Wall clock time and date at job start Sun Mar 29 2020 23:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47137 * 229.11998 * 3 2 1 5 5 C 1.37098 * 119.99965 * 274.37866 * 4 3 2 6 6 H 1.07998 * 120.00524 * 55.46325 * 5 4 3 7 7 C 1.38948 * 119.99496 * 235.47239 * 5 4 3 8 8 N 1.31419 * 119.99981 * 196.10661 * 7 5 4 9 9 Si 1.86803 * 120.00312 * 16.09893 * 7 5 4 10 10 H 1.48499 * 109.46727 * 92.38680 * 9 7 5 11 11 H 1.48502 * 109.46872 * 212.38380 * 9 7 5 12 12 H 1.48502 * 109.47018 * 332.38525 * 9 7 5 13 13 C 1.34771 * 119.99738 * 94.37259 * 4 3 2 14 14 O 1.21292 * 120.00544 * 355.68183 * 13 4 3 15 15 C 1.50703 * 119.99647 * 175.40433 * 13 4 3 16 16 H 1.08994 * 109.40387 * 321.83307 * 15 13 4 17 17 C 1.53072 * 109.39704 * 202.00451 * 15 13 4 18 18 C 1.53353 * 108.42388 * 190.96960 * 17 15 13 19 19 C 1.52918 * 108.67035 * 67.53399 * 18 17 15 20 20 N 1.45755 * 110.49136 * 309.24558 * 19 18 17 21 21 C 1.33244 * 124.06690 * 19.15715 * 20 19 18 22 22 O 1.21280 * 118.15345 * 177.70829 * 21 20 19 23 23 H 1.08997 * 109.47069 * 109.12087 * 3 2 1 24 24 H 1.09000 * 109.47325 * 349.12250 * 3 2 1 25 25 H 0.97001 * 120.00051 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.67693 * 310.70545 * 17 15 13 27 27 H 1.09002 * 109.67524 * 71.20560 * 17 15 13 28 28 H 1.09000 * 109.60147 * 187.28848 * 18 17 15 29 29 H 1.09003 * 109.60429 * 307.61551 * 18 17 15 30 30 H 1.08997 * 109.30573 * 69.55885 * 19 18 17 31 31 H 1.09004 * 109.30232 * 189.13990 * 19 18 17 32 32 H 0.97004 * 117.95011 * 199.07711 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.9049 1.0444 5 6 3.2384 2.2428 0.7810 6 1 2.3981 2.8135 0.4142 7 6 4.4640 2.8645 0.9860 8 7 4.5342 4.1755 1.0442 9 14 6.0120 1.8368 1.1791 10 1 6.6594 1.6634 -0.1461 11 1 6.9504 2.5240 2.1023 12 1 5.6567 0.5061 1.7344 13 6 3.4047 0.4215 2.2639 14 8 3.2050 -0.7468 2.5217 15 6 4.0039 1.3311 3.3054 16 1 4.7020 2.0182 2.8276 17 6 4.7488 0.4912 4.3459 18 6 5.1103 1.3958 5.5303 19 6 3.8214 1.8093 6.2417 20 7 2.8571 2.3372 5.2847 21 6 2.9100 2.1148 3.9720 22 8 2.0266 2.5721 3.2781 23 1 2.9712 0.3374 -0.9709 24 1 2.9718 -1.0084 0.1939 25 1 5.3899 4.6095 1.1870 26 1 4.1088 -0.3223 4.6875 27 1 5.6580 0.0824 3.9050 28 1 5.7522 0.8520 6.2233 29 1 5.6313 2.2821 5.1679 30 1 3.3927 0.9419 6.7437 31 1 4.0483 2.5775 6.9810 32 1 2.1313 2.8835 5.6249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329699946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:33 Heat of formation + Delta-G solvation = -44.291932 kcal Electronic energy + Delta-G solvation = -19454.976598 eV Core-core repulsion = 16415.661030 eV Total energy + Delta-G solvation = -3039.315568 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.02368 -40.09854 -37.80340 -37.31783 -36.54089 -34.42034 -33.73501 -31.09258 -29.37166 -26.60660 -25.51212 -23.74607 -22.00490 -20.11138 -19.91690 -18.72224 -18.18919 -17.84305 -17.24341 -16.88054 -16.23645 -15.65892 -15.27027 -15.18195 -15.12520 -14.94017 -14.57022 -14.31724 -14.22982 -13.71789 -13.42338 -13.27096 -12.85484 -12.53136 -12.39825 -12.29026 -12.20551 -11.85707 -11.61579 -11.11275 -10.76483 -10.57822 -9.95170 -9.76279 -8.40797 -6.26362 1.14080 1.36592 1.38047 1.44176 1.68003 1.76629 1.77947 2.16665 2.45858 2.74506 2.89764 3.23212 3.64093 3.73198 3.84624 3.91057 4.20391 4.31521 4.50035 4.56372 4.60092 4.74869 4.86020 4.99983 5.03793 5.31352 5.70113 5.74152 5.97311 6.34476 6.38800 6.53199 6.88176 7.19236 7.35114 7.58348 8.71881 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.012244 C = 0.009985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.780375 B = 2286.280668 C = 2803.407294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.226 3.774 3 C 0.192 3.808 4 N -0.470 5.470 5 C -0.324 4.324 6 H 0.048 0.952 7 C 0.033 3.967 8 N -0.898 5.898 9 Si 0.910 3.090 10 H -0.264 1.264 11 H -0.259 1.259 12 H -0.244 1.244 13 C 0.514 3.486 14 O -0.587 6.587 15 C -0.123 4.123 16 H 0.111 0.889 17 C -0.115 4.115 18 C -0.135 4.135 19 C 0.104 3.896 20 N -0.718 5.718 21 C 0.522 3.478 22 O -0.565 6.565 23 H 0.154 0.846 24 H 0.140 0.860 25 H 0.280 0.720 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.129 0.871 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.707 -5.684 9.693 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.092 4.092 3 C 0.066 3.934 4 N -0.192 5.192 5 C -0.453 4.453 6 H 0.066 0.934 7 C -0.170 4.170 8 N -0.534 5.534 9 Si 0.731 3.269 10 H -0.190 1.190 11 H -0.183 1.183 12 H -0.167 1.167 13 C 0.303 3.697 14 O -0.471 6.471 15 C -0.146 4.146 16 H 0.128 0.872 17 C -0.153 4.153 18 C -0.172 4.172 19 C -0.019 4.019 20 N -0.372 5.372 21 C 0.308 3.692 22 O -0.443 6.443 23 H 0.171 0.829 24 H 0.157 0.843 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.147 0.853 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.752 -5.978 9.379 13.011 hybrid contribution 0.382 0.609 -0.233 0.756 sum 7.134 -5.370 9.146 12.782 Atomic orbital electron populations 1.81007 1.14732 1.10928 1.10290 1.30499 0.96446 0.90946 0.91317 1.19546 0.79242 0.98529 0.96037 1.43526 1.59414 1.07891 1.08363 1.18367 0.96470 0.81687 1.48728 0.93410 1.26158 1.00565 0.96095 0.94216 1.69851 1.27426 1.10092 1.45994 0.86434 0.79661 0.80712 0.80080 1.18979 1.18310 1.16742 1.20418 0.78643 0.87523 0.83090 1.90535 1.58098 1.18437 1.80000 1.21530 0.97809 0.98436 0.96855 0.87206 1.21765 1.00539 0.98151 0.94815 1.21993 0.97821 1.00110 0.97291 1.21748 0.88452 1.00899 0.90759 1.45439 1.31833 1.54152 1.05740 1.19635 0.86337 0.80191 0.83080 1.90815 1.39489 1.51167 1.62782 0.82863 0.84259 0.91021 0.89963 0.89873 0.85252 0.91527 0.89721 0.87161 0.76091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -22.83 18.54 20.01 0.37 -22.46 16 2 C 0.23 9.63 15.73 89.44 1.41 11.04 16 3 C 0.19 7.14 5.88 84.57 0.50 7.63 16 4 N -0.47 -21.89 1.86 -645.41 -1.20 -23.09 16 5 C -0.32 -17.19 7.57 84.04 0.64 -16.55 16 6 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 7 C 0.03 1.69 4.24 84.92 0.36 2.05 16 8 N -0.90 -49.31 13.96 21.66 0.30 -49.01 16 9 Si 0.91 36.78 24.64 68.60 1.69 38.47 16 10 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 11 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 12 H -0.24 -9.37 4.64 99.48 0.46 -8.91 16 13 C 0.51 23.64 4.41 87.66 0.39 24.03 16 14 O -0.59 -27.32 15.37 -3.07 -0.05 -27.37 16 15 C -0.12 -5.08 1.05 -12.43 -0.01 -5.10 16 16 H 0.11 4.82 2.45 -2.39 -0.01 4.82 16 17 C -0.11 -3.49 4.88 30.74 0.15 -3.34 16 18 C -0.13 -2.82 6.02 30.69 0.18 -2.64 16 19 C 0.10 2.04 7.17 86.49 0.62 2.66 16 20 N -0.72 -22.29 5.44 -467.47 -2.55 -24.83 16 21 C 0.52 22.64 7.26 87.73 0.64 23.28 16 22 O -0.56 -30.69 15.48 -3.03 -0.05 -30.74 16 23 H 0.15 4.63 8.08 -2.39 -0.02 4.61 16 24 H 0.14 4.42 7.36 -2.39 -0.02 4.41 16 25 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 26 H 0.08 2.55 7.47 -2.39 -0.02 2.53 16 27 H 0.08 2.36 7.46 -2.39 -0.02 2.34 16 28 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.51 8.12 -2.39 -0.02 1.49 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.40 11.41 8.80 -92.71 -0.82 10.59 16 Total: -1.00 -75.65 268.88 3.50 -72.14 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.11 Total: 23.82 kcal Atomic # 6 Polarization: 38.20 SS G_CDS: 4.87 Total: 43.07 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -3.07 Total: -119.39 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -0.09 Total: -58.10 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 1.69 Total: 38.47 kcal Total: -75.65 3.50 -72.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329699946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.852 kcal (2) G-P(sol) polarization free energy of solvation -75.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds