.33244 * 124.06690 * 19.15715 * 20 19 18 22 22 O 1.21280 * 118.15345 * 177.70829 * 21 20 19 23 23 H 1.08997 * 109.47069 * 109.12087 * 3 2 1 24 24 H 1.09000 * 109.47325 * 349.12250 * 3 2 1 25 25 H 0.97001 * 120.00051 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.67693 * 310.70545 * 17 15 13 27 27 H 1.09002 * 109.67524 * 71.20560 * 17 15 13 28 28 H 1.09000 * 109.60147 * 187.28848 * 18 17 15 29 29 H 1.09003 * 109.60429 * 307.61551 * 18 17 15 30 30 H 1.08997 * 109.30573 * 69.55885 * 19 18 17 31 31 H 1.09004 * 109.30232 * 189.13990 * 19 18 17 32 32 H 0.97004 * 117.95011 * 199.07711 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.9049 1.0444 5 6 3.2384 2.2428 0.7810 6 1 2.3981 2.8135 0.4142 7 6 4.4640 2.8645 0.9860 8 7 4.5342 4.1755 1.0442 9 14 6.0120 1.8368 1.1791 10 1 6.6594 1.6634 -0.1461 11 1 6.9504 2.5240 2.1023 12 1 5.6567 0.5061 1.7344 13 6 3.4047 0.4215 2.2639 14 8 3.2050 -0.7468 2.5217 15 6 4.0039 1.3311 3.3054 16 1 4.7020 2.0182 2.8276 17 6 4.7488 0.4912 4.3459 18 6 5.1103 1.3958 5.5303 19 6 3.8214 1.8093 6.2417 20 7 2.8571 2.3372 5.2847 21 6 2.9100 2.1148 3.9720 22 8 2.0266 2.5721 3.2781 23 1 2.9712 0.3374 -0.9709 24 1 2.9718 -1.0084 0.1939 25 1 5.3899 4.6095 1.1870 26 1 4.1088 -0.3223 4.6875 27 1 5.6580 0.0824 3.9050 28 1 5.7522 0.8520 6.2233 29 1 5.6313 2.2821 5.1679 30 1 3.3927 0.9419 6.7437 31 1 4.0483 2.5775 6.9810 32 1 2.1313 2.8835 5.6249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329699946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:33 Heat of formation + Delta-G solvation = -18.467832 kcal Electronic energy + Delta-G solvation = -19453.856781 eV Core-core repulsion = 16415.661030 eV Total energy + Delta-G solvation = -3038.195751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40447 -38.43562 -36.11564 -35.78490 -34.71389 -32.84257 -31.99785 -29.67507 -27.77804 -24.87790 -24.03171 -22.35757 -20.39411 -18.53084 -18.23558 -17.07486 -16.70157 -16.22092 -15.57120 -15.25341 -14.66071 -14.12483 -13.70058 -13.64364 -13.52332 -13.43080 -12.95463 -12.85748 -12.46957 -11.98764 -11.78655 -11.64934 -11.19546 -11.09552 -11.02789 -10.86613 -10.77103 -10.37554 -9.99953 -9.32809 -8.93079 -8.88158 -8.60231 -7.87667 -6.47973 -4.27249 2.85614 3.03802 3.11521 3.14715 3.38759 3.42799 3.47076 3.84800 3.95550 4.40600 4.71414 4.88614 4.90225 5.02784 5.03974 5.20305 5.53257 5.61656 5.77480 5.80677 5.90780 6.00348 6.03750 6.10866 6.20820 6.50276 7.26506 7.50704 7.63027 7.78911 8.21784 8.47696 8.77638 8.89578 9.08892 9.45730 10.60358 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.012244 C = 0.009985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.780375 B = 2286.280668 C = 2803.407294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.215 3.785 3 C 0.197 3.803 4 N -0.461 5.461 5 C -0.325 4.325 6 H 0.101 0.899 7 C 0.068 3.932 8 N -0.852 5.852 9 Si 0.846 3.154 10 H -0.271 1.271 11 H -0.274 1.274 12 H -0.253 1.253 13 C 0.524 3.476 14 O -0.578 6.578 15 C -0.114 4.114 16 H 0.124 0.876 17 C -0.115 4.115 18 C -0.138 4.138 19 C 0.115 3.885 20 N -0.731 5.731 21 C 0.532 3.468 22 O -0.500 6.500 23 H 0.120 0.880 24 H 0.111 0.889 25 H 0.275 0.725 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.241 -4.246 7.778 10.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.104 4.104 3 C 0.071 3.929 4 N -0.183 5.183 5 C -0.453 4.453 6 H 0.119 0.881 7 C -0.139 4.139 8 N -0.487 5.487 9 Si 0.670 3.330 10 H -0.197 1.197 11 H -0.199 1.199 12 H -0.177 1.177 13 C 0.312 3.688 14 O -0.461 6.461 15 C -0.138 4.138 16 H 0.141 0.859 17 C -0.153 4.153 18 C -0.176 4.176 19 C -0.010 4.010 20 N -0.387 5.387 21 C 0.316 3.684 22 O -0.372 6.372 23 H 0.138 0.862 24 H 0.129 0.871 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.270 -4.525 7.408 9.674 hybrid contribution 1.242 0.141 0.286 1.282 sum 5.511 -4.385 7.694 10.431 Atomic orbital electron populations 1.81013 1.13536 1.09644 1.09080 1.30026 0.95971 0.92062 0.92386 1.19080 0.80765 0.97711 0.95386 1.43450 1.59251 1.08327 1.07273 1.18895 0.97559 0.80611 1.48210 0.88114 1.25595 0.97681 0.95327 0.95265 1.69724 1.26267 1.08054 1.44670 0.87453 0.83983 0.82055 0.79510 1.19703 1.19900 1.17750 1.19917 0.78870 0.87221 0.82765 1.90558 1.57571 1.18089 1.79866 1.21426 0.97915 0.98305 0.96140 0.85938 1.21672 1.00963 0.98172 0.94520 1.21906 0.96984 1.00657 0.98075 1.21284 0.89599 0.98773 0.91355 1.45436 1.31041 1.55430 1.06792 1.19373 0.86841 0.80521 0.81624 1.90844 1.37180 1.48446 1.60767 0.86225 0.87105 0.91467 0.89644 0.90777 0.89718 0.90957 0.92044 0.91050 0.76888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.37 18.54 42.15 0.78 -9.59 16 2 C 0.21 4.54 15.73 -20.76 -0.33 4.21 16 3 C 0.20 3.75 5.88 -6.83 -0.04 3.71 16 4 N -0.46 -10.74 1.86 -117.93 -0.22 -10.96 16 5 C -0.32 -8.35 7.57 -14.93 -0.11 -8.47 16 6 H 0.10 2.94 8.06 -52.49 -0.42 2.51 16 7 C 0.07 1.71 4.24 -17.47 -0.07 1.64 16 8 N -0.85 -22.87 13.96 55.50 0.77 -22.10 16 9 Si 0.85 18.22 24.64 -169.99 -4.19 14.03 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 12 H -0.25 -5.30 4.64 56.52 0.26 -5.04 16 13 C 0.52 12.25 4.41 -10.99 -0.05 12.21 16 14 O -0.58 -13.87 15.37 5.55 0.09 -13.78 16 15 C -0.11 -2.44 1.05 -93.14 -0.10 -2.53 16 16 H 0.12 2.76 2.45 -51.93 -0.13 2.63 16 17 C -0.12 -1.94 4.88 -26.51 -0.13 -2.07 16 18 C -0.14 -1.76 6.02 -26.59 -0.16 -1.92 16 19 C 0.11 1.37 7.17 -4.49 -0.03 1.34 16 20 N -0.73 -11.98 5.44 -61.42 -0.33 -12.32 16 21 C 0.53 11.55 7.26 -11.92 -0.09 11.46 16 22 O -0.50 -13.07 15.48 5.56 0.09 -12.99 16 23 H 0.12 1.90 8.08 -51.93 -0.42 1.48 16 24 H 0.11 1.88 7.36 -51.93 -0.38 1.50 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.08 1.45 7.47 -51.93 -0.39 1.07 16 27 H 0.07 1.19 7.46 -51.93 -0.39 0.81 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.97 8.12 -51.93 -0.42 0.54 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 5.84 8.80 -40.82 -0.36 5.48 16 LS Contribution 268.88 15.07 4.05 4.05 Total: -1.00 -32.94 268.88 -3.52 -36.47 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.45 Total: 7.62 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: -1.11 Total: 19.57 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 1.00 Total: -54.96 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: 0.17 Total: -26.77 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -4.19 Total: 14.03 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.94 -3.52 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329699946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.997 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds